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Search of human proteins with 18079254
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18079254 p53 and DNA damage-regulated protein [Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18079254 p53 and DNA damage-regulated protein [Homo sapiens] 261 9e-71
gi|67782321 spectrin beta isoform a [Homo sapiens] 35 0.018
gi|67782319 spectrin beta isoform b [Homo sapiens] 35 0.018
gi|12408677 prefoldin subunit 4 [Homo sapiens] 35 0.018
gi|7705415 hook homolog 1 [Homo sapiens] 33 0.087
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 32 0.15
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 32 0.15
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 32 0.15
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 32 0.15
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 32 0.15
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 32 0.15
gi|229577000 ecotropic viral integration site 5-like isoform 1 [... 32 0.19
gi|216548091 leucine zipper protein 1 [Homo sapiens] 31 0.25
gi|216548085 leucine zipper protein 1 [Homo sapiens] 31 0.25
gi|203096856 kinesin family member 7 [Homo sapiens] 31 0.25
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 31 0.33
gi|8922633 high-mobility group 20A [Homo sapiens] 31 0.33
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 31 0.33
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 30 0.43
gi|42734430 polymerase I and transcript release factor [Homo sap... 30 0.57
gi|109255234 centrosomal protein 290kDa [Homo sapiens] 30 0.57
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi... 30 0.57
gi|217035164 coiled-coil domain containing 27 [Homo sapiens] 30 0.57
gi|13775238 plasmalemma vesicle associated protein [Homo sapiens] 30 0.57
gi|40807469 TRAF interacting protein [Homo sapiens] 30 0.74
gi|219803769 trichoplein [Homo sapiens] 30 0.74
gi|14150056 trichoplein [Homo sapiens] 30 0.74
gi|189217904 RPGRIP1-like isoform b [Homo sapiens] 30 0.74
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 30 0.74
gi|215599562 hypothetical protein LOC89927 isoform 2 [Homo sapiens] 30 0.74
>gi|18079254 p53 and DNA damage-regulated protein [Homo sapiens]
Length = 133
Score = 261 bits (668), Expect = 9e-71
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVC 60
MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVC
Sbjct: 1 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVC 60
Query: 61 FGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLN 120
FGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLN
Sbjct: 61 FGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLN 120
Query: 121 QDELKALKVILKG 133
QDELKALKVILKG
Sbjct: 121 QDELKALKVILKG 133
>gi|67782321 spectrin beta isoform a [Homo sapiens]
Length = 2328
Score = 35.0 bits (79), Expect = 0.018
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 6 AERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLS-LSEDVMVCFGNM 64
A RV Y V+ EE ++ + DK ++V+ ++ G+ A+Q+ LS L DV +
Sbjct: 953 ALRVHNYCVDCEETSKWI-TDKTKVVESTKDLGRDLAGIIAIQRKLSGLERDVAAIQARV 1011
Query: 65 F--------IKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFE 104
+ HPE KE I + Q HL++ + L++ L+ + + L E
Sbjct: 1012 DALERESQQLMDSHPEQKEDIGQRQKHLEELWQGLQQSLQGQEDLLGE 1059
>gi|67782319 spectrin beta isoform b [Homo sapiens]
Length = 2137
Score = 35.0 bits (79), Expect = 0.018
