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Search of human proteins with 18034690
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18034690 hypothetical protein LOC25980 [Homo sapiens]
(384 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18034690 hypothetical protein LOC25980 [Homo sapiens] 779 0.0
gi|55769583 progesterone-induced blocking factor 1 [Homo sapiens] 38 0.013
gi|197313748 SET domain containing 2 [Homo sapiens] 31 1.6
gi|239756507 PREDICTED: similar to Acyl-coenzyme A synthetase AC... 30 2.8
gi|239756505 PREDICTED: similar to Acyl-coenzyme A synthetase AC... 30 2.8
gi|58082049 acyl-CoA synthetase medium-chain family member 2A [H... 30 2.8
gi|157311624 acyl-CoA synthetase medium-chain family member 2B [... 30 2.8
gi|157311622 acyl-CoA synthetase medium-chain family member 2B [... 30 2.8
gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens] 30 2.8
gi|239752532 PREDICTED: similar to Putative uncharacterized prot... 30 3.7
gi|226442893 jumonji domain containing 2C isoform 3 [Homo sapiens] 30 4.8
gi|226442897 jumonji domain containing 2C isoform 4 [Homo sapiens] 30 4.8
gi|226442889 jumonji domain containing 2C isoform 2 [Homo sapiens] 30 4.8
gi|109255247 jumonji domain containing 2C isoform 1 [Homo sapiens] 30 4.8
gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo sapi... 29 8.1
gi|4557367 bleomycin hydrolase [Homo sapiens] 29 8.1
>gi|18034690 hypothetical protein LOC25980 [Homo sapiens]
Length = 384
Score = 779 bits (2011), Expect = 0.0
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MAAVQMDPELAKRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHY 60
MAAVQMDPELAKRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHY
Sbjct: 1 MAAVQMDPELAKRLFFEGATVVILNMPKGTEFGIDYNSWEVGPKFRGVKMIPPGIHFLHY 60
Query: 61 SSVDKANPKEVGPRMGFFLSLHQRGLTVLRWSTLREEVDLSPAPESEVEAMRANLQELDQ 120
SSVDKANPKEVGPRMGFFLSLHQRGLTVLRWSTLREEVDLSPAPESEVEAMRANLQELDQ
Sbjct: 61 SSVDKANPKEVGPRMGFFLSLHQRGLTVLRWSTLREEVDLSPAPESEVEAMRANLQELDQ 120
Query: 121 FLGPYPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRVGQNLPR 180
FLGPYPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRVGQNLPR
Sbjct: 121 FLGPYPYATLKKWISLTNFISEATVEKLQPENRQICAFSDVLPVLSMKHTKDRVGQNLPR 180
Query: 181 CGIECKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPEGATPAEITKHSMDLSYALETVL 240
CGIECKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPEGATPAEITKHSMDLSYALETVL
Sbjct: 181 CGIECKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPEGATPAEITKHSMDLSYALETVL 240
Query: 241 NKQFPSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSEAAMMKHHTLYINLIS 300
NKQFPSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSEAAMMKHHTLYINLIS
Sbjct: 241 NKQFPSSPQDVLGELQFAFVCFLLGNVYEAFEHWKRLLNLLCRSEAAMMKHHTLYINLIS 300
Query: 301 ILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVDATLRKKAEKFQAHLTKKFR 360
ILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVDATLRKKAEKFQAHLTKKFR
Sbjct: 301 ILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVDATLRKKAEKFQAHLTKKFR 360
Query: 361 WDFAAEPEDCAPVVVELPEGIEMG 384
WDFAAEPEDCAPVVVELPEGIEMG
Sbjct: 361 WDFAAEPEDCAPVVVELPEGIEMG 384
>gi|55769583 progesterone-induced blocking factor 1 [Homo sapiens]
Length = 757
Score = 38.1 bits (87), Expect = 0.013
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 94 LREEVDLSPAP-ESEVEAMRANLQELDQFLGPYPYATLKKWISLTNFISEATVEKLQPEN 152
LRE D + A E V A + L++ DQ L Y L +T F+ ++ ++ + E
