Guide to the Human Genome
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Name: PDE5A Sequence: fasta or formatted (833aa) NCBI GI: 61744430
Description:

phosphodiesterase 5A isoform 2

Referenced in:

Cyclic Nucleotides

Other entries for this name:
alt prot [823aa] phosphodiesterase 5A isoform 3
alt prot [875aa] phosphodiesterase 5A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         58           3
 C cysteine            3.0         25           1
 D aspartate           5.4         45           1
 E glutamate           8.3         69           3
 F phenylalanine       4.7         39           2
 G glycine             4.0         33           2
 H histidine           3.0         25           3
 I isoleucine          6.6         55           2
 K lysine              6.8         57           2
 L leucine            10.3         86           2
 M methionine          2.6         22           1
 N asparagine          5.6         47           2
 P proline             3.4         28           2
 Q glutamine           5.3         44           2
 R arginine            4.4         37           2
 S serine              6.4         53           2
 T threonine           5.0         42           2
 V valine              5.3         44           2
 W tryptophan          0.8          7           1
 Y tyrosine            2.0         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 5A isoform 2 
PDE5A                 0.991   phosphodiesterase 5A isoform 1 
PDE5A                 0.987   phosphodiesterase 5A isoform 3 
PDE11A                0.345   phosphodiesterase 11A isoform 4 
PDE11A                0.299   phosphodiesterase 11A isoform 3 
PDE11A                0.260   phosphodiesterase 11A isoform 2 
PDE11A                0.233   phosphodiesterase 11A isoform 1 
PDE6B                 0.231   phosphodiesterase 6B isoform 2 
PDE6B                 0.231   phosphodiesterase 6B isoform 1 
PDE6A                 0.223   phosphodiesterase 6A 
PDE6C                 0.213   phosphodiesterase 6C 
PDE10A                0.192   phosphodiesterase 10A isoform 2 
PDE10A                0.192   phosphodiesterase 10A isoform 1 
PDE6B                 0.174   phosphodiesterase 6B isoform 3 
PDE2A                 0.159   phosphodiesterase 2A isoform 3 
PDE2A                 0.159   phosphodiesterase 2A isoform 2 
PDE2A                 0.159   phosphodiesterase 2A isoform 1 
PDE4C                 0.068   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 0.068   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.068   phosphodiesterase 4C isoform PDE4C-1 
PDE9A                 0.068   phosphodiesterase 9A isoform g 
PDE9A                 0.068   phosphodiesterase 9A isoform g 
PDE9A                 0.068   phosphodiesterase 9A isoform o 
PDE9A                 0.068   phosphodiesterase 9A isoform n 
PDE9A                 0.068   phosphodiesterase 9A isoform m 
PDE9A                 0.068   phosphodiesterase 9A isoform j 
PDE9A                 0.068   phosphodiesterase 9A isoform g 
PDE9A                 0.068   phosphodiesterase 9A isoform l 
PDE9A                 0.068   phosphodiesterase 9A isoform k 
PDE9A                 0.068   phosphodiesterase 9A isoform j 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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