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 6 AERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLS-LSEDVMVCFGNM 64
A RV Y V+ EE ++ + DK ++V+ ++ G+ A+Q+ LS L DV +
Sbjct: 953 ALRVHNYCVDCEETSKWI-TDKTKVVESTKDLGRDLAGIIAIQRKLSGLERDVAAIQARV 1011
Query: 65 F--------IKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFE 104
+ HPE KE I + Q HL++ + L++ L+ + + L E
Sbjct: 1012 DALERESQQLMDSHPEQKEDIGQRQKHLEELWQGLQQSLQGQEDLLGE 1059
>gi|12408677 prefoldin subunit 4 [Homo sapiens]
Length = 134
Score = 35.0 bits (79), Expect = 0.018
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 16 VEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSED--VMVCF--GNMFIKMPHP 71
+ EL EE+ K+Q+ +L+ + D+ L++D +M+ + G++FI
Sbjct: 33 ITELKEEIEVKKKQLQNLEDACD-----------DIMLADDDCLMIPYQIGDVFISHSQE 81
Query: 72 ETKEMIEKDQDHLDKEIEKLRKQLK 96
ET+EM+E+ + +L +EI+ L +++
Sbjct: 82 ETQEMLEEAKKNLQEEIDALESRVE 106
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 32.7 bits (73), Expect = 0.087
Identities = 26/111 (23%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 16 VEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPETKE 75
+EEL E++ R++ +L+T++ ++E +R LQ+ + ED+ K + +
Sbjct: 489 IEELQEQLEQKHRKMNELETEQRLSKERIRELQQQI---EDLQKSLQEQGSKSEGESSSK 545
Query: 76 MIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLNQDELKA 126
+ +K + H++K + ++ ++L+ K + + Q P++ N N +EL+A
Sbjct: 546 LKQKLEAHMEK-LTEVHEELQKKQELIEDLQ--PDI---NQNVQKINELEA 590
Score = 28.9 bits (63), Expect = 1.3
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 7 ERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFI 66
+++ ++ ++ E+ EE+ + I DL NQN + + L+ L ++ M +
Sbjct: 548 QKLEAHMEKLTEVHEELQKKQELIEDLQPDINQNVQKINELEAALQKKDEDMKAMEERY- 606
Query: 67 KMPHPETKEMIEKDQDHLD---KEIEKLRKQLKVKVNRL 102
KM + + +I+ L+ EI LRKQL K R+
Sbjct: 607 KMYLEKARNVIKTLDPKLNPASAEIMLLRKQLAEKERRI 645
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sapiens]
Length = 1293
Score = 32.0 bits (71), Expect = 0.15
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 13 LVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPE 72
L E+++L EE +RQ+ + +R Q RE ++ALQ+ + + +GN + P
Sbjct: 940 LAEIQKLEEE---RERQL--REEQRRQQRELMKALQQQQQQQQQKLSGWGN--VSKPSGT 992
Query: 73 TKEMIEKDQDHLDKEIEKLRKQ 94
TK ++E Q+ ++++K ++Q
Sbjct: 993 TKSLLEIQQEEA-RQMQKQQQQ 1013
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sapiens]
Length = 1320
Score = 32.0 bits (71), Expect = 0.15
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 13 LVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPE 72
L E+++L EE +RQ+ + +R Q RE ++ALQ+ + + +GN + P
Sbjct: 967 LAEIQKLEEE---RERQL--REEQRRQQRELMKALQQQQQQQQQKLSGWGN--VSKPSGT 1019
Query: 73 TKEMIEKDQDHLDKEIEKLRKQ 94
TK ++E Q+ ++++K ++Q
Sbjct: 1020 TKSLLEIQQEEA-RQMQKQQQQ 1040
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sapiens]
Length = 1299
Score = 32.0 bits (71), Expect = 0.15
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 13 LVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPE 72
L E+++L EE +RQ+ + +R Q RE ++ALQ+ + + +GN + P
Sbjct: 946 LAEIQKLEEE---RERQL--REEQRRQQRELMKALQQQQQQQQQKLSGWGN--VSKPSGT 998
Query: 73 TKEMIEKDQDHLDKEIEKLRKQ 94
TK ++E Q+ ++++K ++Q
Sbjct: 999 TKSLLEIQQEEA-RQMQKQQQQ 1019
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapiens]
Length = 1299
Score = 32.0 bits (71), Expect = 0.15
