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Search of human proteins with 112181294
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|112181294 ELMO/CED-12 domain containing 1 isoform 1 [Homo
sapiens]
(334 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|112181294 ELMO/CED-12 domain containing 1 isoform 1 [Homo sap... 686 0.0
gi|194097484 ELMO/CED-12 domain containing 1 isoform 2 [Homo sap... 664 0.0
gi|24308456 ELMO/CED-12 domain containing 2 [Homo sapiens] 303 1e-82
gi|203098650 ELMO/CED-12 domain containing 3 isoform b [Homo sap... 51 2e-06
gi|203098539 ELMO/CED-12 domain containing 3 isoform b [Homo sap... 51 2e-06
gi|203098474 ELMO/CED-12 domain containing 3 isoform b [Homo sap... 51 2e-06
gi|21362032 ELMO/CED-12 domain containing 3 isoform a [Homo sapi... 47 2e-05
gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo s... 30 2.3
gi|5031579 A-kinase anchor protein 8 [Homo sapiens] 30 3.9
gi|113722125 inositol polyphosphate-5-phosphatase, 75kDa precurs... 29 5.2
gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Ho... 28 8.8
gi|221316624 dystonin isoform 4 [Homo sapiens] 28 8.8
gi|221316622 dystonin isoform 3 [Homo sapiens] 28 8.8
gi|221316618 dystonin isoform 2 [Homo sapiens] 28 8.8
gi|34577047 dystonin isoform 1 [Homo sapiens] 28 8.8
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 28 8.8
gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens] 28 8.8
gi|62868213 golgi associated PDZ and coiled-coil motif containin... 28 8.8
>gi|112181294 ELMO/CED-12 domain containing 1 isoform 1 [Homo
sapiens]
Length = 334
Score = 686 bits (1770), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD 60
MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
Sbjct: 1 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD 60
Query: 61 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE 120
SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
Sbjct: 61 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE 120
Query: 121 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG 180
KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
Sbjct: 121 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG 180
Query: 181 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG 240
LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG
Sbjct: 181 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG 240
Query: 241 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN 300
INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
Sbjct: 241 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN 300
Query: 301 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM 334
RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
Sbjct: 301 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM 334
>gi|194097484 ELMO/CED-12 domain containing 1 isoform 2 [Homo
sapiens]
Length = 326
Score = 664 bits (1712), Expect = 0.0
Identities = 326/334 (97%), Positives = 326/334 (97%), Gaps = 8/334 (2%)
Query: 1 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD 60
MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD
Sbjct: 1 MKHFLRMLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRD 60
Query: 61 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE 120
SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE
Sbjct: 61 SKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVE 120
Query: 121 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG 180
KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG
Sbjct: 121 KLRREAYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLG 180
Query: 181 LYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVG 240
LYNLQYFAERDATAAQQVLSDSLHPKC SKFSKAEWEKKRMDKAIGYSFAIVG
Sbjct: 181 LYNLQYFAERDATAAQQVLSDSLHPKC--------SKFSKAEWEKKRMDKAIGYSFAIVG 232
