Guide to the Human Genome
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Search of human proteins with 169210888

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169210888 PREDICTED: similar to FBXW10 protein [Homo
sapiens]
         (243 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169210888 PREDICTED: similar to FBXW10 protein [Homo sapiens]      481   e-136
gi|110815834 F-box and WD-40 domain protein 10 [Homo sapiens]         474   e-134
gi|238776840 patatin-like phospholipase domain containing 1 isof...    32   0.38 
gi|224589138 patatin-like phospholipase domain containing 1 isof...    32   0.38 
gi|224593249 patatin-like phospholipase domain containing 1 isof...    32   0.38 
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ...    32   0.65 
gi|40795665 ubiquitin specific protease 4 isoform a [Homo sapiens]     31   0.85 
gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens]     31   0.85 
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo...    31   1.1  
gi|221139926 NHS-like 1 [Homo sapiens]                                 30   1.5  
gi|156766050 AHNAK nucleoprotein 2 [Homo sapiens]                      30   1.5  
gi|61743954 AHNAK nucleoprotein isoform 1 [Homo sapiens]               30   2.5  
gi|71274186 hypothetical protein LOC85449 [Homo sapiens]               28   5.5  
gi|223890230 zinc finger protein, multitype 2 [Homo sapiens]           28   7.2  
gi|38679909 testis expressed sequence 2 [Homo sapiens]                 28   7.2  
gi|109826351 melanophilin isoform 2 [Homo sapiens]                     28   7.2  
gi|13129108 melanophilin isoform 1 [Homo sapiens]                      28   7.2  
gi|7662284 microtubule associated monoxygenase, calponin and LIM...    28   7.2  
gi|29788755 SET binding factor 2 [Homo sapiens]                        28   9.4  

>gi|169210888 PREDICTED: similar to FBXW10 protein [Homo sapiens]
          Length = 243

 Score =  481 bits (1239), Expect = e-136
 Identities = 243/243 (100%), Positives = 243/243 (100%)

Query: 1   MSPDQFLLTVSALQHARNSGEFAYPCRPQTEITDVWGPSISYPRKVLNFKGKSIQRAVDR 60
           MSPDQFLLTVSALQHARNSGEFAYPCRPQTEITDVWGPSISYPRKVLNFKGKSIQRAVDR
Sbjct: 1   MSPDQFLLTVSALQHARNSGEFAYPCRPQTEITDVWGPSISYPRKVLNFKGKSIQRAVDR 60

Query: 61  LRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQSTIPEPMIIRSRFSGSLKGGDQVT 120
           LRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQSTIPEPMIIRSRFSGSLKGGDQVT
Sbjct: 61  LRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQSTIPEPMIIRSRFSGSLKGGDQVT 120

Query: 121 SSIERAVCSTGPLTSMQVIKPNRMLAPQVGTATLSLKKERPRIYTALDPFRVNAEFVLLT 180
           SSIERAVCSTGPLTSMQVIKPNRMLAPQVGTATLSLKKERPRIYTALDPFRVNAEFVLLT
Sbjct: 121 SSIERAVCSTGPLTSMQVIKPNRMLAPQVGTATLSLKKERPRIYTALDPFRVNAEFVLLT 180

Query: 181 VKEEKEHQEAKMKEYQARESTGVVDPGKASKAAWIRKIKGLPIDNFTKQGKTAAPELGQN 240
           VKEEKEHQEAKMKEYQARESTGVVDPGKASKAAWIRKIKGLPIDNFTKQGKTAAPELGQN
Sbjct: 181 VKEEKEHQEAKMKEYQARESTGVVDPGKASKAAWIRKIKGLPIDNFTKQGKTAAPELGQN 240

Query: 241 VFI 243
           VFI
Sbjct: 241 VFI 243


>gi|110815834 F-box and WD-40 domain protein 10 [Homo sapiens]
          Length = 1051

 Score =  474 bits (1219), Expect = e-134
 Identities = 238/243 (97%), Positives = 239/243 (98%)

