Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC342293 Sequence: fasta or formatted (171aa) NCBI GI: 169210363
Description:

PREDICTED: similar to hCG18626

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt mRNA [171aa] PREDICTED: similar to hCG18626
alt mRNA [171aa] PREDICTED: similar to hCG18626
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         11           2
 C cysteine            2.9          5           1
 D aspartate           2.9          5           1
 E glutamate           6.4         11           2
 F phenylalanine       3.5          6           1
 G glycine             7.0         12           2
 H histidine           2.3          4           1
 I isoleucine          6.4         11           1
 K lysine              7.0         12           1
 L leucine             9.4         16           2
 M methionine          5.3          9           1
 N asparagine          3.5          6           1
 P proline             2.9          5           1
 Q glutamine           2.3          4           1
 R arginine            4.7          8           2
 S serine              8.8         15           2
 T threonine           7.0         12           2
 V valine              6.4         11           1
 W tryptophan          1.8          3           1
 Y tyrosine            2.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG18626 
LOC342293             1.000   PREDICTED: similar to hCG18626 
LOC342293             1.000   PREDICTED: similar to hCG18626 
ABCA3                 0.599   ATP-binding cassette, sub-family A member 3 
ABCA2                 0.435   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.435   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA4                 0.435   ATP-binding cassette, sub-family A member 4 
ABCA7                 0.404   ATP-binding cassette, sub-family A, member 7 
ABCA1                 0.394   ATP-binding cassette, sub-family A member 1 
ABCA13                0.382   ATP binding cassette, sub-family A (ABC1), member 13...
ABCA12                0.376   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA12                0.376   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA8                 0.307   ATP-binding cassette, sub-family A member 8 
ABCA9                 0.307   ATP-binding cassette, sub-family A, member 9 
ABCA10                0.295   ATP-binding cassette, sub-family A, member 10 [Homo...
ABCA5                 0.286   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.286   ATP-binding cassette, sub-family A , member 5 
ABCA6                 0.255   ATP-binding cassette, sub-family A, member 6 
ABCG5                 0.068   ATP-binding cassette sub-family G member 5 
ABCG1                 0.065   ATP-binding cassette sub-family G member 1 isoform 7...
ABCG1                 0.065   ATP-binding cassette sub-family G member 1 isoform 6...
ABCG1                 0.065   ATP-binding cassette sub-family G member 1 isoform 5...
ABCG1                 0.065   ATP-binding cassette sub-family G member 1 isoform 3...
ABCG1                 0.065   ATP-binding cassette sub-family G member 1 isoform 4...
ABCG1                 0.065   ATP-binding cassette sub-family G member 1 isoform 2...
ABCG2                 0.062   ATP-binding cassette, sub-family G, member 2 
ABCC11                0.059   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.059   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.059   ATP-binding cassette, sub-family C, member 11 isofor...
ABCG8                 0.053   ATP-binding cassette sub-family G member 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press