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 13 LVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPE 72
L E+++L EE +RQ+ + +R Q RE ++ALQ+ + + +GN + P
Sbjct: 946 LAEIQKLEEE---RERQL--REEQRRQQRELMKALQQQQQQQQQKLSGWGN--VSKPSGT 998
Query: 73 TKEMIEKDQDHLDKEIEKLRKQ 94
TK ++E Q+ ++++K ++Q
Sbjct: 999 TKSLLEIQQEEA-RQMQKQQQQ 1019
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 32.0 bits (71), Expect = 0.15
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 18 ELAEEVLADKRQIVDLDTKRNQ---NREGLRALQKDL--SLSEDVMVCFGNMF--IKMPH 70
E+++++ + + +L TK+NQ L+ LQ+ L S SE++ + + I++
Sbjct: 673 EMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILR 732
Query: 71 PETKEM--IEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLNQDELKALK 128
E KE +E++ L + E L KQ+K K N L E + E + N + +DE K L+
Sbjct: 733 QEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAE----NSILKDEKKTLE 788
Query: 129 VILK 132
+LK
Sbjct: 789 DMLK 792
Score = 29.3 bits (64), Expect = 0.97
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 7 ERVLRYLVEVEELAEEVLADKRQ-IVDLDTKRNQNREGLRALQ-------------KDLS 52
+R L LVE + E + RQ I + ++K N+ + L ++ K+L
Sbjct: 527 QRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELE 586
Query: 53 LSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQL 95
L + V + ++M E ++++ + + E+E+LR QL
Sbjct: 587 LKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL 629
Score = 28.1 bits (61), Expect = 2.2
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 1 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVC 60
M S + ++R + E + A ++ +++ + + +E +R Q+ +E
Sbjct: 1552 MFSKDKTFIVRQSIHDEISVSSMDASRQLMLNEEQLEDMRQELVRQYQEHQQATE----- 1606
Query: 61 FGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQL 95
++ H E +DQ+ L +EI++L +QL
Sbjct: 1607 ----LLRQAHMRQMERQREDQEQLQEEIKRLNRQL 1637
Score = 26.9 bits (58), Expect = 4.8
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 36 KRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQL 95
K + + GL + D ++D V FG + + E + D L++++ KL++QL
Sbjct: 2255 KDDMEKLGLAIKESDAMSTQDQHVLFGKF------AQIIQEKEVEIDQLNEQVTKLQQQL 2308
Query: 96 KVKV-NRLFEAQGK 108
K+ N++ E + +
Sbjct: 2309 KITTDNKVIEEKNE 2322
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 32.0 bits (71), Expect = 0.15
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 18 ELAEEVLADKRQIVDLDTKRNQ---NREGLRALQKDL--SLSEDVMVCFGNMF--IKMPH 70
E+++++ + + +L TK+NQ L+ LQ+ L S SE++ + + I++
Sbjct: 673 EMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILR 732
Query: 71 PETKEM--IEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLNQDELKALK 128
E KE +E++ L + E L KQ+K K N L E + E + N + +DE K L+
Sbjct: 733 QEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAE----NSILKDEKKTLE 788
Query: 129 VILK 132
+LK
Sbjct: 789 DMLK 792
Score = 29.3 bits (64), Expect = 0.97
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 7 ERVLRYLVEVEELAEEVLADKRQ-IVDLDTKRNQNREGLRALQ-------------KDLS 52
+R L LVE + E + RQ I + ++K N+ + L ++ K+L
Sbjct: 527 QRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELE 586
Query: 53 LSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQL 95
L + V + ++M E ++++ + + E+E+LR QL
Sbjct: 587 LKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL 629
Score = 28.1 bits (61), Expect = 2.2
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 1 MLSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVC 60
M S + ++R + E + A ++ +++ + + +E +R Q+ +E