Sbjct: 410 LREARDNAVAEKERAVMAEKDALEKHDQLLDRYRELQLSTESKVTEFLHQSKLKSFESER 469
Query: 153 RQICAFSDVLPVLSMKHTKDRVGQNLPRCGIECKSYQEGLARLPE--MKPRAGTEIRFSE 210
Q+ ++ +NL +C +EC+ YQ+ L L + +A +E R +E
Sbjct: 470 VQLL--------------QEETARNLTQCQLECEKYQKKLEVLTKEFYSLQASSEKRITE 515
Query: 211 LPTQ 214
L Q
Sbjct: 516 LQAQ 519
>gi|197313748 SET domain containing 2 [Homo sapiens]
Length = 2564
Score = 31.2 bits (69), Expect = 1.6
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 147 KLQPENRQICAFSDVLPVLSMKHTKDRVGQ--NLP-RCGIECKSYQEGLARLPEMKPRAG 203
K+ EN A SD L K K+ + Q N+P E +S Q +LPE K +
Sbjct: 1882 KIISENSMDSAISDATSELEGKDGKEDLDQLENVPVEEEEELQSQQLLPQQLPECKVDSE 1941
Query: 204 TEIRFSELPTQMFPEGATPAEITKHSMDLSYALETVLNKQFPSSPQD 250
T I S+LPT E AEI + LE +N++ PS ++
Sbjct: 1942 TNIEASKLPTS---EPEADAEIEPKESN-GTKLEEPINEETPSQDEE 1984
>gi|239756507 PREDICTED: similar to Acyl-coenzyme A synthetase
ACSM2B, mitochondrial isoform 2 [Homo sapiens]
Length = 571
Score = 30.4 bits (67), Expect = 2.8
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 273 HWKRLLNLLCRSEAAMMKHHTLYINLISILYHQLG--EIPADF 313
HW R + LC M TLYIN ++ Q G E+PA F
Sbjct: 2 HWLRKVQGLCTLWGTQMSSRTLYINSRQLVSLQWGHQEVPAKF 44
>gi|239756505 PREDICTED: similar to Acyl-coenzyme A synthetase
ACSM2B, mitochondrial isoform 1 [Homo sapiens]
Length = 571
Score = 30.4 bits (67), Expect = 2.8
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 273 HWKRLLNLLCRSEAAMMKHHTLYINLISILYHQLG--EIPADF 313
HW R + LC M TLYIN ++ Q G E+PA F
Sbjct: 2 HWLRKVQGLCTLWGTQMSSRTLYINSRQLVSLQWGHQEVPAKF 44
>gi|58082049 acyl-CoA synthetase medium-chain family member 2A [Homo
sapiens]
Length = 577
Score = 30.4 bits (67), Expect = 2.8
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 273 HWKRLLNLLCRSEAAMMKHHTLYINLISILYHQLG--EIPADF 313
HW R + LC M TLYIN ++ Q G E+PA F
Sbjct: 2 HWLRKVQGLCTLWGTQMSSRTLYINSRQLVSLQWGHQEVPAKF 44
>gi|157311624 acyl-CoA synthetase medium-chain family member 2B
[Homo sapiens]
Length = 577
Score = 30.4 bits (67), Expect = 2.8
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 273 HWKRLLNLLCRSEAAMMKHHTLYINLISILYHQLG--EIPADF 313
HW R + LC M TLYIN ++ Q G E+PA F
Sbjct: 2 HWLRKVQGLCTLWGTQMSSRTLYINSRQLVSLQWGHQEVPAKF 44
>gi|157311622 acyl-CoA synthetase medium-chain family member 2B
[Homo sapiens]
Length = 577
Score = 30.4 bits (67), Expect = 2.8
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 273 HWKRLLNLLCRSEAAMMKHHTLYINLISILYHQLG--EIPADF 313
HW R + LC M TLYIN ++ Q G E+PA F
Sbjct: 2 HWLRKVQGLCTLWGTQMSSRTLYINSRQLVSLQWGHQEVPAKF 44
>gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]
Length = 5183
Score = 30.4 bits (67), Expect = 2.8
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 91 WSTLREEVDLSPAPESEVEAMRANLQELDQFLGPYPYATLKKWISLTNFISEATVEKLQP 150
+S + E D + E + A LQ +D YA+ + L NF E T EK P
Sbjct: 1139 FSKMAAETDPHKSSEITKNLLPATLQLIDT------YASFTRAYLLQNFNEEGTTEK--P 1190
Query: 151 ENRQICAFSDVLPVLSMKHTKDRVG----QNLP 179
++ F+ VL + S + + +G QNLP
Sbjct: 1191 SKEKLQGFAAVLAIGSSRCKANTLGPTLVQNLP 1223
>gi|239752532 PREDICTED: similar to Putative uncharacterized protein
FLJ46348, partial [Homo sapiens]
Length = 178
Score = 30.0 bits (66), Expect = 3.7
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 159 SDVLPVLSMKHTKDRVGQNLPRCGIECKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPE 218
S LPV S+ ++ +VG P G+ S + R+ +PR+ S P Q P
Sbjct: 111 SSCLPVTSVGPSRPQVGLPRPSSGLSAASPSAKVPRVSLSRPRSSCLPVASFGPAQFMPP 170
Query: 219 GATP 222
G P
Sbjct: 171 GGLP 174
