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Search of human proteins with 171184445
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|171184445 myozenin 3 [Homo sapiens]
(251 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|171184447 myozenin 3 [Homo sapiens] 518 e-147
gi|171184445 myozenin 3 [Homo sapiens] 518 e-147
gi|7706595 myozenin 2 [Homo sapiens] 122 2e-28
gi|10864053 myozenin 1 [Homo sapiens] 79 3e-15
gi|27477041 adaptor-related protein complex 2, alpha 2 subunit [... 35 0.062
gi|33286446 opioid growth factor receptor [Homo sapiens] 35 0.081
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 35 0.081
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 35 0.081
gi|11386183 WAS protein family, member 2 [Homo sapiens] 35 0.081
gi|12707580 paired-like homeobox 2b [Homo sapiens] 35 0.081
gi|13994287 BTE-binding protein 4 [Homo sapiens] 34 0.11
gi|148612879 polyhomeotic like 3 [Homo sapiens] 34 0.14
gi|46560555 transmembrane protein 132E [Homo sapiens] 34 0.14
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 33 0.18
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 33 0.18
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 33 0.18
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 33 0.18
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 33 0.18
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 33 0.18
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 33 0.18
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 33 0.24
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 33 0.24
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 33 0.24
gi|110832843 TBP-associated factor 4 [Homo sapiens] 33 0.24
gi|4505777 PHD finger protein 1 isoform a [Homo sapiens] 33 0.31
gi|102469037 jun D proto-oncogene [Homo sapiens] 32 0.40
gi|8567388 period 3 [Homo sapiens] 32 0.40
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 32 0.40
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 32 0.40
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens] 32 0.40
>gi|171184447 myozenin 3 [Homo sapiens]
Length = 251
Score = 518 bits (1333), Expect = e-147
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MIPKEQKGPVMAAMGDLTEPVPTLDLGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQ 60
MIPKEQKGPVMAAMGDLTEPVPTLDLGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQ
Sbjct: 1 MIPKEQKGPVMAAMGDLTEPVPTLDLGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQ 60
Query: 61 KFTFELAASQRAMLAGSARRKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGP 120
KFTFELAASQRAMLAGSARRKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGP
Sbjct: 61 KFTFELAASQRAMLAGSARRKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGP 120
Query: 121 EGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSD 180
EGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSD
Sbjct: 121 EGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSD 180
Query: 181 GRSHTPSPNDYRNFNKTPVPFGGPLVGGTFPRPGTPFIPEPLSGLELLRLRPSFNRVAQG 240
GRSHTPSPNDYRNFNKTPVPFGGPLVGGTFPRPGTPFIPEPLSGLELLRLRPSFNRVAQG
Sbjct: 181 GRSHTPSPNDYRNFNKTPVPFGGPLVGGTFPRPGTPFIPEPLSGLELLRLRPSFNRVAQG 240
Query: 241 WVRNLPESEEL 251
WVRNLPESEEL
Sbjct: 241 WVRNLPESEEL 251
>gi|171184445 myozenin 3 [Homo sapiens]
Length = 251
Score = 518 bits (1333), Expect = e-147
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MIPKEQKGPVMAAMGDLTEPVPTLDLGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQ 60
MIPKEQKGPVMAAMGDLTEPVPTLDLGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQ
