Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169203550
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169203550 PREDICTED: hypothetical protein [Homo sapiens]
(91 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169203550 PREDICTED: hypothetical protein [Homo sapiens] 196 4e-51
gi|169202954 PREDICTED: hypothetical protein [Homo sapiens] 155 5e-39
gi|4507041 solute carrier family 6 (neurotransmitter transporter... 33 0.050
gi|4507043 solute carrier family 6 member 4 [Homo sapiens] 33 0.065
gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens] 30 0.32
gi|193788732 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788730 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788728 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788724 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788720 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|120433602 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788548 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788544 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788542 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788540 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788538 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788536 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193794832 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788534 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788532 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193794830 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788530 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788528 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193794828 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|193788526 calcium channel, voltage-dependent, L type, alpha 1... 28 1.6
gi|47086907 lysophosphatidylcholine acyltransferase 2 [Homo sapi... 28 2.1
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 28 2.1
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 27 3.6
gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo... 27 4.6
gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo sap... 27 4.6
>gi|169203550 PREDICTED: hypothetical protein [Homo sapiens]
Length = 91
Score = 196 bits (497), Expect = 4e-51
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MQEGDIGLEGLPPREVPTVGHCAEWSEITSSAPGSSLGKMGAPRDCSSCGPQVLGYVILQ 60
MQEGDIGLEGLPPREVPTVGHCAEWSEITSSAPGSSLGKMGAPRDCSSCGPQVLGYVILQ
Sbjct: 1 MQEGDIGLEGLPPREVPTVGHCAEWSEITSSAPGSSLGKMGAPRDCSSCGPQVLGYVILQ 60
Query: 61 PHKGPRRAWERTLWAKEIGNLLSIQGFYQDL 91
PHKGPRRAWERTLWAKEIGNLLSIQGFYQDL
Sbjct: 61 PHKGPRRAWERTLWAKEIGNLLSIQGFYQDL 91
>gi|169202954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 164
Score = 155 bits (393), Expect = 5e-39
Identities = 71/73 (97%), Positives = 72/73 (98%)
Query: 1 MQEGDIGLEGLPPREVPTVGHCAEWSEITSSAPGSSLGKMGAPRDCSSCGPQVLGYVILQ 60
MQEGDIGLEGLPPREVPTVGHCAEWSEITSSAPGSSLGKMGAPRDCSSCGPQVLGYVILQ
Sbjct: 1 MQEGDIGLEGLPPREVPTVGHCAEWSEITSSAPGSSLGKMGAPRDCSSCGPQVLGYVILQ 60
Query: 61 PHKGPRRAWERTL 73
PHKGPRRAWER +
Sbjct: 61 PHKGPRRAWEREI 73
>gi|4507041 solute carrier family 6 (neurotransmitter transporter,
dopamine), member 3 [Homo sapiens]
Length = 620
Score = 33.1 bits (74), Expect = 0.050
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 50 GPQVLGYVILQPHKGPRRAWERTLWAKEIGNLLSIQGFYQDL 91
G Q+ + P + P A +R W K+I LLS+ GF DL
Sbjct: 39 GVQLTSSTLTNPRQSPVEAQDRETWGKKIDFLLSVIGFAVDL 80
>gi|4507043 solute carrier family 6 member 4 [Homo sapiens]
Length = 630
Score = 32.7 bits (73), Expect = 0.065
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 10 GLPPREVPTVGHCAEWSEITSSAPGSSLGKMGAPRDCSSCGPQVLGYVILQPHKGPRRAW 69
G+ + VPT G E +I++ S++ GA D P ++ + H+G
Sbjct: 25 GVLQKVVPTPGDKVESGQISNGY--SAVPSPGAGDDTRHSIPATTTTLVAELHQG----- 77
Query: 70 ERTLWAKEIGNLLSIQGFYQDL 91
ER W K++ LLS+ G+ DL
Sbjct: 78 ERETWGKKVDFLLSVIGYAVDL 99
>gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens]
Length = 1580
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 10 GLPPREVPTVGHCAEWSEIT----SSAPGSSLGKMGAPRDCSSCGPQVLGYVILQPHKGP 65
G PP +P + + + + + PG +L + APR CS G G LQPH P
Sbjct: 939 GPPPTPLPNMERMSLKTRLALLGDALEPGVALPPVHAPRRCSDGGAHGYGRRHLQPHDAP 998
>gi|193788732 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 5 [Homo sapiens]
Length = 2166
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1988 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2041
>gi|193788730 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 4 [Homo sapiens]
Length = 2173
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1995 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2048
>gi|193788728 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 3 [Homo sapiens]
Length = 2179
