Guide to the Human Genome
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Name: LOC653155 Sequence: fasta or formatted (111aa) NCBI GI: 169216400
Description:

PREDICTED: similar to hCG1820375

Not currently referenced in the text

Other entries for this name:
alt mRNA {111aa} PREDICTED: hypothetical protein LOC653155
alt mRNA {111aa} PREDICTED: similar to hCG1820375
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          5           1
 C cysteine            0.9          1           1
 D aspartate           9.0         10           1
 E glutamate           4.5          5           1
 F phenylalanine       3.6          4           1
 G glycine             2.7          3           1
 H histidine           2.7          3           1
 I isoleucine          9.9         11           1
 K lysine             12.6         14           2
 L leucine            12.6         14           2
 M methionine          4.5          5           1
 N asparagine          4.5          5           1
 P proline             3.6          4           1
 Q glutamine           8.1          9           1
 R arginine            5.4          6           1
 S serine              1.8          2           1
 T threonine           3.6          4           1
 V valine              4.5          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1820375 
LOC653155             1.000   PREDICTED: similar to hCG1820375 
LOC653155             1.000   PREDICTED: hypothetical protein LOC653155 
PRPF4B                0.980   serine/threonine-protein kinase PRP4K 
MAPK10                0.097   mitogen-activated protein kinase 10 isoform 1 
MAPK10                0.097   mitogen-activated protein kinase 10 isoform 2 
MAPK10                0.097   mitogen-activated protein kinase 10 isoform 4 
MAPK10                0.097   mitogen-activated protein kinase 10 isoform 3 
MAPK8                 0.082   mitogen-activated protein kinase 8 isoform JNK1 alph...
MAPK8                 0.082   mitogen-activated protein kinase 8 isoform JNK1 beta...
MAPK8                 0.082   mitogen-activated protein kinase 8 isoform JNK1 beta...
MAPK8                 0.082   mitogen-activated protein kinase 8 isoform JNK1 alpha...
MAPK9                 0.077   mitogen-activated protein kinase 9 isoform JNK2 beta...
MAPK9                 0.077   mitogen-activated protein kinase 9 isoform JNK2 beta...
MAPK9                 0.077   mitogen-activated protein kinase 9 isoform JNK2 alph...
MAPK9                 0.077   mitogen-activated protein kinase 9 isoform JNK2 alph...
CLK2                  0.066   CDC-like kinase 2 
CASK                  0.066   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.066   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.066   calcium/calmodulin-dependent serine protein kinase ...
CAMK2G                0.051   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.051   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.051   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.051   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.051   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2D                0.046   calcium/calmodulin-dependent protein kinase II delt...
CAMK2D                0.046   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.046   calcium/calmodulin-dependent protein kinase II delt...
CAMK2D                0.046   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.046   calcium/calmodulin-dependent protein kinase II delta...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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