Query: 241 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN 300
INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN 292
Query: 301 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM 334
RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
Sbjct: 293 RVREKFRKRIIKQLQNPDMALCPHFAASEGLINM 326
>gi|24308456 ELMO/CED-12 domain containing 2 [Homo sapiens]
Length = 293
Score = 303 bits (777), Expect = 1e-82
Identities = 156/315 (49%), Positives = 207/315 (65%), Gaps = 26/315 (8%)
Query: 7 MLIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLL 66
M I + +FY F +K+++R++TG+CELQRI ++T GA RT +IE SL SK+K+L
Sbjct: 1 MFISLWEFFYGHFFRFWMKWLLRQMTGKCELQRI-FDTYVGAQRTHRIENSLTYSKNKVL 59
Query: 67 QTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREA 126
Q + V ++K ++DIM+ K INP+ + I ++ CLLQI GY+ L DVE +R+
Sbjct: 60 QKATHVVQSEVDKYVDDIMKEKNINPEKDASFKICMKMCLLQITGYKQLYLDVESVRKRP 119
Query: 127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQY 186
YDSDN QHEE+L+KLW L P L +RISKQW EIGFQGDDPKTDFRGMG+LGL NL Y
Sbjct: 120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVY 179
Query: 187 FAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDL 246
F+E + A Q+LS S HPK +GYS+AIVGIN+T++
Sbjct: 180 FSENYTSEAHQILSRSNHPK-------------------------LGYSYAIVGINLTEM 214
Query: 247 AYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKF 306
AY+LL S ALK H YN+ P PT+ HF Q +CYL++EF KFW EE+P IM FN REKF
Sbjct: 215 AYSLLKSEALKFHLYNLVPGIPTMEHFHQFYCYLVYEFDKFWFEEEPESIMYFNLYREKF 274
Query: 307 RKRIIKQLQNPDMAL 321
++I L + ++AL
Sbjct: 275 HEKIKGLLLDCNVAL 289
>gi|203098650 ELMO/CED-12 domain containing 3 isoform b [Homo
sapiens]
Length = 381
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 26/191 (13%)
Query: 128 DSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYF 187
DS +P H +L ++K L + + W ++GFQG +P TD RG G L L +L Y
Sbjct: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 188 AERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLA 247
T +EI + S+ ++ + F ++ +NIT +A
Sbjct: 225 VMDSKTLPM---------------AQEIFRLSRHHIQQ--------FPFCLMSVNITHIA 261
Query: 248 YNLLVSGALKTHFYNIAPEAPTL-SHFQQTFCYLMHEF--HKFWIEEDPMDIMEFNRVRE 304
L L P + S + TF +L H + + I + + E + +
Sbjct: 262 IQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKELEVLAK 321
Query: 305 KFRKRIIKQLQ 315
K +R++K L+
Sbjct: 322 KSPRRLLKTLE 332
>gi|203098539 ELMO/CED-12 domain containing 3 isoform b [Homo
sapiens]
Length = 381
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 26/191 (13%)
Query: 128 DSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYF 187
DS +P H +L ++K L + + W ++GFQG +P TD RG G L L +L Y
Sbjct: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 188 AERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLA 247
T +EI + S+ ++ + F ++ +NIT +A
Sbjct: 225 VMDSKTLPM---------------AQEIFRLSRHHIQQ--------FPFCLMSVNITHIA 261
Query: 248 YNLLVSGALKTHFYNIAPEAPTL-SHFQQTFCYLMHEF--HKFWIEEDPMDIMEFNRVRE 304
L L P + S + TF +L H + + I + + E + +
Sbjct: 262 IQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKELEVLAK 321
Query: 305 KFRKRIIKQLQ 315
K +R++K L+
Sbjct: 322 KSPRRLLKTLE 332
>gi|203098474 ELMO/CED-12 domain containing 3 isoform b [Homo
sapiens]
Length = 381
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 26/191 (13%)
Query: 128 DSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYF 187
DS +P H +L ++K L + + W ++GFQG +P TD RG G L L +L Y
Sbjct: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 188 AERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLA 247
T +EI + S+ ++ + F ++ +NIT +A
Sbjct: 225 VMDSKTLPM---------------AQEIFRLSRHHIQQ--------FPFCLMSVNITHIA 261
Query: 248 YNLLVSGALKTHFYNIAPEAPTL-SHFQQTFCYLMHEF--HKFWIEEDPMDIMEFNRVRE 304
L L P + S + TF +L H + + I + + E + +
Sbjct: 262 IQALREECLSRECNRQQKVIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKELEVLAK 321