Query: 1    MSPDQFLLTVSALQHARNSGEFAYPCRPQTEITDVWGPSISYPRKVLNFKGKSIQRAVDR 60
            MSPDQFLLTVSALQHA NSGEFAYPCRPQTEITDVWGPSISYPRKVLNFKGKSIQRAVDR
Sbjct: 809  MSPDQFLLTVSALQHAHNSGEFAYPCRPQTEITDVWGPSISYPRKVLNFKGKSIQRAVDR 868

Query: 61   LRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQSTIPEPMIIRSRFSGSLKGGDQVT 120
            LRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPR QSTIP+PMIIRSRFSGSLKGGDQVT
Sbjct: 869  LRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRVQSTIPQPMIIRSRFSGSLKGGDQVT 928

Query: 121  SSIERAVCSTGPLTSMQVIKPNRMLAPQVGTATLSLKKERPRIYTALDPFRVNAEFVLLT 180
            SSIERAVCSTGPLTSMQVIKPNRMLAPQVGTATLSLKKERPRIYTALDPFRVN EFVLLT
Sbjct: 929  SSIERAVCSTGPLTSMQVIKPNRMLAPQVGTATLSLKKERPRIYTALDPFRVNTEFVLLT 988

Query: 181  VKEEKEHQEAKMKEYQARESTGVVDPGKASKAAWIRKIKGLPIDNFTKQGKTAAPELGQN 240
            VKEEKEHQEAKMKEYQARESTGVVDPGK SKAAWIRKIKGLPIDNFTKQGKTAAPELGQN
Sbjct: 989  VKEEKEHQEAKMKEYQARESTGVVDPGKVSKAAWIRKIKGLPIDNFTKQGKTAAPELGQN 1048

Query: 241  VFI 243
            VFI
Sbjct: 1049 VFI 1051


>gi|238776840 patatin-like phospholipase domain containing 1 isoform
           3 [Homo sapiens]
          Length = 532

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 19/207 (9%)

Query: 37  GPSISYPRKVLNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQ 96
           GP +S P + L F  +S   A     L  PP     +S PL +  + P    ++H P + 
Sbjct: 325 GPPVSQPVQTLEFTCESPVSAPVS-PLEQPPAQPLASSTPLSLSGMPPVSFPAVHKPPSS 383

Query: 97  ---STIPEPMIIRSRFSGSLKGGDQVTSSIERAVCSTGPLTSMQVIKPNRMLAPQ-VGTA 152
              S++P P    S  S   +   Q + S  R++ S  P +    + P+ + APQ +  +
Sbjct: 384 TPGSSLPTPPPGLSPLSPQQQ--VQPSGSPARSLHSQAPTSPRPSLGPSTVGAPQTLPRS 441

Query: 153 TLS----------LKKERPRIYTALDPFRVNAEFVLLTVKEEKEHQEAKMKEYQARESTG 202
           +LS          L +E+P+    L   +  +   L+ VKE     +  + E  A +S  
Sbjct: 442 SLSAFPAQPPVEELGQEQPQAVALLVSSKPKSAVPLVHVKETV--SKPYVTESPAEDSNW 499

Query: 203 VVDPGKASKAAWIRKIKGLPIDNFTKQ 229
           V    K +K       KG P  + +K+
Sbjct: 500 VNKVFKKNKQKTSGTRKGFPRHSGSKK 526


>gi|224589138 patatin-like phospholipase domain containing 1 isoform
           2 [Homo sapiens]
          Length = 446

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 19/207 (9%)

Query: 37  GPSISYPRKVLNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQ 96
           GP +S P + L F  +S   A     L  PP     +S PL +  + P    ++H P + 
Sbjct: 239 GPPVSQPVQTLEFTCESPVSAPVS-PLEQPPAQPLASSTPLSLSGMPPVSFPAVHKPPSS 297

Query: 97  ---STIPEPMIIRSRFSGSLKGGDQVTSSIERAVCSTGPLTSMQVIKPNRMLAPQ-VGTA 152
              S++P P    S  S   +   Q + S  R++ S  P +    + P+ + APQ +  +
Sbjct: 298 TPGSSLPTPPPGLSPLSPQQQ--VQPSGSPARSLHSQAPTSPRPSLGPSTVGAPQTLPRS 355

