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Search of human proteins with 169217928
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169217928 PREDICTED: similar to piwi like homolog 2 [Homo
sapiens]
(349 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217928 PREDICTED: similar to piwi like homolog 2 [Homo sap... 701 0.0
gi|209180418 piwi-like 2 [Homo sapiens] 594 e-170
gi|24431985 piwi-like 2 [Homo sapiens] 594 e-170
gi|66346725 piwi-like 1 [Homo sapiens] 234 7e-62
gi|221316711 piwi-like 4 [Homo sapiens] 182 5e-46
gi|153792298 piwi-like 3 [Homo sapiens] 171 1e-42
gi|6912352 eukaryotic translation initiation factor 2C, 1 [Homo ... 60 2e-09
gi|29171734 eukaryotic translation initiation factor 2C, 2 [Homo... 50 4e-06
gi|29337286 eukaryotic translation initiation factor 2C, 3 isofo... 50 4e-06
gi|29294647 eukaryotic translation initiation factor 2C, 3 isofo... 50 4e-06
gi|156071465 Rho GTPase activating protein 4 [Homo sapiens] 33 0.29
gi|15055539 ribosomal protein S2 [Homo sapiens] 29 5.5
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 28 9.4
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 28 9.4
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 28 9.4
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 28 9.4
gi|46409282 OTU domain containing 6A [Homo sapiens] 28 9.4
>gi|169217928 PREDICTED: similar to piwi like homolog 2 [Homo
sapiens]
Length = 349
Score = 701 bits (1810), Expect = 0.0
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MKKDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGR 60
MKKDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGR
Sbjct: 1 MKKDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGR 60
Query: 61 VLPMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLE 120
VLPMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLE
Sbjct: 61 VLPMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLE 120
Query: 121 KIAGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKK 180
KIAGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKK
Sbjct: 121 KIAGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKK 180
Query: 181 LCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMDV 240
LCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMDV
Sbjct: 181 LCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMDV 240
Query: 241 YHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYEAAQSS 300
YHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYEAAQSS
Sbjct: 241 YHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYEAAQSS 300
Query: 301 SFQASACTDQLKELNAFIWFRMAVTTGSSNTSEQLPPYTFSAPFCITAR 349
SFQASACTDQLKELNAFIWFRMAVTTGSSNTSEQLPPYTFSAPFCITAR
Sbjct: 301 SFQASACTDQLKELNAFIWFRMAVTTGSSNTSEQLPPYTFSAPFCITAR 349
>gi|209180418 piwi-like 2 [Homo sapiens]
Length = 973
Score = 594 bits (1531), Expect = e-170
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MKKDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGR 60
MKKDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGR
Sbjct: 507 MKKDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGR 566
Query: 61 VLPMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLE 120
VLPMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLE
Sbjct: 567 VLPMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLE 626
Query: 121 KIAGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKK 180
KIAGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKK
Sbjct: 627 KIAGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKK 686
Query: 181 LCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMDV 240
LCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMDV
Sbjct: 687 LCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMDV 746
Query: 241 YHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYE 295
YHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYE
Sbjct: 747 YHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYE 801
>gi|24431985 piwi-like 2 [Homo sapiens]
Length = 973
Score = 594 bits (1531), Expect = e-170
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MKKDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGR 60
MKKDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGR
Sbjct: 507 MKKDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGR 566
Query: 61 VLPMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLE 120
VLPMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLE
Sbjct: 567 VLPMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLE 626
Query: 121 KIAGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKK 180
KIAGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKK
Sbjct: 627 KIAGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKK 686
Query: 181 LCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMDV 240
LCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMDV
Sbjct: 687 LCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMDV 746
Query: 241 YHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYE 295
YHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYE
Sbjct: 747 YHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYE 801
>gi|66346725 piwi-like 1 [Homo sapiens]
Length = 861
Score = 234 bits (598), Expect = 7e-62
Identities = 123/292 (42%), Positives = 173/292 (59%), Gaps = 4/292 (1%)
Query: 1 MKKDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGR 60
M+ DF MKDLA L+P+Q + L+ I KN+ EL WGL ++ GR
Sbjct: 396 MRNDFNVMKDLAVHTRLTPEQRQREVGRLIDYIHKNDNVQRELRDWGLSFDSNLLSFSGR 455
Query: 61 VLPMERINLKNTSF-ITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNML 119
+L E+I+ +F Q +W KE P I P+ W L Y +R + A L+ L
Sbjct: 456 ILQTEKIHQGGKTFDYNPQFADWSKETRGAPLISVKPLDNWLLIYTRRNYEAANSLIQNL 515
Query: 120 EKIAGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIK 179
K+ +GM+M +E+ DDR E Y+R +Q + A+ Q+VVC++ R D Y AIK
Sbjct: 516 FKVTPAMGMQMRKAIMIEV-DDRTEAYLRVLQQKVTAD--TQIVVCLLSSNRKDKYDAIK 572
Query: 180 KLCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMD 239
K C P PSQ V RT+G+ + ++A KI LQ+NCK+GGELW VDIPLK +M++G+D
Sbjct: 573 KYLCTDCPTPSQCVVARTLGKQQTVMAIATKIALQMNCKMGGELWRVDIPLKLVMIVGID 632
Query: 240 VYHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLK 291
YHD + G RS+ GFVASIN +T+W+SR +FQ QE+VD LK+CL +L+
Sbjct: 633 CYHDMTAGRRSIAGFVASINEGMTRWFSRCIFQDRGQELVDGLKVCLQAALR 684
>gi|221316711 piwi-like 4 [Homo sapiens]
Length = 852
Score = 182 bits (461), Expect = 5e-46
Identities = 111/339 (32%), Positives = 181/339 (53%), Gaps = 11/339 (3%)
Query: 4 DFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGRVLP 63
DF+ MK +A++ LSP L L+ I +N A EL WGL + + GR++P
Sbjct: 392 DFQLMKAVAEKTRLSPSGRQQRLARLVDNIQRNTNARFELETWGLHFGSQI-SLTGRIVP 450
Query: 64 MERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLEKIA 123
E+I +++ +W K++ + ++ W + R A +N L ++A
Sbjct: 451 SEKILMQDHICQPVSAADWSKDIRTCKILNAQSLNTWLILCSDRTEYVAESFLNCLRRVA 510
Query: 124 GPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKKLCC 183
G +G + P ++++++ +VR IQ + + +Q+V+CI+ + Y +IKK
Sbjct: 511 GSMGFNVDYPKIIKVQENPA-AFVRAIQQYVDPD--VQLVMCILPSNQKTYYDSIKKYLS 567
Query: 184 VQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMVIGMDVYHD 243
PVPSQ V RT+ + + S+A KI +Q+ CKLGGELW V+IPLK LMV+G+DV D
Sbjct: 568 SDCPVPSQCVLARTLNKQGMMMSIATKIAMQMTCKLGGELWAVEIPLKSLMVVGIDVCKD 627
Query: 244 PSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYE-----AAQ 298
VVG VAS+N +T+W+SR + Q ++ D LK+ + G+L K+Y+ A+
Sbjct: 628 ALSKDVMVVGCVASVNPRITRWFSRCILQRTMTDVADCLKVFMTGALNKWYKYNHDLPAR 687
Query: 299 SSSFQASACTDQLKELNAFIWFRM--AVTTGSSNTSEQL 335
++A QLK L + ++ +V SSNTS +L
Sbjct: 688 IIVYRAGVGDGQLKTLIEYEVPQLLSSVAESSSNTSSRL 726
>gi|153792298 piwi-like 3 [Homo sapiens]
Length = 882
Score = 171 bits (432), Expect = 1e-42
Identities = 92/297 (30%), Positives = 158/297 (53%), Gaps = 13/297 (4%)
Query: 3 KDFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGRVL 62
KD+ +K+LA+ LSP++ H L+ + + N+ L W L+ + + GRVL
Sbjct: 413 KDYSIVKELAKHTRLSPRRRHHTLKEFINTLQDNKKVRELLQLWDLKFDTNFLSVPGRVL 472
Query: 63 PMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPKRAMDQARELVNMLEKI 122
I + + +W +E+ P + +P+H W + Y + + +A L L+ +
Sbjct: 473 KNANIVQGRRMVKANSQGDWSREIRELPLLNAMPLHSWLILYSRSSHREAMSLKGHLQSV 532
