Search of human proteins with 171184433

Search of human proteins with 171184433

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|171184433 outer dense fiber of sperm tails 4 [Homo sapiens]
         (257 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|171184433 outer dense fiber of sperm tails 4 [Homo sapiens]        528   e-150
gi|122937323 transmembrane protein 202 [Homo sapiens]                  31   1.2  
gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domai...    30   2.7  
gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain...    30   2.7  
gi|55741849 WD repeat domain 22 [Homo sapiens]                         29   4.6  
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ...    29   4.6  
gi|229892328 IQ motif containing C isoform 1 [Homo sapiens]            28   6.0  
gi|229892326 IQ motif containing C isoform 2 [Homo sapiens]            28   6.0  
gi|85540447 solute carrier family 26, member 11 [Homo sapiens]         28   6.0  
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    28   6.0  
gi|58761535 zinc finger protein 518B [Homo sapiens]                    28   6.0  
gi|7706671 peroxisomal biogenesis factor 5-like [Homo sapiens]         28   6.0  
gi|10880975 hypothetical protein LOC57821 [Homo sapiens]               28   6.0  
gi|110835710 sodium channel, voltage-gated, type X, alpha [Homo ...    28   7.9  
gi|117168263 RasGEF domain family, member 1A [Homo sapiens]            28   7.9  

>gi|171184433 outer dense fiber of sperm tails 4 [Homo sapiens]
          Length = 257

 Score =  528 bits (1360), Expect = e-150
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MDAEYSGNEFPRSEGERDQHQRPGKERKSGEAGWGTGELGQDGRLLSSTLSLSSNRSLGQ 60
           MDAEYSGNEFPRSEGERDQHQRPGKERKSGEAGWGTGELGQDGRLLSSTLSLSSNRSLGQ
Sbjct: 1   MDAEYSGNEFPRSEGERDQHQRPGKERKSGEAGWGTGELGQDGRLLSSTLSLSSNRSLGQ 60

Query: 61  RQNSPLPFQWRITHSFRWMAQVLASELSLVAFILLLVVAFSKKWLDLSRSLFYQRWPVDV 120
           RQNSPLPFQWRITHSFRWMAQVLASELSLVAFILLLVVAFSKKWLDLSRSLFYQRWPVDV
Sbjct: 61  RQNSPLPFQWRITHSFRWMAQVLASELSLVAFILLLVVAFSKKWLDLSRSLFYQRWPVDV 120

Query: 121 SNRIHTSAHVMSMGLLHFYKSRSCSDLENGKVTFIFSTLMLFPINIWIFELERNVSIPIG 180
           SNRIHTSAHVMSMGLLHFYKSRSCSDLENGKVTFIFSTLMLFPINIWIFELERNVSIPIG
Sbjct: 121 SNRIHTSAHVMSMGLLHFYKSRSCSDLENGKVTFIFSTLMLFPINIWIFELERNVSIPIG 180

Query: 181 WSYFIGWLVLILYFTCAILCYFNHKSFWSLILSHPSGAVSCSSSFGSVEESPRAQTITDT 240
           WSYFIGWLVLILYFTCAILCYFNHKSFWSLILSHPSGAVSCSSSFGSVEESPRAQTITDT
Sbjct: 181 WSYFIGWLVLILYFTCAILCYFNHKSFWSLILSHPSGAVSCSSSFGSVEESPRAQTITDT 240

Query: 241 PITQEGVLDPEQKDTHV 257
           PITQEGVLDPEQKDTHV
Sbjct: 241 PITQEGVLDPEQKDTHV 257


>gi|122937323 transmembrane protein 202 [Homo sapiens]
          Length = 273

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 146 DLENGKVTFIFSTLMLFPINIWIFELERN----VSIPIGWSYFIGWLVLILYFTCAILCY 201
           DL+   ++FI +T +L  +N+++ ++  +    +   + W+Y++ W   I Y    I+  
Sbjct: 152 DLKVSMLSFISATCLLLCLNLFVAQVHWHTRDAMESDLLWTYYLNWCSDIFYMFAGIISL 211

Query: 202 FNH 204
            N+
Sbjct: 212 LNY 214


>gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
           isoform b [Homo sapiens]
          Length = 894

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 11  PRSEGERDQHQRPGKERKSGEAGWGTGELGQDGRLLSSTLSLSSNRSLGQRQNSPLPFQW 70
           P S+ E D+ ++    +   +A W +G L    +   +  SL +    G+ ++ P P   
Sbjct: 689 PGSDSEEDEEEKRCLLKLPAQAHWASGRLDISNKTYETVASLGAATPQGESEDCPPPLP- 747

Query: 71  RITHSFRWMAQVLASELS 88
            + +S R + Q  A   S
Sbjct: 748 -VKNSSRTLVQGCARHAS 764


>gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
           isoform a [Homo sapiens]
          Length = 903

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 11  PRSEGERDQHQRPGKERKSGEAGWGTGELGQDGRLLSSTLSLSSNRSLGQRQNSPLPFQW 70
           P S+ E D+ ++    +   +A W +G L    +   +  SL +    G+ ++ P P   
Sbjct: 698 PGSDSEEDEEEKRCLLKLPAQAHWASGRLDISNKTYETVASLGAATPQGESEDCPPPLP- 756

Query: 71  RITHSFRWMAQVLASELS 88
            + +S R + Q  A   S
Sbjct: 757 -VKNSSRTLVQGCARHAS 773


>gi|55741849 WD repeat domain 22 [Homo sapiens]
          Length = 942

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 200 CYFNHKSFWSLILSHPSGAVSCSSSFGSVEESPRAQTITDTPITQE 245
           C + H+ + SL+L+  SG +S   +  SV+E PR     D+ + +E
Sbjct: 382 CLYTHEEYISLVLNSGSG-LSHDYANQSVQEDPRMMAFFDSLVRRE 426