Query: 153 TLS----------LKKERPRIYTALDPFRVNAEFVLLTVKEEKEHQEAKMKEYQARESTG 202
           +LS          L +E+P+    L   +  +   L+ VKE     +  + E  A +S  
Sbjct: 356 SLSAFPAQPPVEELGQEQPQAVALLVSSKPKSAVPLVHVKETV--SKPYVTESPAEDSNW 413

Query: 203 VVDPGKASKAAWIRKIKGLPIDNFTKQ 229
           V    K +K       KG P  + +K+
Sbjct: 414 VNKVFKKNKQKTSGTRKGFPRHSGSKK 440


>gi|224593249 patatin-like phospholipase domain containing 1 isoform
           1 [Homo sapiens]
          Length = 437

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 19/207 (9%)

Query: 37  GPSISYPRKVLNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQ 96
           GP +S P + L F  +S   A     L  PP     +S PL +  + P    ++H P + 
Sbjct: 230 GPPVSQPVQTLEFTCESPVSAPVS-PLEQPPAQPLASSTPLSLSGMPPVSFPAVHKPPSS 288

Query: 97  ---STIPEPMIIRSRFSGSLKGGDQVTSSIERAVCSTGPLTSMQVIKPNRMLAPQ-VGTA 152
              S++P P    S  S   +   Q + S  R++ S  P +    + P+ + APQ +  +
Sbjct: 289 TPGSSLPTPPPGLSPLSPQQQ--VQPSGSPARSLHSQAPTSPRPSLGPSTVGAPQTLPRS 346

Query: 153 TLS----------LKKERPRIYTALDPFRVNAEFVLLTVKEEKEHQEAKMKEYQARESTG 202
           +LS          L +E+P+    L   +  +   L+ VKE     +  + E  A +S  
Sbjct: 347 SLSAFPAQPPVEELGQEQPQAVALLVSSKPKSAVPLVHVKETV--SKPYVTESPAEDSNW 404

Query: 203 VVDPGKASKAAWIRKIKGLPIDNFTKQ 229
           V    K +K       KG P  + +K+
Sbjct: 405 VNKVFKKNKQKTSGTRKGFPRHSGSKK 431


>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
           sapiens]
          Length = 1939

 Score = 31.6 bits (70), Expect = 0.65
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 182 KEEKEHQEAKMKEYQARESTGVVDPGKASKAAWIRKIKGLPIDNFTKQGKT 232
           K EKE  EA+ K + A+ S  VVDP ++   A ++  +G  +   T+ G T
Sbjct: 19  KSEKERIEAQNKPFDAKTSVFVVDPKESYVKAIVQSREGGKVTAKTEAGAT 69


>gi|40795665 ubiquitin specific protease 4 isoform a [Homo sapiens]
          Length = 963

 Score = 31.2 bits (69), Expect = 0.85
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 182 KEEKEHQEAKMKEYQARESTGVVDPGKASKAAWIRKIKGLP 222
           +EE EHQE   ++    E +G  +PG        +KIKG P
Sbjct: 661 EEEMEHQEEGKEQLSETEGSGEDEPGNDPSETTQKKIKGQP 701


>gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens]
          Length = 916

 Score = 31.2 bits (69), Expect = 0.85
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 182 KEEKEHQEAKMKEYQARESTGVVDPGKASKAAWIRKIKGLP 222
           +EE EHQE   ++    E +G  +PG        +KIKG P
Sbjct: 614 EEEMEHQEEGKEQLSETEGSGEDEPGNDPSETTQKKIKGQP 654


>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
           sapiens]
          Length = 1939

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 182 KEEKEHQEAKMKEYQARESTGVVDPGKASKAAWIRKIKGLPIDNFTKQGKT 232
           K E+E  EA+ K + A+ S  VVDP ++   A ++  +G  +   T+ G T
Sbjct: 19  KSERERIEAQNKPFDAKTSVFVVDPKESFVKATVQSREGGKVTAKTEAGAT 69


>gi|221139926 NHS-like 1 [Homo sapiens]
          Length = 1606

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 24/114 (21%)