Sbjct: 1 MIPKEQKGPVMAAMGDLTEPVPTLDLGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQ 60
Query: 61 KFTFELAASQRAMLAGSARRKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGP 120
KFTFELAASQRAMLAGSARRKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGP
Sbjct: 61 KFTFELAASQRAMLAGSARRKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGP 120
Query: 121 EGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSD 180
EGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSD
Sbjct: 121 EGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSD 180
Query: 181 GRSHTPSPNDYRNFNKTPVPFGGPLVGGTFPRPGTPFIPEPLSGLELLRLRPSFNRVAQG 240
GRSHTPSPNDYRNFNKTPVPFGGPLVGGTFPRPGTPFIPEPLSGLELLRLRPSFNRVAQG
Sbjct: 181 GRSHTPSPNDYRNFNKTPVPFGGPLVGGTFPRPGTPFIPEPLSGLELLRLRPSFNRVAQG 240
Query: 241 WVRNLPESEEL 251
WVRNLPESEEL
Sbjct: 241 WVRNLPESEEL 251
>gi|7706595 myozenin 2 [Homo sapiens]
Length = 264
Score = 122 bits (307), Expect = 2e-28
Identities = 88/264 (33%), Positives = 133/264 (50%), Gaps = 48/264 (18%)
Query: 4 KEQKGPVMAAMGDLT-EPVPTLDLGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQKF 62
K++K A M ++ V +DLGKK+S+P+D+M+EELS +NRG+ LF+ RQRR K+
Sbjct: 9 KQRKQQATAIMKEVHGNDVDGMDLGKKVSIPRDIMLEELSHLSNRGARLFKMRQRRSDKY 68
Query: 63 TFE-LAASQRAMLAGSARRKVTGTAESGTVANANGP-EGPNYRSELHIFPASPGASLGGP 120
TFE RA + + ++A NG +G N P +P + P
Sbjct: 69 TFENFQYQSRAQI-------------NHSIAMQNGKVDGSNLEGGSQQAPLTPPNT---P 112
Query: 121 EGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSY------ 174
+ P P+P +APGY+ PLK +PPEKFN TA+ K Y+ PW++ +S
Sbjct: 113 DPRSP--------PNPDNIAPGYSGPLKEIPPEKFNTTAVPKYYQSPWEQAISNDPELLE 164
Query: 175 ----RDYQSDGRSHTPSPNDYRNFNKTPVPFGGPLVGGTFPRPGTPFI-------PEPLS 223
+ ++ +G++ P DYR+FN+ PFGG + P P +S
Sbjct: 165 ALYPKLFKPEGKAELP---DYRSFNRVATPFGGFEKASRMVKFKVPDFELLLLTDPRFMS 221
Query: 224 GLELLRLRPSFNRVAQGWV-RNLP 246
+ L R SFNR +GW+ N+P
Sbjct: 222 FVNPLSGRRSFNRTPKGWISENIP 245
>gi|10864053 myozenin 1 [Homo sapiens]
Length = 299
Score = 79.3 bits (194), Expect = 3e-15
Identities = 74/254 (29%), Positives = 104/254 (40%), Gaps = 44/254 (17%)
Query: 24 LDLGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQKFTFEL---AASQRAM------- 73
L+LGKK+SVP+D+M+EELSL NRGS +F+ RQ RV+KF +E S +M
Sbjct: 32 LNLGKKISVPRDVMLEELSLLTNRGSKMFKLRQMRVEKFIYENHPDVFSDSSMDHFQKFL 91
Query: 74 --------LAGSARRKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGPEGAHP 125
AG G+ A +G G + H + GA GG G
Sbjct: 92 PTVGGQLGTAGQGFSYSKSNGRGGSQAGGSGSAGQYGSDQQHHLGSGSGA--GGTGGPAG 149
Query: 126 AAAPAGCVPSPSALAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQS------ 179
A G + G + G + H + K Y PW+ + Q
Sbjct: 150 QAGRGGAAGTAGVGETGSGDQAGG----EGKHITVFKTYISPWERAMGVDPQQKMELGID 205
Query: 180 ----DGRSHTPSPNDYRNFNKTPVPFGGPLVGG---TFPRPG---TPFIPEPLSGL-ELL 228
++ P Y++FN+T +P+GG TF P P + EPL + L
Sbjct: 206 LLAYGAKAELPK---YKSFNRTAMPYGGYEKASKRMTFQMPKFDLGPLLSEPLVLYNQNL 262
Query: 229 RLRPSFNRVAQGWV 242
RPSFNR W+
Sbjct: 263 SNRPSFNRTPIPWL 276
>gi|27477041 adaptor-related protein complex 2, alpha 2 subunit
[Homo sapiens]
Length = 939
Score = 35.0 bits (79), Expect = 0.062
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 34 QDLMMEELSLRNNRGSLLFQKRQRRVQKFTFELAASQRAMLAGSARRKVTGTAESGTVAN 93
QD++ + LRN L +QR V+ AS + ES +A
Sbjct: 559 QDVLRSDSQLRNADVEL----QQRAVEYLRLSTVASTDILATVLEEMPPFPERESSILAK 614
Query: 94 ANGPEGPNYRSELHIFPASPGASL-GGPEGAHPAAAPAGCVPSPSA--LAPGYAEPLKGV 150
+GP+ ++L + GGPE A PA+ A PSPSA L G A P