Sbjct: 1552 MFSKDKTFIVRQSIHDEISVSSMDASRQLMLNEEQLEDMRQELVRQYQEHQQATE----- 1606
Query: 61 FGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQL 95
++ H E +DQ+ L +EI++L +QL
Sbjct: 1607 ----LLRQAHMRQMERQREDQEQLQEEIKRLNRQL 1637
Score = 26.9 bits (58), Expect = 4.8
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 36 KRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQL 95
K + + GL + D ++D V FG + + E + D L++++ KL++QL
Sbjct: 2247 KDDMEKLGLAIKESDAMSTQDQHVLFGKF------AQIIQEKEVEIDQLNEQVTKLQQQL 2300
Query: 96 KVKV-NRLFEAQGK 108
K+ N++ E + +
Sbjct: 2301 KITTDNKVIEEKNE 2314
>gi|229577000 ecotropic viral integration site 5-like isoform 1
[Homo sapiens]
Length = 805
Score = 31.6 bits (70), Expect = 0.19
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 18/138 (13%)
Query: 8 RVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDL--------SLSEDVMV 59
R+L+ +E E LAD+ ++ R Q E ++++L S +ED+
Sbjct: 389 RLLKQRIETLEKESAALADR--LIQGQVTRAQEAEENYVIKRELAVVRQQCSSAAEDLQK 446
Query: 60 CFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGK---PELKGFNL 116
+ E + E HL+ E+E+ R + + L E Q K E + +L
Sbjct: 447 AQSTIRQLQEQQENPRLTEDFVSHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSL 506
Query: 117 NPLN-----QDELKALKV 129
N Q+ELKALKV
Sbjct: 507 PDENNVAQLQEELKALKV 524
>gi|216548091 leucine zipper protein 1 [Homo sapiens]
Length = 1076
Score = 31.2 bits (69), Expect = 0.25
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 2 LSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCF 61
L E ER+ + + E+E+L E K L N+ R + + +L +
Sbjct: 106 LKSEIERLQKRMAELEKLEEAFSRSKNDCTQLCLSLNEERNLTKKISSELEM-------- 157
Query: 62 GNMFIKMPHPETKE-MIEKDQDHLDKEIEKLR 92
+ +K+ E+ E ++K + L E+EKL+
Sbjct: 158 --LRVKVKELESSEDRLDKTEQSLASELEKLK 187
Score = 27.7 bits (60), Expect = 2.8
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 20/106 (18%)
Query: 11 RYLVEVEELAEEVLADKRQIVDLDTKRNQN--REGLRALQKDLSLSEDVMVCF------- 61
+YL E E+ E+++ + Q ++ + K N++ R + DL + + +
Sbjct: 198 KYLNEKEKENEKLIKELTQKLEQNKKMNRDYTRNASNLERNDLRIEDGISSTLPSKESRR 257
Query: 62 --GNMFIKMPHPETKEMIEKDQDH---------LDKEIEKLRKQLK 96
G ++K ET+ E +++ L++EIEKL+ Q+K
Sbjct: 258 KGGLDYLKQVENETRNKSENEKNRNQEDNKVKDLNQEIEKLKTQIK 303
>gi|216548085 leucine zipper protein 1 [Homo sapiens]
Length = 1076
Score = 31.2 bits (69), Expect = 0.25
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 2 LSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCF 61
L E ER+ + + E+E+L E K L N+ R + + +L +
Sbjct: 106 LKSEIERLQKRMAELEKLEEAFSRSKNDCTQLCLSLNEERNLTKKISSELEM-------- 157
Query: 62 GNMFIKMPHPETKE-MIEKDQDHLDKEIEKLR 92
+ +K+ E+ E ++K + L E+EKL+
Sbjct: 158 --LRVKVKELESSEDRLDKTEQSLASELEKLK 187
Score = 27.7 bits (60), Expect = 2.8
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 20/106 (18%)
Query: 11 RYLVEVEELAEEVLADKRQIVDLDTKRNQN--REGLRALQKDLSLSEDVMVCF------- 61
+YL E E+ E+++ + Q ++ + K N++ R + DL + + +
Sbjct: 198 KYLNEKEKENEKLIKELTQKLEQNKKMNRDYTRNASNLERNDLRIEDGISSTLPSKESRR 257
Query: 62 --GNMFIKMPHPETKEMIEKDQDH---------LDKEIEKLRKQLK 96
G ++K ET+ E +++ L++EIEKL+ Q+K
Sbjct: 258 KGGLDYLKQVENETRNKSENEKNRNQEDNKVKDLNQEIEKLKTQIK 303
>gi|203096856 kinesin family member 7 [Homo sapiens]
Length = 1343
Score = 31.2 bits (69), Expect = 0.25
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 2 LSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGL--RALQKDLSLSEDVMV 59
L E E+VL+ +EEL EE L + I+ Q + GL + L+ +L+ED++
