Guide to the Human Genome
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Name: PDE6B Sequence: fasta or formatted (854aa) NCBI GI: 105990537
Description:

phosphodiesterase 6B isoform 1

Referenced in:

Cyclic Nucleotides
Photoreceptors and Related Functions

Other entries for this name:
alt prot [575aa] phosphodiesterase 6B isoform 3
alt prot [853aa] phosphodiesterase 6B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         54           3
 C cysteine            2.5         21           2
 D aspartate           6.6         56           2
 E glutamate           9.0         77           4
 F phenylalanine       5.3         45           2
 G glycine             4.3         37           2
 H histidine           2.3         20           2
 I isoleucine          4.8         41           2
 K lysine              6.8         58           2
 L leucine            10.3         88           2
 M methionine          3.6         31           3
 N asparagine          4.0         34           2
 P proline             3.7         32           2
 Q glutamine           4.0         34           2
 R arginine            4.6         39           2
 S serine              5.3         45           2
 T threonine           4.7         40           2
 V valine              7.1         61           2
 W tryptophan          1.2         10           1
 Y tyrosine            3.6         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 6B isoform 1 
PDE6B                 0.996   phosphodiesterase 6B isoform 2 
PDE6A                 0.727   phosphodiesterase 6A 
PDE6B                 0.672   phosphodiesterase 6B isoform 3 
PDE6C                 0.652   phosphodiesterase 6C 
PDE11A                0.237   phosphodiesterase 11A isoform 4 
PDE5A                 0.223   phosphodiesterase 5A isoform 1 
PDE5A                 0.223   phosphodiesterase 5A isoform 3 
PDE5A                 0.223   phosphodiesterase 5A isoform 2 
PDE11A                0.208   phosphodiesterase 11A isoform 3 
PDE11A                0.189   phosphodiesterase 11A isoform 2 
PDE11A                0.176   phosphodiesterase 11A isoform 1 
PDE2A                 0.151   phosphodiesterase 2A isoform 3 
PDE2A                 0.151   phosphodiesterase 2A isoform 2 
PDE2A                 0.151   phosphodiesterase 2A isoform 1 
PDE10A                0.121   phosphodiesterase 10A isoform 1 
PDE10A                0.121   phosphodiesterase 10A isoform 2 
PDE4D                 0.069   phosphodiesterase 4D isoform 1 
PDE4D                 0.069   phosphodiesterase 4D isoform 2 
PDE4A                 0.068   phosphodiesterase 4A isoform 3 
PDE4A                 0.068   phosphodiesterase 4A isoform 2 
PDE4A                 0.068   phosphodiesterase 4A isoform 1 
PDE4A                 0.068   phosphodiesterase 4A isoform 4 
PDE4C                 0.065   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 0.065   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.065   phosphodiesterase 4C isoform PDE4C-1 
PDE9A                 0.063   phosphodiesterase 9A isoform g 
PDE9A                 0.063   phosphodiesterase 9A isoform g 
PDE9A                 0.063   phosphodiesterase 9A isoform o 
PDE9A                 0.063   phosphodiesterase 9A isoform n 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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