Sbjct: 615 LKKKKGPSTVTDLEDTKRDRSVDVNGGPEPA-PASTSAVSTPSPSADLLGLGAAPPAPAG 673
Query: 151 PP 152
PP
Sbjct: 674 PP 675
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 34.7 bits (78), Expect = 0.081
Identities = 46/180 (25%), Positives = 64/180 (35%), Gaps = 33/180 (18%)
Query: 54 KRQRRVQKFTFELAA-----SQRAMLAGS---ARRKVTGTAESGTVANANGPEGPNYRSE 105
+++R+V + + AA +Q LAGS + G +E+G + G GP +
Sbjct: 456 RKRRKVDEGAGDSAAVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGT- 514
Query: 106 LHIFPASP----GASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPEKFNHTAIS 161
P SP G S GP G PA +P+ P P P EP + A
Sbjct: 515 ----PGSPSETPGPSPAGPAGDEPAESPSE-TPGPRPAGPAGDEPAESPSETPGPRPAGP 569
Query: 162 KGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGGPLVGGTFPRPGTPFIPEP 221
G D ++ S TP P+ P G PRP P EP
Sbjct: 570 AG------------DEPAESPSETPGPSPAGPTRDEPAESPSETPG---PRPAGPAGDEP 614
Score = 31.2 bits (69), Expect = 0.89
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 86 AESGTVANANGPEGPNYRSELHIFPASPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAE 145
AES + P GP +PG GP G PA +P+ P PS P E
Sbjct: 595 AESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSE-TPGPSPAGPTRDE 653
Query: 146 PLK 148
P K
Sbjct: 654 PAK 656
Score = 30.0 bits (66), Expect = 2.0
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 86 AESGTVANANGPEGPNYRSELHIFPASPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAE 145
AES + P GP +PG GP G PA +P+ P P P E
Sbjct: 575 AESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSE-TPGPRPAGPAGDE 633
Query: 146 P 146
P
Sbjct: 634 P 634
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 34.7 bits (78), Expect = 0.081
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 7/163 (4%)
Query: 26 LGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQKFTFELAASQRAMLAGSARRKVTGT 85
L + +P+ L + R G L Q++Q++ Q+ + Q+ + T
Sbjct: 192 LARGQPLPETLQLAVQGKRTLPG-LQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQ 250
Query: 86 AESGTVANANGPEGPNYRSELHIFPAS-PGASLGG-PEGAHPAAA--PAGCVPSPSAL-- 139
+ + N N P GP P P + GG P A PAAA PA VP PS
Sbjct: 251 QQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPSVPQP 310
Query: 140 APGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSDGR 182
APG P+ + ++ + I K E + R+Y+ R
Sbjct: 311 APGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQAR 353
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 34.7 bits (78), Expect = 0.081
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 7/163 (4%)
Query: 26 LGKKLSVPQDLMMEELSLRNNRGSLLFQKRQRRVQKFTFELAASQRAMLAGSARRKVTGT 85
L + +P+ L + R G L Q++Q++ Q+ + Q+ + T
Sbjct: 192 LARGQPLPETLQLAVQGKRTLPG-LQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQ 250
Query: 86 AESGTVANANGPEGPNYRSELHIFPAS-PGASLGG-PEGAHPAAA--PAGCVPSPSAL-- 139
+ + N N P GP P P + GG P A PAAA PA VP PS
Sbjct: 251 QQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPSVPQP 310
Query: 140 APGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSDGR 182
APG P+ + ++ + I K E + R+Y+ R
Sbjct: 311 APGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQAR 353
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 34.7 bits (78), Expect = 0.081
Identities = 43/144 (29%), Positives = 51/144 (35%), Gaps = 26/144 (18%)
Query: 96 GPEGPNYRSELHIFPASPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPEKF 155
GP+ + S H PA P LG P G P AP P P P+ G+PP
Sbjct: 288 GPKRSSVVSPSHPPPAPP---LGSPPGPKPGFAPPPAPPPP-------PPPMIGIPPPPP 337
Query: 156 NHTAISKGYRCPWQ--EFVSYRDYQSDGRSHTPSPNDYRNFNKTPV--PFGG-------P 204