Query: 305 KFRKRIIKQLQ 315
K +R++K L+
Sbjct: 322 KSPRRLLKTLE 332
>gi|21362032 ELMO/CED-12 domain containing 3 isoform a [Homo
sapiens]
Length = 391
Score = 47.0 bits (110), Expect = 2e-05
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 24/156 (15%)
Query: 128 DSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYF 187
DS +P H +L ++K L + + W ++GFQG +P TD RG G L L +L Y
Sbjct: 165 DSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYL 224
Query: 188 AERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLA 247
T +EI + S+ ++ + F ++ +NIT +A
Sbjct: 225 VMDSKTLPM---------------AQEIFRLSRHHIQQ--------FPFCLMSVNITHIA 261
Query: 248 YNLLVSGALKTHFYNIAPEAPTL-SHFQQTFCYLMH 282
L L P + S + TF +L H
Sbjct: 262 IQALREECLSRECNRQQKVIPVVNSFYAATFLHLAH 297
>gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo
sapiens]
Length = 2701
Score = 30.4 bits (67), Expect = 2.3
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 170 KTDFRGMGLLGLYNLQYFAERD------ATAAQQVLSDSLHPKCRDITKEEISKFS-KAE 222
+ D+R +L +Y ++ + D + + +L ++ P +I + + F+ + E
Sbjct: 984 RLDYRISYMLSIYKKEFGEDNDNAETSASGSPDTLLPSAIVPDIDEIAAQAETMFAGRKE 1043
Query: 223 WEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQ 275
++D G +F V I++ Y L+SGAL+ F + + A L F+Q
Sbjct: 1044 KNPVQLDDEGGRTFLRVLIHLIMHDYPPLLSGALQLLFKHFSQRAEVLQAFKQ 1096
>gi|5031579 A-kinase anchor protein 8 [Homo sapiens]
Length = 692
Score = 29.6 bits (65), Expect = 3.9
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 54 IETSLRDSKSKLLQTSVSVHPDAIEKTIEDIMELKKINPDVNPQLGISLQACLLQIVGYR 113
I T L D + LQ + IEK +++ME + P +P GI + +I
Sbjct: 421 ISTKLPDKTVEFLQEYIVNRNKKIEKRRQELMEKETAKPKPDPFKGIGQEHFFKKIEAAH 480
Query: 114 NLIADV------EKLRREAYDSDNPQHEEMLLKLWKFLK---PNTPLESRISKQWCEIGF 164
L D+ + L+R + D+ + + + +K + L +R + E
Sbjct: 481 CLACDMLIPAQPQLLQRHLHSVDHNHNRRLAAEQFKKTSLHVAKSVLNNRHIVKMLEKYL 540
Query: 165 QGDDPKT 171
+G+DP T
Sbjct: 541 KGEDPFT 547
>gi|113722125 inositol polyphosphate-5-phosphatase, 75kDa precursor
[Homo sapiens]
Length = 913
Score = 29.3 bits (64), Expect = 5.2
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 152 ESRISKQWCEIGFQGDDPKTDFRGMGLLGL--YNLQ----------YFAERDATAAQQVL 199
E+ ++C I QG + D R LLGL Y L+ Y R A V
Sbjct: 9 ETLAEGEYCVIAVQGVLCEGDSRQSRLLGLVRYRLEHGGQEHALFLYTHRRMAITGDDVS 68
Query: 200 SDSLHPKCRDITKEEIS 216
D + P RD T EE+S
Sbjct: 69 LDQIVPVSRDFTLEEVS 85
>gi|24307969 cytoplasmic FMR1 interacting protein 1 isoform a [Homo
sapiens]
Length = 1253
Score = 28.5 bits (62), Expect = 8.8
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 101 SLQACLLQIVGYRNLIADVEKLRREAYDSD---NPQHEEMLLKLWKF 144
SLQ L I GY L+AD+ L + Y++ P + MLLK+ F
Sbjct: 223 SLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGF 269
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 28.5 bits (62), Expect = 8.8
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 30 KLTGRCE-LQRICYNTKPGASRTMKIETSLRDSKSKLLQT-SVSVHPDAIEKTIEDIMEL 87
+L+ RC+ + + + S + L D +KL + +VS HPDA+ + +E ++
Sbjct: 2666 QLSDRCDWIDQAIVKSTQYQSLLRSLSDKLSDLDNKLSSSLAVSTHPDAMNQQLETAQKM 2725
Query: 88 KKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAY-DSDNPQHEEMLLKLWKFLK 146
K+ Q+ ++ C D+ L +E Y ++ + E +LK +K ++
Sbjct: 2726 KQEIQQEKKQIKVAQALC-----------EDLSALVKEEYLKAELSRQLEGILKSFKDVE 2774
Query: 147 PNTPLESRISKQWCEIGFQGDDPKTDFR 174
+ + C Q DF+
Sbjct: 2775 QKAENHVQHLQSACASSHQFQQMSRDFQ 2802
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 28.5 bits (62), Expect = 8.8
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 30 KLTGRCE-LQRICYNTKPGASRTMKIETSLRDSKSKLLQT-SVSVHPDAIEKTIEDIMEL 87
+L+ RC+ + + + S + L D +KL + +VS HPDA+ + +E ++
Sbjct: 2677 QLSDRCDWIDQAIVKSTQYQSLLRSLSDKLSDLDNKLSSSLAVSTHPDAMNQQLETAQKM 2736
Query: 88 KKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAY-DSDNPQHEEMLLKLWKFLK 146
K+ Q+ ++ C D+ L +E Y ++ + E +LK +K ++