Query: 123 AGPIGMRMSPPAWVELKDDRIETYVRTIQSTLGAEGKIQM-------VVCIIMGPRDDL- 174
P+G+ M P +E+ D +Y+ T++ ++ M V+CI+ P DD
Sbjct: 533 TAPMGITMKPAEMIEVDGDA-NSYIDTLRKYTRPTLQMGMSCLLVFKVICIL--PNDDKR 589
Query: 175 -YGAIKKLCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCKLGGELWGVDIPLKQL 233
Y +IK+ C + P+PSQ V +T+ + + R++ KI Q+NCK+GG LW V+ +++
Sbjct: 590 RYDSIKRYLCTKCPIPSQCVVKKTL-EKVQARTIVTKIAQQMNCKMGGALWKVETDVQRT 648
Query: 234 MVIGMDVYHDPSRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSL 290
M +G+D +HD +S+ GFVAS N LTKWYS+ V Q +E+V L++CL +L
Sbjct: 649 MFVGIDCFHDIVNRQKSIAGFVASTNAELTKWYSQCVIQKTGEELVKELEICLKAAL 705
>gi|6912352 eukaryotic translation initiation factor 2C, 1 [Homo
sapiens]
Length = 857
Score = 60.5 bits (145), Expect = 2e-09
Identities = 62/287 (21%), Positives = 136/287 (47%), Gaps = 25/287 (8%)
Query: 30 LQRIAKNEAATNE--LMRWGLRLQKDVHKIEGRVLPMERINL--KNTSFITSQELNWVKE 85
+ R+ KN + + + +G++++ D+ ++ GRVLP + +N + T + W
Sbjct: 377 ISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMR 436
Query: 86 VTRDPSILTIPMHFWALFYPKRAMDQA--RELVNMLEKIAGPIGMRMS-PPAWVELKD-- 140
+ + + I + A F P++ + + + L KI+ GM + P + +
Sbjct: 437 GKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGA 496
Query: 141 DRIETYVRTIQSTLGAEGKIQMVVCIIMGPRDDLYGAIKKLCCVQSPVPSQVVNVRTIGQ 200
D +E R +++T +Q+++ I+ G + +Y +K++ + +Q V V+ + +
Sbjct: 497 DSVEPMFRHLKNTYSG---LQLIIVILPG-KTPVYAEVKRVGDTLLGMATQCVQVKNVVK 552
Query: 201 PTRLRSVAQKILLQINCKLGGELWGVDIPLKQLMV-------IGMDVYHDPSRGMR--SV 251
+ + L+IN KLGG + + +P ++ V +G DV H P+ + S+
Sbjct: 553 TSP--QTLSNLCLKINVKLGG-INNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSI 609
Query: 252 VGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLCLVGSLKKFYEAAQ 298
V S++ +++ + V Q P QEI++ L + L +FY++ +
Sbjct: 610 TAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTR 656
>gi|29171734 eukaryotic translation initiation factor 2C, 2 [Homo
sapiens]
Length = 859
Score = 49.7 bits (117), Expect = 4e-06
Identities = 58/269 (21%), Positives = 120/269 (44%), Gaps = 23/269 (8%)
Query: 46 WGLRLQKDVHKIEGRVLPMERINLKNTSFITSQELNWVKEVTRDPSILTIPMHFWAL--F 103
+G+ ++ ++ + GRVL I + + + V ++ I + WA+ F
Sbjct: 397 FGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACF 456
Query: 104 YPKRAMDQA--RELVNMLEKIAGPIGMRMS-PPAWVELKD--DRIETYVRTIQSTLGAEG 158
P+R + + L KI+ GM + P + + D +E R +++T
Sbjct: 457 APQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAG-- 514
Query: 159 KIQMVVCIIMGPRDDLYGAIKKLCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCK 218
+Q+VV I+ G + +Y +K++ + +Q V ++ + + T + L+IN K
Sbjct: 515 -LQLVVVILPG-KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTP--QTLSNLCLKINVK 570
Query: 219 LGGELWGVDIPL-------KQLMVIGMDVYHDPSRGMR--SVVGFVASINLTLTKWYSRV 269
LGG + + +P + ++ +G DV H P+ + S+ V S++ ++ + V
Sbjct: 571 LGG-VNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATV 629
Query: 270 VFQMPHQEIVDSLKLCLVGSLKKFYEAAQ 298
Q QEI+ L + L +FY++ +
Sbjct: 630 RVQQHRQEIIQDLAAMVRELLIQFYKSTR 658
>gi|29337286 eukaryotic translation initiation factor 2C, 3 isoform
b [Homo sapiens]
Length = 626
Score = 49.7 bits (117), Expect = 4e-06
Identities = 60/269 (22%), Positives = 124/269 (46%), Gaps = 29/269 (10%)
Query: 49 RLQKDVHKIEGRVLPMERINL--KNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPK 106
+++ ++ + GRVLP + +N + T W + + + I M A F +
Sbjct: 167 KVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQ 226
Query: 107 RAMDQARELV-----NMLEKIAGPIGMRMS-PPAWVELKD--DRIETYVRTIQSTLGAEG 158
R Q RE + + L KI+ GM + P + + D +E R +++T
Sbjct: 227 R---QCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSG-- 281
Query: 159 KIQMVVCIIMGPRDDLYGAIKKLCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCK 218
+Q+++ I+ G + +Y +K++ + +Q V V+ + + + + L+IN K
Sbjct: 282 -LQLIIVILPG-KTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSP--QTLSNLCLKINVK 337
Query: 219 LGGELWGVDIPLKQ-------LMVIGMDVYHDPSRGMR--SVVGFVASINLTLTKWYSRV 269
LGG + + +P ++ ++ +G DV H P+ + S+ V S++ +++ + V
Sbjct: 338 LGG-INNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATV 396
Query: 270 VFQMPHQEIVDSLKLCLVGSLKKFYEAAQ 298
Q P QEI+ L + L +FY++ +