>gi|226442893 jumonji domain containing 2C isoform 3 [Homo sapiens]
Length = 813
Score = 29.6 bits (65), Expect = 4.8
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 292 HTLYINLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVDATLRKKAEKF 351
HT ++L SI Y GE P ++ L Q FF S+ S DA LR K
Sbjct: 190 HTEDMDLYSINYLHFGE-PKSWYAIPPEHGKRLERLAQGFFPSS-SQGCDAFLRHKMTLI 247
Query: 352 QAHLTKKFRWDFAAEPEDCAPVVVELPEGIEMG 384
+ KK+ F ++ ++ P G G
Sbjct: 248 SPSVLKKYGIPFDKITQEAGEFMITFPYGYHAG 280
>gi|226442897 jumonji domain containing 2C isoform 4 [Homo sapiens]
Length = 835
Score = 29.6 bits (65), Expect = 4.8
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 292 HTLYINLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVDATLRKKAEKF 351
HT ++L SI Y GE P ++ L Q FF S+ S DA LR K
Sbjct: 212 HTEDMDLYSINYLHFGE-PKSWYAIPPEHGKRLERLAQGFFPSS-SQGCDAFLRHKMTLI 269
Query: 352 QAHLTKKFRWDFAAEPEDCAPVVVELPEGIEMG 384
+ KK+ F ++ ++ P G G
Sbjct: 270 SPSVLKKYGIPFDKITQEAGEFMITFPYGYHAG 302
>gi|226442889 jumonji domain containing 2C isoform 2 [Homo sapiens]
Length = 1047
Score = 29.6 bits (65), Expect = 4.8
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 292 HTLYINLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVDATLRKKAEKF 351
HT ++L SI Y GE P ++ L Q FF S+ S DA LR K
Sbjct: 190 HTEDMDLYSINYLHFGE-PKSWYAIPPEHGKRLERLAQGFFPSS-SQGCDAFLRHKMTLI 247
Query: 352 QAHLTKKFRWDFAAEPEDCAPVVVELPEGIEMG 384
+ KK+ F ++ ++ P G G
Sbjct: 248 SPSVLKKYGIPFDKITQEAGEFMITFPYGYHAG 280
>gi|109255247 jumonji domain containing 2C isoform 1 [Homo sapiens]
Length = 1056
Score = 29.6 bits (65), Expect = 4.8
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 292 HTLYINLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSSACSIAVDATLRKKAEKF 351
HT ++L SI Y GE P ++ L Q FF S+ S DA LR K
Sbjct: 190 HTEDMDLYSINYLHFGE-PKSWYAIPPEHGKRLERLAQGFFPSS-SQGCDAFLRHKMTLI 247
Query: 352 QAHLTKKFRWDFAAEPEDCAPVVVELPEGIEMG 384
+ KK+ F ++ ++ P G G
Sbjct: 248 SPSVLKKYGIPFDKITQEAGEFMITFPYGYHAG 280
>gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo
sapiens]
Length = 1085
Score = 28.9 bits (63), Expect = 8.1
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 202 AGTEIRFSELPTQMFPEGATPAEITKHSMDLSYALETVLNKQF-----PSSPQDVLGELQ 256
+G+++ +++ F G P + + D++ ++ VL F P P++ +L
Sbjct: 544 SGSQVEVNDIKNS-FERGENPLADDQSNHDIN-SVAGVLKLYFRGLENPLFPKERFNDL- 600
Query: 257 FAFVCFLLGNVYEAFEHWKRLLNLLCRSEAAMMKHHTLYINLIS 300
C + N+YE H ++LL L RS +M++ ++N +S
Sbjct: 601 --ISCIRIDNLYERALHIRKLLLTLPRSVLIVMRYLFAFLNHLS 642
>gi|4557367 bleomycin hydrolase [Homo sapiens]
Length = 455
Score = 28.9 bits (63), Expect = 8.1
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 207 RFSELPTQMFPEGATPA------EITKHSMD-----LSYALETVLNKQFPSSPQDVLGEL 255
++ +P + FPE T +I H M L + + K S+ QDV+ E
Sbjct: 156 KYGVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEE 215
Query: 256 QFAFVCFLLGNVYEAF 271
F VC LGN E F
Sbjct: 216 IFRVVCICLGNPPETF 231
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,201,349
Number of Sequences: 37866
Number of extensions: 685878
Number of successful extensions: 1347
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1344
Number of HSP's gapped (non-prelim): 16
length of query: 384
length of database: 18,247,518
effective HSP length: 104
effective length of query: 280
effective length of database: 14,309,454
effective search space: 4006647120
effective search space used: 4006647120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.