S G P F + D+ + P DY P+ P GG P
Sbjct: 338 PVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPP 397
Query: 205 LVGGTFPRP-----GTPFIPEPLS 223
G P P G P IP PLS
Sbjct: 398 PPPGPPPPPFTGADGQPAIPPPLS 421
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 34.7 bits (78), Expect = 0.081
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 33 PQDLMMEELSLRNN----RGSLLFQKRQRRVQKFTFELAASQRAMLAGSARRKVTGTAES 88
P EEL+L+ + R + FQ R+ + +K AA+ A GS+ +K + +
Sbjct: 123 PDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDD 182
Query: 89 ------GTVANANGPEGPNYRSELHIFPASPGASLGGPEGAHPAAAPAGCVPSPSALAPG 142
T ++ G GPN S GA+ GG G PA AP P PG
Sbjct: 183 ESKEAKSTDPDSTGGPGPNPNPT-----PSCGANGGGGGGPSPAGAPGAAGPGGPGGEPG 237
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 34.3 bits (77), Expect = 0.11
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 94 ANGPEGPNYRSELHIFPASPGASLGG-----PEGAHPAAAPAGCVPSPSALAPGYAEPLK 148
A+GP GP + H+ AS A L G P GA PA++ + S APG A
Sbjct: 65 ASGP-GPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAASSPSSGRAPGAAP--- 120
Query: 149 GVPPEKFNHTAISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNF 194
+A +K +RCP+ + S +SH + R F
Sbjct: 121 ---------SAAAKSHRCPFPDCAKAYYKSSHLKSHLRTHTGERPF 157
>gi|148612879 polyhomeotic like 3 [Homo sapiens]
Length = 995
Score = 33.9 bits (76), Expect = 0.14
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 185 TPSPNDYRNFNKTPVPFGGPLVGGTFPRPGTPFIPEPLSGLELLRLRPSFNRVAQGWVRN 244
+PS Y + +P+P P T P P P PL ++ L+++P Q V+N
Sbjct: 495 SPSHQQYSSLQSSPIPIASPPQMSTSPPAQIP--PLPLQSMQSLQVQPEILSQGQVLVQN 552
Query: 245 LPESEE 250
SEE
Sbjct: 553 ALVSEE 558
>gi|46560555 transmembrane protein 132E [Homo sapiens]
Length = 984
Score = 33.9 bits (76), Expect = 0.14
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 110 PASPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKGVPP 152
P+ PG GG + A A P +P+P A PG A P+ VPP
Sbjct: 737 PSQPGPG-GGEDEARGAGPPGSALPAPEAPGPGTASPV--VPP 776
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 33.5 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 112 SPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKG-------------VPPEKFNHT 158
SPGA LG G P +A + PSP + G+ P +G P E +
Sbjct: 23 SPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEK 82
Query: 159 AISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGG 203
+S R + + R G PSP D ++ P P GG
Sbjct: 83 GMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMD-QHSQGYPSPLGG 126
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 33.5 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 112 SPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKG-------------VPPEKFNHT 158
SPGA LG G P +A + PSP + G+ P +G P E +
Sbjct: 23 SPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEK 82
Query: 159 AISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGG 203
+S R + + R G PSP D ++ P P GG
Sbjct: 83 GMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMD-QHSQGYPSPLGG 126
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 33.5 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 112 SPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKG-------------VPPEKFNHT 158
SPGA LG G P +A + PSP + G+ P +G P E +
Sbjct: 23 SPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEK 82
Query: 159 AISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGG 203
+S R + + R G PSP D ++ P P GG
Sbjct: 83 GMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMD-QHSQGYPSPLGG 126
