Guide to the Human Genome
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Name: LOC644193 Sequence: fasta or formatted (205aa) NCBI GI: 169211591
Description:

PREDICTED: similar to hCG1744883

Not currently referenced in the text

Other entries for this name:
alt mRNA {205aa} PREDICTED: similar to hCG1744883
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          7           1
 C cysteine            2.9          6           1
 D aspartate           4.9         10           1
 E glutamate           5.9         12           1
 F phenylalanine       0.0          0           0
 G glycine             6.8         14           1
 H histidine           0.5          1           1
 I isoleucine          0.5          1           1
 K lysine              0.5          1           1
 L leucine             5.9         12           2
 M methionine          0.5          1           1
 N asparagine          4.4          9           1
 P proline            11.2         23           2
 Q glutamine           3.9          8           1
 R arginine            4.4          9           1
 S serine             19.0         39           1
 T threonine          15.1         31           2
 V valine              9.8         20           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1744883 
LOC644193             1.000   PREDICTED: similar to hCG1744883 
MUC5B                 0.088   mucin 5, subtype B, tracheobronchial 
LOC729792             0.086   PREDICTED: hypothetical protein 
LOC729792             0.086   PREDICTED: hypothetical protein 
LOC729792             0.086   PREDICTED: hypothetical protein 
LOC100294501          0.086   PREDICTED: hypothetical protein 
LOC100294249          0.086   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.086   PREDICTED: hypothetical protein 
LOC100294204          0.086   PREDICTED: hypothetical protein 
LOC100294136          0.086   PREDICTED: hypothetical protein 
LOC100294091          0.086   PREDICTED: hypothetical protein 
LOC730401             0.086   PREDICTED: hypothetical protein 
MUC2                  0.078   mucin 2 precursor 
MUC12                 0.073   PREDICTED: mucin 12 
MUC12                 0.073   PREDICTED: mucin 12, cell surface associated 
LOC100294420          0.065   PREDICTED: similar to mucin 2 
MAGEE1                0.062   melanoma antigen family E, 1 
LOC100133790          0.057   PREDICTED: intestinal mucin-like, partial 
MUC17                 0.057   mucin 17 
MUC5AC                0.055   mucin 5AC 
MUC12                 0.055   PREDICTED: mucin 12 
MUC3A                 0.052   PREDICTED: mucin 3A, cell surface associated, parti...
MUC3A                 0.052   PREDICTED: mucin 3A, intestinal 
LOC100293485          0.052   PREDICTED: hypothetical protein 
LOC100131251          0.052   PREDICTED: hypothetical protein 
MUC12                 0.052   PREDICTED: mucin 12 
LOC100131251          0.052   PREDICTED: hypothetical protein 
MUC4                  0.049   mucin 4 isoform a 
MUC3B                 0.049   PREDICTED: mucin 3B, cell surface associated, parti...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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