Query: 48  NFKGKSIQRAVDRLRLSNPPIDVKRTS----IPLE-------------IQKLQPNLKISL 90
           N++ KS+ R +   +   PP+   RT     IP +             I  LQ +L++SL
Sbjct: 653 NYQDKSLSRNISLKKAKKPPLPPSRTDSLRRIPKKSSQCNGQVLNESLIATLQHSLQLSL 712

Query: 91  -----HSPRAQ--STIPEPMIIRSRFSGSLKGGDQVTSSIERAVCSTGPLTSMQ 137
                 SP     S + EP + RSR   ++  G  +TS+    V S    T  Q
Sbjct: 713 PGKSGSSPSQSPCSDLEEPWLPRSRSQSTVSAGSSMTSATTPNVYSLCGATPSQ 766


>gi|156766050 AHNAK nucleoprotein 2 [Homo sapiens]
          Length = 5795

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 14/123 (11%)

Query: 38   PSISYPRKVLNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQS 97
            PS   P+  ++ KG  I   V +L L  P ++V             PNL +SL S     
Sbjct: 4387 PSFKVPK--VDLKGPQIDVNVPKLDLKGPKVEVT-----------SPNLDVSLPSMEVDI 4433

Query: 98   TIPEPMIIRSRFSGSLKGGDQ-VTSSIERAVCSTGPLTSMQVIKPNRMLAPQVGTATLSL 156
              P   +  +R  G L   D+ VT+   +       + S  ++ P + +   V  +   +
Sbjct: 4434 QAPGAKLDSTRLEGDLSLADKDVTAKDSKFKMPKFKMPSFGMLSPGKSIEVSVDVSAPKM 4493

Query: 157  KKE 159
            + +
Sbjct: 4494 EAD 4496


>gi|61743954 AHNAK nucleoprotein isoform 1 [Homo sapiens]
          Length = 5890

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 13/80 (16%)

Query: 38   PSISYPRKVLNFKGKSIQRAVDRLRLSNPPI--DVKRTSIPL---EIQKLQPNLKISLHS 92
            P IS P   LN KG  ++  VD   +S P +  D+K  S+ +   E+    P L I   S
Sbjct: 3291 PKISMPEIDLNLKGSKLKGDVD---VSGPKLEGDIKAPSLDIKGPEVDVSGPKLNIEGKS 3347

Query: 93   PRAQSTIPEPMIIRSRFSGS 112
             +++  +P     +  FSGS
Sbjct: 3348 KKSRFKLP-----KFNFSGS 3362



 Score = 28.5 bits (62), Expect = 5.5
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 34   DVWGPSISYPRKVLNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNL-KISLHS 92
            ++  P IS P   LN KG  ++  VD + L+N   D+K  ++ ++  K+  +   I +H 
Sbjct: 3213 NIKAPKISMPDLDLNLKGPKMKGEVD-VSLANVEGDLKGPALDIKGPKIDVDAPDIDIHG 3271

Query: 93   PRAQSTIPE 101
            P A+   P+
Sbjct: 3272 PDAKLKGPK 3280



 Score = 28.1 bits (61), Expect = 7.2
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 34   DVWGPSISYPRKVLNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNL-KISLHS 92
            ++  P IS P   LN KG  ++  VD + L     D+K   + ++  K+  N   + +H 
Sbjct: 3537 NIKAPKISMPDIDLNLKGPKVKGDVD-ISLPKLEGDLKGPEVDIKGPKVDINAPDVDVHG 3595

Query: 93   PRAQSTIPEPMIIRSRFSGSLKGGDQVTSSIERA-VCSTGPLTSMQV 138
            P     +P+  + +    G    G +V  ++ +A +  +GP   + V
Sbjct: 3596 PDWHLKMPKVKMPKFSMPGFKGEGPEVDVTLPKADIDISGPNVDVDV 3642


>gi|71274186 hypothetical protein LOC85449 [Homo sapiens]
          Length = 1200

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 37  GPSISYPRKVLNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQ 96
           GP +  P  ++  +    Q +  RL  ++P      T I ++ ++    L   +  P   
Sbjct: 402 GP-LGNPENMVQLRPGPRQASSPRLSPASPAAAASETKIEVKTKERNGRLPKPMPCPSRN 460