>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
           [Homo sapiens]
          Length = 1008

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 23  PGKERKSGEAGWGTGELGQDGRLLSSTLSLSSNRSLGQRQNSP 65
           PG   K+G    GTG  G  GRL  + L ++   S+G  +  P
Sbjct: 323 PGSSGKNGPVSSGTGAPGSLGRLDPTCLGMADPASVGNVETVP 365


>gi|229892328 IQ motif containing C isoform 1 [Homo sapiens]
          Length = 546

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 8   NEFPRSEGERDQHQRPGKERKSGEAGWGTGELGQDGRLLSSTLSLSSNRSLGQ------- 60
           N FP  E E +        +KSGE+    G L +D    SS L +  NR   Q       
Sbjct: 165 NHFPCEESEGEATWEEMVLKKSGESSANQGSLCRDH---SSWLQMKQNRKPSQEKTRDTT 221

Query: 61  RQNSPLPFQWRITHSFRWMAQVLASELSLVAFILLLVVAFS--KKWLDLSRSL 111
           R  +P     R+ HS   + ++      L   +L L  A +  K++L L ++L
Sbjct: 222 RMENPEATDQRLPHSQPQLQELQYHRSHLAMELLWLQQAINSRKEYLLLKQTL 274


>gi|229892326 IQ motif containing C isoform 2 [Homo sapiens]
          Length = 466

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 8   NEFPRSEGERDQHQRPGKERKSGEAGWGTGELGQDGRLLSSTLSLSSNRSLGQ------- 60
           N FP  E E +        +KSGE+    G L +D    SS L +  NR   Q       
Sbjct: 85  NHFPCEESEGEATWEEMVLKKSGESSANQGSLCRDH---SSWLQMKQNRKPSQEKTRDTT 141

Query: 61  RQNSPLPFQWRITHSFRWMAQVLASELSLVAFILLLVVAFS--KKWLDLSRSL 111
           R  +P     R+ HS   + ++      L   +L L  A +  K++L L ++L
Sbjct: 142 RMENPEATDQRLPHSQPQLQELQYHRSHLAMELLWLQQAINSRKEYLLLKQTL 194


>gi|85540447 solute carrier family 26, member 11 [Homo sapiens]
          Length = 606

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 49  TLSLSSNRSLGQRQNSPLPFQWRITHSFRWMAQVLASE--LSLVAFILLLVV 98
           T+     ++L   QN P PF  ++ H+F  +A+    +  L LV  +LLLV+
Sbjct: 164 TIGFGQIKNLLGLQNIPRPFFLQVYHTFLRIAETRVGDAVLGLVCMLLLLVL 215


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
           sapiens]
          Length = 1152

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 2   DAEYSGNEFPRSEGERDQHQRPGKERKSGEAG-WGTGE 38
           + E    E  + EGER + +R GKE K  E G  G GE
Sbjct: 760 EGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGE 797


>gi|58761535 zinc finger protein 518B [Homo sapiens]
          Length = 1074

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 12/23 (52%), Positives = 18/23 (78%)

Query: 35  GTGELGQDGRLLSSTLSLSSNRS 57
           G+ EL + GRLLS +LS+S N++
Sbjct: 869 GSSELNKQGRLLSRSLSISRNKT 891


>gi|7706671 peroxisomal biogenesis factor 5-like [Homo sapiens]
          Length = 626

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 15  GERDQHQRPGKERKSGEAGWGTGELGQDGRLLSSTLSLSSNRSLGQRQNSPL----PFQW 70
           G+R+    P  ERKS  +  G+ EL       S         +L     S L    P Q 
Sbjct: 184 GDRNTKGHPMAERKSSSSRTGSKELLWSSEHRSQPELSGGKSALNSESASELELVAPTQA 243

Query: 71  RITHSFRWMAQVLASELSL 89
           R+T   RW + +L+   SL
Sbjct: 244 RLTKEHRWGSALLSRNHSL 262


>gi|10880975 hypothetical protein LOC57821 [Homo sapiens]
          Length = 508

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 215 PSGAVSCSSSFGSVEESPRAQTITDTPITQEGVLDPEQKD 254
           PS AV+   S G+ + + R Q+   +P+T    L P QK+
Sbjct: 302 PSSAVNSDRSKGNGKSNHRTQSAHISPVTSTYCLSPRQKE 341


>gi|110835710 sodium channel, voltage-gated, type X, alpha [Homo
            sapiens]
          Length = 1956

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 42   DGRLLSSTLSLSSNRSLGQRQNSPLPFQWRITHSFRWMAQVLASELSLVAFILLLVVAFS 101
            DG      LS+ +N+S  + QNS        T SF W+   +  +   + ++ LL VA  
Sbjct: 1315 DGEFSLVPLSIVNNKSDCKIQNS--------TGSFFWVNVKVNFDNVAMGYLALLQVATF 1366

Query: 102  KKWLDL 107
            K W+D+
Sbjct: 1367 KGWMDI 1372


>gi|117168263 RasGEF domain family, member 1A [Homo sapiens]
          Length = 481

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 22 RPGKERKSGEAGWGTGEL-GQDGRLLSSTL 50
          +PG   + G AG G+G+L  QDG L+S +L
Sbjct: 21 QPGMGERGGGAGGGSGDLIFQDGHLISGSL 50


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,052,647
Number of Sequences: 37866
Number of extensions: 422943
Number of successful extensions: 1355
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1336
Number of HSP's gapped (non-prelim): 28
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.