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 33.5 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 112 SPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKG-------------VPPEKFNHT 158
SPGA LG G P +A + PSP + G+ P +G P E +
Sbjct: 23 SPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEK 82
Query: 159 AISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGG 203
+S R + + R G PSP D ++ P P GG
Sbjct: 83 GMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMD-QHSQGYPSPLGG 126
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 33.5 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 112 SPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKG-------------VPPEKFNHT 158
SPGA LG G P +A + PSP + G+ P +G P E +
Sbjct: 23 SPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEK 82
Query: 159 AISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGG 203
+S R + + R G PSP D ++ P P GG
Sbjct: 83 GMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMD-QHSQGYPSPLGG 126
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.5 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 112 SPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKG-------------VPPEKFNHT 158
SPGA LG G P +A + PSP + G+ P +G P E +
Sbjct: 23 SPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEK 82
Query: 159 AISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGG 203
+S R + + R G PSP D ++ P P GG
Sbjct: 83 GMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMD-QHSQGYPSPLGG 126
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.5 bits (75), Expect = 0.18
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 112 SPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKG-------------VPPEKFNHT 158
SPGA LG G P +A + PSP + G+ P +G P E +
Sbjct: 23 SPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEK 82
Query: 159 AISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGG 203
+S R + + R G PSP D ++ P P GG
Sbjct: 83 GMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMD-QHSQGYPSPLGG 126
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.24
Identities = 41/146 (28%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 80 RKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGPEGAHPAAAPAGCVPSPSA- 138
R G + SGT +A P ++S + PA+PG P + A+PA P +A
Sbjct: 91 RSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR---PGCSSARASPAPAAPQAAAR 147
Query: 139 LAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTP 198
APG A P G R + V R ++ G+ P P R P
Sbjct: 148 TAPGRAASGGSGP-----------GSRGQGSDQVGARPSRAGGQ---PPPLTCRRCRAAP 193
Query: 199 VPFGGPLVGGTFPRPGTPFIPEPLSG 224
P F RPG P P SG
Sbjct: 194 RRSARP-----FRRPGLPLKSRPGSG 214
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.24
Identities = 41/146 (28%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 80 RKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGPEGAHPAAAPAGCVPSPSA- 138
R G + SGT +A P ++S + PA+PG P + A+PA P +A
Sbjct: 91 RSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR---PGCSSARASPAPAAPQAAAR 147
Query: 139 LAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTP 198
APG A P G R + V R ++ G+ P P R P
Sbjct: 148 TAPGRAASGGSGP-----------GSRGQGSDQVGARPSRAGGQ---PPPLTCRRCRAAP 193
Query: 199 VPFGGPLVGGTFPRPGTPFIPEPLSG 224
P F RPG P P SG
Sbjct: 194 RRSARP-----FRRPGLPLKSRPGSG 214
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.24
Identities = 41/146 (28%), Positives = 54/146 (36%), Gaps = 23/146 (15%)
Query: 80 RKVTGTAESGTVANANGPEGPNYRSELHIFPASPGASLGGPEGAHPAAAPAGCVPSPSA- 138
R G + SGT +A P ++S + PA+PG P + A+PA P +A