Query: 97  STIPEPMIIRSRFSGSLKGGDQVTSSIERA-VCSTGP---LTSMQVIKPNR 143
           ++ PEP     +FS  L+G  Q + + E+A +   GP   L S+   KPNR
Sbjct: 461 TSSPEPPTPGLKFS-FLRGQRQPSVTPEKASLQHNGPWKVLCSLYSPKPNR 510


>gi|223890230 zinc finger protein, multitype 2 [Homo sapiens]
          Length = 1151

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 1   MSPDQFLLTVSALQHARNSGEFAYP-----CRPQTEITDVWGPSISYPRKVLNFKGKSIQ 55
           +SP+    +++ L  A +S +   P     C   + + D+ GP+     K  + + K + 
Sbjct: 595 LSPNTGQTSINLLNPAAHSADPENPLLQTSCINSSTVLDLIGPNGKGHDKDFSTQTKKLS 654

Query: 56  RAVDRL-RLSNPPIDVKRTSIPLEIQKLQPN 85
            + +   +++  P+DVK  S+PL   +  PN
Sbjct: 655 TSSNNDDKINGKPVDVKNPSVPLVDGESDPN 685


>gi|38679909 testis expressed sequence 2 [Homo sapiens]
          Length = 1134

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 93  PRAQ--STIPEPMIIRSRFSGSLKGGDQVTSSIERAVCSTGPLTSMQVIKPNRMLAPQVG 150
           P AQ  ST+P  +   S  SG L     V+S  E+   S+ PL+S      + +L+    
Sbjct: 122 PAAQVLSTVPLAVSPGSSSSGPLASSPSVSSLSEQKTSSSSPLSSP---SKSPILSSSAS 178

Query: 151 TATLSLKK 158
           T+TLS  K
Sbjct: 179 TSTLSSAK 186


>gi|109826351 melanophilin isoform 2 [Homo sapiens]
          Length = 572

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 47  LNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQSTIPEPMIIR 106
           L   G +++ +    R SN PI + R +  L  +   PN   S  +      +  P ++R
Sbjct: 465 LRAAGLTVKPSGKPRRKSNLPIFLPRVAGKLGKRPEDPNADPSSEA----KAMAVPYLLR 520

Query: 107 SRFSGSLKGGDQVTSSIERAVCSTGPLT 134
            +FS SLK   +   S +R     G LT
Sbjct: 521 RKFSNSLKSQGKDDDSFDRKSVYRGSLT 548


>gi|13129108 melanophilin isoform 1 [Homo sapiens]
          Length = 600

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 47  LNFKGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNLKISLHSPRAQSTIPEPMIIR 106
           L   G +++ +    R SN PI + R +  L  +   PN   S  +      +  P ++R
Sbjct: 493 LRAAGLTVKPSGKPRRKSNLPIFLPRVAGKLGKRPEDPNADPSSEA----KAMAVPYLLR 548

Query: 107 SRFSGSLKGGDQVTSSIERAVCSTGPLT 134
            +FS SLK   +   S +R     G LT
Sbjct: 549 RKFSNSLKSQGKDDDSFDRKSVYRGSLT 576


>gi|7662284 microtubule associated monoxygenase, calponin and LIM
            domain containing 2 [Homo sapiens]
          Length = 1124

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 61   LRLSNPPIDVKRTSIPL-EIQKLQPNLKISLHSPRAQSTIPEPMIIRSRFSGSLKGGD 117
            LR  +P + V + S  +    ++  NL ++ H P+AQ+T P+   +R  F  +L G D
Sbjct: 943  LRTVHPQLTVGKVSSGIGAAAEVLVNLYMNDHRPKAQATSPDLESMRKSFPLNLGGSD 1000


>gi|29788755 SET binding factor 2 [Homo sapiens]
          Length = 1849

 Score = 27.7 bits (60), Expect = 9.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 50   KGKSIQRAVDRLRLSNPPIDVKRTSIPLEIQKLQPNLKIS 89
            KG  I   +DR+     PI       PLEI+ L+PN+ +S
Sbjct: 1537 KGVCIWECIDRMH-KRSPIFFNYLYSPLEIEALKPNVNVS 1575


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,271,600
Number of Sequences: 37866
Number of extensions: 396509
Number of successful extensions: 1094
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 40
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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