Sbjct: 397 RVQRPRQEIIQDLASMVRELLIQFYKSTR 425
>gi|29294647 eukaryotic translation initiation factor 2C, 3 isoform
a [Homo sapiens]
Length = 860
Score = 49.7 bits (117), Expect = 4e-06
Identities = 60/269 (22%), Positives = 124/269 (46%), Gaps = 29/269 (10%)
Query: 49 RLQKDVHKIEGRVLPMERINL--KNTSFITSQELNWVKEVTRDPSILTIPMHFWALFYPK 106
+++ ++ + GRVLP + +N + T W + + + I M A F +
Sbjct: 401 KVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQ 460
Query: 107 RAMDQARELV-----NMLEKIAGPIGMRMS-PPAWVELKD--DRIETYVRTIQSTLGAEG 158
R Q RE + + L KI+ GM + P + + D +E R +++T
Sbjct: 461 R---QCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSG-- 515
Query: 159 KIQMVVCIIMGPRDDLYGAIKKLCCVQSPVPSQVVNVRTIGQPTRLRSVAQKILLQINCK 218
+Q+++ I+ G + +Y +K++ + +Q V V+ + + + + L+IN K
Sbjct: 516 -LQLIIVILPG-KTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSP--QTLSNLCLKINVK 571
Query: 219 LGGELWGVDIPLKQ-------LMVIGMDVYHDPSRGMR--SVVGFVASINLTLTKWYSRV 269
LGG + + +P ++ ++ +G DV H P+ + S+ V S++ +++ + V
Sbjct: 572 LGG-INNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATV 630
Query: 270 VFQMPHQEIVDSLKLCLVGSLKKFYEAAQ 298
Q P QEI+ L + L +FY++ +
Sbjct: 631 RVQRPRQEIIQDLASMVRELLIQFYKSTR 659
>gi|156071465 Rho GTPase activating protein 4 [Homo sapiens]
Length = 946
Score = 33.5 bits (75), Expect = 0.29
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 88 RDPSILTIPMHFWALFYPKRAMDQARELVNMLEKIAGPIGMRMS 131
++PS+L+ P+H WA+ + Q+RE + E +AGP+ R+S
Sbjct: 92 KEPSLLS-PLHCWAVLL-QHTRQQSRESAALSEVLAGPLAQRLS 133
>gi|15055539 ribosomal protein S2 [Homo sapiens]
Length = 293
Score = 29.3 bits (64), Expect = 5.5
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 228 IPLKQLMVIGMDVYHDPSRGMRSVVGFVASIN----------LTLTKWYSRVVFQMPHQE 277
+P K LM+ G+D + +RG + +G A LT W V + P+QE
Sbjct: 209 VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQE 268
Query: 278 IVDSL 282
D L
Sbjct: 269 FTDHL 273
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 28.5 bits (62), Expect = 9.4
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 4 DFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGRV 61
+ AM D ++ +Q + L KNE+A +L R L+ +H++EG V
Sbjct: 1751 NMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLHEMEGAV 1808
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 28.5 bits (62), Expect = 9.4
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 4 DFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGRV 61
+ AM D ++ +Q + L KNE+A +L R L+ +H++EG V
Sbjct: 1758 NMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLHEMEGAV 1815
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 28.5 bits (62), Expect = 9.4
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 4 DFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGRV 61
+ AM D ++ +Q + L KNE+A +L R L+ +H++EG V
Sbjct: 1758 NMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLHEMEGAV 1815
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 28.5 bits (62), Expect = 9.4
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 4 DFRAMKDLAQQINLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHKIEGRV 61
+ AM D ++ +Q + L KNE+A +L R L+ +H++EG V
Sbjct: 1751 NMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLHEMEGAV 1808
>gi|46409282 OTU domain containing 6A [Homo sapiens]
Length = 288
Score = 28.5 bits (62), Expect = 9.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 1 MKKDFRAMKDLAQQI----NLSPKQHHSALECLLQRIAKNEAATNELMRWGLRLQKDVHK 56
+++ R ++L QI N PK + + LLQ +A+ EA + R L +D
Sbjct: 12 LRRHQRERQELQAQIRSLKNSVPKTDKTKRKQLLQDVARMEAEMAQKHRQELEKFQDDSS 71
Query: 57 IEGRVLPMERINLKN 71
IE V + ++NL+N
Sbjct: 72 IESVVEDLAKMNLEN 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,146,131
Number of Sequences: 37866
Number of extensions: 471604
Number of successful extensions: 979
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 21
length of query: 349
length of database: 18,247,518
effective HSP length: 103
effective length of query: 246
effective length of database: 14,347,320
effective search space: 3529440720
effective search space used: 3529440720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.