Sbjct: 91 RSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPR---PGCSSARASPAPAAPQAAAR 147
Query: 139 LAPGYAEPLKGVPPEKFNHTAISKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTP 198
APG A P G R + V R ++ G+ P P R P
Sbjct: 148 TAPGRAASGGSGP-----------GSRGQGSDQVGARPSRAGGQ---PPPLTCRRCRAAP 193
Query: 199 VPFGGPLVGGTFPRPGTPFIPEPLSG 224
P F RPG P P SG
Sbjct: 194 RRSARP-----FRRPGLPLKSRPGSG 214
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 33.1 bits (74), Expect = 0.24
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 110 PASPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKGVPP 152
PA+PG + P AA PA PSP A AP A P PP
Sbjct: 231 PAAPGTVIQTPPFVGAAAPPAPAAPSPPA-APAPAAPAAAPPP 272
>gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
Length = 457
Score = 32.7 bits (73), Expect = 0.31
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 112 SPGASLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPE---KFNHTAIS 161
+PGA G AAAP+GC+ PS L P PL V P+ +N T +S
Sbjct: 395 APGAEGAGSSAEGTAAAPSGCL-LPSTLLPAPQGPLGTVDPQTGHPWNFTLVS 446
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 32.3 bits (72), Expect = 0.40
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 67 AASQRAMLAGSARRKVTGTAESGTVANANG-PEGPNYRSELHIFPASPGASLGGPEGAHP 125
AA+ A AG TG+A G +A A PE P Y + +S GG GA
Sbjct: 158 AAAAAAAAAGGPSGTATGSAPPGELAPAAAAPEAPVYANL-----SSYAGGAGGAGGAAT 212
Query: 126 AAAPAGCVPSPSALAPGYAEP 146
A A VP P PG P
Sbjct: 213 VAFAAEPVPFPPPPPPGALGP 233
>gi|8567388 period 3 [Homo sapiens]
Length = 1201
Score = 32.3 bits (72), Expect = 0.40
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 17/138 (12%)
Query: 49 SLLFQKRQRRVQKFTFEL--AASQRAMLAG--SARRKVTGTAESGTVANANGPEGPNYRS 104
S Q+ R K+++ + S++ AG + K E +++N GP +
Sbjct: 704 SSYLQQESRSKAKYSYFQGDSTSKQTRSAGCRKGKHKRKKLPEPPDSSSSNTGSGPRRGA 763
Query: 105 ELHIFPASPGASLGGPEGAHPAAAPAGCVPS-----------PSALAPGYAEPLKGVPPE 153
+ P P A+ P + P PA VPS P+A +PG G PE
Sbjct: 764 HQNAQPCCPSAA-SSPHTSSPTFPPAAMVPSQAPYLVPAFPLPAATSPGREYAAPGTAPE 822
Query: 154 KFNHTAISKGYRCPWQEF 171
+ +S+G + P+ F
Sbjct: 823 GLHGLPLSEGLQ-PYPAF 839
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 32.3 bits (72), Expect = 0.40
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 18/80 (22%)
Query: 84 GTAESGTVANANGPEGPNYRSELHIFPASPGASLGGPEGAHPAAAPAGCVPSPSALAP-- 141
G G +AN P GP + FP PG + GP G P G V P L P
Sbjct: 618 GLLGPGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHG-----GPGGPV-GPRLLGPPP 671
Query: 142 ----------GYAEPLKGVP 151
G +P++G P
Sbjct: 672 PPRGGDPFWDGPGDPMRGGP 691
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 32.3 bits (72), Expect = 0.40
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 74 LAGSARRKVTGTAESGTVANANGPEGPNYRSEL---HIFPASPGASLGGPEG 122
L G+A+ A + P P R H+FPASPGA+L GP G
Sbjct: 231 LCGAAQPSSASFACLSLCSGPPPPPAPTCRGPTLLQHVFPASPGATLVGPHG 282
>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
Length = 4303
Score = 32.3 bits (72), Expect = 0.40
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 74 LAGSARRKVTGTAESGTVANANGPEGPNYRSEL---HIFPASPGASLGGPEG 122
L G+A+ A + P P R H+FPASPGA+L GP G
Sbjct: 231 LCGAAQPSSASFACLSLCSGPPPPPAPTCRGPTLLQHVFPASPGATLVGPHG 282
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,505,342
Number of Sequences: 37866
Number of extensions: 779698
Number of successful extensions: 3132
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 2848
Number of HSP's gapped (non-prelim): 458
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.