Sbjct: 915 LDQEMEKVLQQRRALEELGEE-LHKREAILAKKEALMQEKTGLESKRLRSSQALNEDIV- 972
Query: 60 CFGNMFIKMPHPETKEMIEK----------DQDHLDKEIEKLRKQLKVKVNRLFEAQGK 108
+ ++ H E KE+ EK Q + EI+ LR++ + + E GK
Sbjct: 973 ---RVSSRLEHLE-KELSEKSGQLRQGSAQSQQQIRGEIDSLRQEKDSLLKQRLEIDGK 1027
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 30.8 bits (68), Expect = 0.33
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 2 LSPEAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNRE----GLRALQKDLSLSEDV 57
L+ +E+ R L E ++L E++ ++++ + + K N +E G+ L + D+
Sbjct: 316 LAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDL 375
Query: 58 MVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLN 117
G E + I+K+ LD+ I ++Q+ L + + E N
Sbjct: 376 YAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDLEDTEANKEKNLEQYN 435
Query: 118 PLNQD--ELKA 126
L+QD E+KA
Sbjct: 436 KLDQDLNEVKA 446
>gi|8922633 high-mobility group 20A [Homo sapiens]
Length = 347
Score = 30.8 bits (68), Expect = 0.33
Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 38 NQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKV 97
N+ RE LRA + ++ E + GN + K+P E + +++ ++ +++L + K
Sbjct: 115 NERREQLRAKRPEVPFPE-ITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKT 173
Query: 98 KVNRLFEAQGKPELKG 113
+ ++F + + KG
Sbjct: 174 EAYKVFSRKTQDRQKG 189
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 30.8 bits (68), Expect = 0.33
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 2 LSPEAERVLRYLVEVEELAEEVLADKRQIV----DLDTKRNQNREGLRALQKDLSLSEDV 57
L E + L+ +E+ EE + I +L+ + + E +R+L+ +++ +E
Sbjct: 688 LESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNIN-TEHE 746
Query: 58 MVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLK 96
+C K H E + +EK + L+ ++EK +Q K
Sbjct: 747 KICLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFK 785
Score = 27.7 bits (60), Expect = 2.8
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 36 KRNQNR-EGLRALQKDLS--------LSEDVMVCFGNMFIKMPHPE-TKEMIEKDQDHLD 85
K N + E L+ALQ +S L + +C + + + E KE EK
Sbjct: 821 KENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKS 880
Query: 86 KEIEKLRKQLKVKVNRLFE 104
+E+ L+K+LK+K + L E
Sbjct: 881 EEVYCLQKELKIKNHSLQE 899
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 30.4 bits (67), Expect = 0.43
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 13 LVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPE 72
L E AE + +K + + + +Q RE L A Q+ +L + + ++ E
Sbjct: 774 LAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGI-LERSETE 832
Query: 73 TKEMIEKDQDHLDKEIEKLRKQLKVKVNR 101
TK+ + + L+ EI L+K+L+ +V +
Sbjct: 833 TKQRLSSQIEKLEHEISHLKKKLENEVEQ 861
Score = 27.7 bits (60), Expect = 2.8
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 36 KRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQL 95
K N + L K+L +++D + + F + TKE +E ++ L + E+L ++L
Sbjct: 84 KLNNQLKALTEKNKELEIAQDRNIAIQSQFTR-----TKEELEAEKRDLIRTNERLSQEL 138
Query: 96 KV---KVNRLFEAQGKPELKGFNLNPLNQDELKALKVILK 132
+ V RL E + L L DEL+A V +K
Sbjct: 139 EYLTEDVKRLNEKLKESNTTKGELQ-LKLDELQASDVSVK 177
Score = 27.3 bits (59), Expect = 3.7
Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 27/114 (23%)
Query: 5 EAERVLRYLVEV-----------EELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSL 53
E +R+ +YL E+ + EE ++ + L K Q + ++ LQ+D
Sbjct: 415 ENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDK 474