Sbjct: 2737 KQEIQQEKKQIKVAQALC-----------EDLSALVKEEYLKAELSRQLEGILKSFKDVE 2785
Query: 147 PNTPLESRISKQWCEIGFQGDDPKTDFR 174
+ + C Q DF+
Sbjct: 2786 QKAENHVQHLQSACASSHQFQQMSRDFQ 2813
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 28.5 bits (62), Expect = 8.8
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 30 KLTGRCE-LQRICYNTKPGASRTMKIETSLRDSKSKLLQT-SVSVHPDAIEKTIEDIMEL 87
+L+ RC+ + + + S + L D +KL + +VS HPDA+ + +E ++
Sbjct: 2815 QLSDRCDWIDQAIVKSTQYQSLLRSLSDKLSDLDNKLSSSLAVSTHPDAMNQQLETAQKM 2874
Query: 88 KKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAY-DSDNPQHEEMLLKLWKFLK 146
K+ Q+ ++ C D+ L +E Y ++ + E +LK +K ++
Sbjct: 2875 KQEIQQEKKQIKVAQALC-----------EDLSALVKEEYLKAELSRQLEGILKSFKDVE 2923
Query: 147 PNTPLESRISKQWCEIGFQGDDPKTDFR 174
+ + C Q DF+
Sbjct: 2924 QKAENHVQHLQSACASSHQFQQMSRDFQ 2951
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 28.5 bits (62), Expect = 8.8
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 30 KLTGRCE-LQRICYNTKPGASRTMKIETSLRDSKSKLLQT-SVSVHPDAIEKTIEDIMEL 87
+L+ RC+ + + + S + L D +KL + +VS HPDA+ + +E ++
Sbjct: 2637 QLSDRCDWIDQAIVKSTQYQSLLRSLSDKLSDLDNKLSSSLAVSTHPDAMNQQLETAQKM 2696
Query: 88 KKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAY-DSDNPQHEEMLLKLWKFLK 146
K+ Q+ ++ C D+ L +E Y ++ + E +LK +K ++
Sbjct: 2697 KQEIQQEKKQIKVAQALC-----------EDLSALVKEEYLKAELSRQLEGILKSFKDVE 2745
Query: 147 PNTPLESRISKQWCEIGFQGDDPKTDFR 174
+ + C Q DF+
Sbjct: 2746 QKAENHVQHLQSACASSHQFQQMSRDFQ 2773
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 28.5 bits (62), Expect = 8.8
Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 30 KLTGRCE-LQRICYNTKPGASRTMKIETSLRDSKSKLLQT-SVSVHPDAIEKTIEDIMEL 87
+L+ RC+ + + + S + L D +KL + +VS HPDA+ + +E ++
Sbjct: 2311 QLSDRCDWIDQAIVKSTQYQSLLRSLSDKLSDLDNKLSSSLAVSTHPDAMNQQLETAQKM 2370
Query: 88 KKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRREAY-DSDNPQHEEMLLKLWKFLK 146
K+ Q+ ++ C D+ L +E Y ++ + E +LK +K ++
Sbjct: 2371 KQEIQQEKKQIKVAQALC-----------EDLSALVKEEYLKAELSRQLEGILKSFKDVE 2419
Query: 147 PNTPLESRISKQWCEIGFQGDDPKTDFR 174
+ + C Q DF+
Sbjct: 2420 QKAENHVQHLQSACASSHQFQQMSRDFQ 2447
>gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens]
Length = 4265
Score = 28.5 bits (62), Expect = 8.8
Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 8 LIQVCLYFYCKFLWRCLKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSKLLQ 67
LIQVC+Y + +C++++ EL R Y T + I + L K L+
Sbjct: 2774 LIQVCVYIHQSVSKKCIEYL-------AELTRHNYVTPKSYLELLHIFSILIGQKKLELK 2826
Query: 68 TSVSVHPDAIEK---TIEDIMELKKINPDVNPQLGISLQACLLQIVGYRNLIADVEKLRR 124
T+ + ++K T ED+ ++++ ++P L + + +L + + A E+ R
Sbjct: 2827 TAKNRMKSGLDKLLRTSEDVAKMQEDLESMHPLLEEAAKDTMLTMEQIKVDTAIAEETRN 2886
Query: 125 EAYDSDNPQHEE 136
+ +E+
Sbjct: 2887 SVQTEEIKANEK 2898
>gi|62868213 golgi associated PDZ and coiled-coil motif containing
isoform b [Homo sapiens]
Length = 454
Score = 28.5 bits (62), Expect = 8.8
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 39 RICYNTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIED-IMELKKINPDVNPQ 97
++C+ + + K+E L D KS+L +T +EK + D +++L I ++ +
Sbjct: 79 QLCHKAQSVSQINHKLEAQLVDLKSELTET--QAEKVVLEKEVHDQLLQLHSIQLQLHAK 136
Query: 98 LGISLQACLLQIVGYRNLIADVEKLRREA 126
G S + ++ R L A+ ++ +EA
Sbjct: 137 TGQSADSGTIKAKLERELEANKKEKMKEA 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,331,397
Number of Sequences: 37866
Number of extensions: 503320
Number of successful extensions: 1593
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1578
Number of HSP's gapped (non-prelim): 24
length of query: 334
length of database: 18,247,518
effective HSP length: 103
effective length of query: 231
effective length of database: 14,347,320
effective search space: 3314230920
effective search space used: 3314230920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.