Query: 54 SEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQG 107
+ + ++E+D ++ +++ L +Q++V + L EA+G
Sbjct: 475 AN----------------KQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARG 512
>gi|42734430 polymerase I and transcript release factor [Homo
sapiens]
Length = 390
Score = 30.0 bits (66), Expect = 0.57
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 22/103 (21%)
Query: 14 VEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPET 73
VEVEE+ EE A++ + R GLR + +D F ++ T
Sbjct: 207 VEVEEVIEESRAERIK-----------RSGLRRV-------DDFKKAFSKEKMEKTKVRT 248
Query: 74 KEMIEKDQDHLDKEIEKLRKQLKVKVN----RLFEAQGKPELK 112
+E +EK + + +EK R L+ ++N RL A+ + +LK
Sbjct: 249 RENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAERREKLK 291
>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
Length = 2479
Score = 30.0 bits (66), Expect = 0.57
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 30/131 (22%)
Query: 13 LVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDV------------MVC 60
L E+E L EE L K++I + +R + +DL+L+E++ ++
Sbjct: 539 LKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISERKLDLLS 598
Query: 61 FGNMFIKMPHPE--TKEMIEKDQD----------------HLDKEIEKLRKQLKVKVNRL 102
NM E ++E+IEK++D L +E ++L + +K + +
Sbjct: 599 LKNMSEAQSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAI 658
Query: 103 FEAQGKPELKG 113
E Q P++KG
Sbjct: 659 KEMQKDPDVKG 669
Score = 28.9 bits (63), Expect = 1.3
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 5 EAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQ-NREGLRALQ-----KDLSLSEDVM 58
+ E+ ++ L V E AE KR++ L +Q ++E + KD S +E +
Sbjct: 2316 DLEQQIKILKHVPEGAETEQGLKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTI 2375
Query: 59 VCFGNMFIKMPHPETK-EMIEKDQDHLDKEIEKLRKQLK 96
+ K+ ET+ +M + ++ HL +EI+KL+K+L+
Sbjct: 2376 PDADQLKEKIKDLETQLKMSDLEKQHLKEEIKKLKKELE 2414
Score = 26.9 bits (58), Expect = 4.8
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 27 KRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPETKEMIEKDQDHLDK 86
K Q+ DL+ + +E L+ + + D + N K K + EK++ +D+
Sbjct: 1788 KTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEE--IDQ 1845
Query: 87 EIEKLRKQLKVKVNRLFEAQGKP 109
E ++L++Q+K + L QGKP
Sbjct: 1846 ENDELKRQIKRLTSGL---QGKP 1865
>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo
sapiens]
Length = 1478
Score = 30.0 bits (66), Expect = 0.57
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 15 EVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPETK 74
E++EL E++ A +R+ ++ Q L L K+L L ED + +K P +
Sbjct: 399 EMQELGEKLQALERERTKVEEVNRQQSAQLEQLVKELQLKEDARASLERL-VKEMAPLQE 457
Query: 75 EMIEKDQ--DHLDKEIEKL 91
E+ K Q D L + +++L
Sbjct: 458 ELSGKGQEADQLWRRLQEL 476
Score = 28.9 bits (63), Expect = 1.3
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 25/143 (17%)
Query: 5 EAERVLRYLVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDL-SLSEDVMVCFGN 63
EA+++ R L +EL + + ++ +L ++ Q +E L++++ SL+ +
Sbjct: 465 EADQLWRRL---QELLAHTSSWEEELAELRREKKQQQEEKELLEQEVRSLTRQLQFLETQ 521
Query: 64 MFIKMPH----PETKEMIEKDQDHLDKEIEKL----------------RKQLKVKVN-RL 102
+ H E K+ + +D+DHL +++ L + + V VN L
Sbjct: 522 LAQVSQHVSDLEEQKKQLIQDKDHLSQQVGMLERLAGPPGPELPVAGEKNEALVPVNSSL 581
Query: 103 FEAQGKPELKGFNLNPLNQDELK 125
EA GKPE + L D+ K
Sbjct: 582 QEAWGKPEEEQRGLQEAQLDDTK 604
>gi|217035164 coiled-coil domain containing 27 [Homo sapiens]
Length = 656
Score = 30.0 bits (66), Expect = 0.57
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 16 VEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNMFIKMPHPETKE 75
+ L ++V + Q+ ++T+ ++ LR ++ L D F N+ H E
Sbjct: 443 IASLQQQVDFQETQLRKINTENETLQKELRERRQQLQAMTDK---FSNLREDKKHQEMMG 499
Query: 76 MIEKDQDHLDKEIEKLRKQL 95
+IEKD L +++ +L ++L
Sbjct: 500 LIEKDNQLLRQQVSELERKL 519
>gi|13775238 plasmalemma vesicle associated protein [Homo sapiens]
Length = 442
Score = 30.0 bits (66), Expect = 0.57
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 15 EVEELAEEVLADKRQIV----DLDTKRNQNREGLRALQK-DLSLSEDVMVCFGNMFIKMP 69
+VEELA + AD ++ DL ++ + ++GLRA Q+ + ++ + +
Sbjct: 282 KVEELARSLRADIERVARENSDLQRQKLEAQQGLRASQEAKQKVEKEAQAREAKLQAECS 341
Query: 70 HP-----ETKEMIEKDQDHLDKEIEKLRKQ 94
E K ++ K++D+L KE+E+ +++
Sbjct: 342 RQTQLALEEKAVLRKERDNLAKELEEKKRE 371
>gi|40807469 TRAF interacting protein [Homo sapiens]
Length = 469
Score = 29.6 bits (65), Expect = 0.74
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 4 PEAERVLRYL----VEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMV 59
PE E ++R + VE+LA ++ K++ +L R + E L+KDL S +
Sbjct: 178 PEVEEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQ 237
Query: 60 CFGNMFIKMPHPETK-EMIEKDQDHLDKEIEKLRKQL 95
++ ++ + + + +KD DKEI L+K+L
Sbjct: 238 ---TVYSELDQAKLELKSAQKDLQSADKEIMSLKKKL 271
>gi|219803769 trichoplein [Homo sapiens]
Length = 498
Score = 29.6 bits (65), Expect = 0.74
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 74 KEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGK 108
+++++++QD L +E+E+LR + ++ R+ E GK
Sbjct: 88 RQLMQEEQDLLARELEELRLSMNLQERRIREQHGK 122
>gi|14150056 trichoplein [Homo sapiens]
Length = 498
Score = 29.6 bits (65), Expect = 0.74
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 74 KEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGK 108
+++++++QD L +E+E+LR + ++ R+ E GK
Sbjct: 88 RQLMQEEQDLLARELEELRLSMNLQERRIREQHGK 122
>gi|189217904 RPGRIP1-like isoform b [Homo sapiens]
Length = 1235
Score = 29.6 bits (65), Expect = 0.74
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 72 ETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLN 120
E +EMIE+ L +++ +L KQ + NRL A+ + + +G+ P N
Sbjct: 107 EMEEMIEQ----LQEKVHELEKQNETLKNRLISAKQQLQTQGYRQTPYN 151
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 29.6 bits (65), Expect = 0.74
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 72 ETKEMIEKDQDHLDKEIEKLRKQLKVKVNRLFEAQGKPELKGFNLNPLN 120
E +EMIE+ L +++ +L KQ + NRL A+ + + +G+ P N
Sbjct: 107 EMEEMIEQ----LQEKVHELEKQNETLKNRLISAKQQLQTQGYRQTPYN 151
>gi|215599562 hypothetical protein LOC89927 isoform 2 [Homo sapiens]
Length = 187
Score = 29.6 bits (65), Expect = 0.74
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 13 LVEVEELAEEVLADKRQIVDLDTKRNQNREGLRALQKDLSLSEDVMVCFGNM--FIKMPH 70
+ E + EE+ + +I L + LR + D+ L +D+M + + +P
Sbjct: 26 MAETTMMPEEIELEMAKIQRLREVLVRRESELRFMMDDIQLCKDIMDLKQELQNLVAIPE 85
Query: 71 PETKEMIEKDQDHLDKEIEKLRKQL-----KVKVNRLFEAQGKPELKGF---NLNPLNQ 121
E ++ ++ +D L ++I KL ++ +V RL E + E+ F L PL++
Sbjct: 86 KEKTKLQKQREDELIQKIHKLVQKRDFLVDDAEVERLREQEEDKEMADFLRIKLKPLDK 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,706,144
Number of Sequences: 37866
Number of extensions: 191366
Number of successful extensions: 1175
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 221
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.