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 2001 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2054
>gi|193788724 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 2 [Homo sapiens]
Length = 2186
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 2008 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2061
>gi|193788720 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 1 [Homo sapiens]
Length = 2221
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 2043 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2096
>gi|120433602 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 18 [Homo sapiens]
Length = 2138
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1960 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2013
>gi|193788548 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 20 [Homo sapiens]
Length = 2127
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1949 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2002
>gi|193788544 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 19 [Homo sapiens]
Length = 2135
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1957 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2010
>gi|193788542 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 17 [Homo sapiens]
Length = 2138
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1960 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2013
>gi|193788540 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 16 [Homo sapiens]
Length = 2138
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1960 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2013
>gi|193788538 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 15 [Homo sapiens]
Length = 2138
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1960 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2013
>gi|193788536 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 14 [Homo sapiens]
Length = 2138
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1960 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2013
>gi|193794832 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoforom 13 [Homo sapiens]
Length = 2144
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1966 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2019
>gi|193788534 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 12 [Homo sapiens]
Length = 2146
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1968 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2021
>gi|193788532 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 11 [Homo sapiens]
Length = 2146
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1968 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2021
>gi|193794830 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 10 [Homo sapiens]
Length = 2155
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1977 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2030
>gi|193788530 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 9 [Homo sapiens]
Length = 2157
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1979 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2032
>gi|193788528 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 8 [Homo sapiens]
Length = 2157
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1979 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2032
>gi|193794828 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 7 [Homo sapiens]
Length = 2157
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1979 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2032
>gi|193788526 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 6 [Homo sapiens]
Length = 2158
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 17/54 (31%)
Query: 7 GLEGLPPREVPTVG-----------------HCAEWSEITSSAPGSSLGKMGAP 43
G G PP+ VPT+ HC W+E T GSS + P
Sbjct: 1980 GSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRP 2033
>gi|47086907 lysophosphatidylcholine acyltransferase 2 [Homo
sapiens]
Length = 544
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 19 VGHCAEWSEITSSAPGSSLGKMG-----APRDCSSCGPQVLGYVILQPHKGPRR 67
+ CA+ +E+ ++ PG+ +G +G PR S P V + Q G R
Sbjct: 1 MSRCAQAAEVAATVPGAGVGNVGLRPPMVPRQASFFPPPVPNPFVQQTQIGSAR 54
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 4 GDIGLEGLPPREVPTVGHCAEWSEITSSAPGSSLGKMGAPRDCSSCGPQ 52
G IG +G P + PT S TS PGS+ G G+P S GPQ
Sbjct: 420 GAIGTDGTPGAKGPT------GSPGTSGPPGSA-GPPGSPGPQGSTGPQ 461
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 26.9 bits (58), Expect = 3.6
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 8 LEGLPPREVPTVGHCAEWSEITSSAPGSSLGKMGAPRDCSSCGPQVLGYVILQPHKGPRR 67
L+GL + TV HC +E PG GK A +C + G
Sbjct: 583 LQGLSEFKAATVSHCGPGAEEGEQGPGG--GKTPAGNECELPAAPIQG--------AGDG 632
Query: 68 AWERTLWAKEIGNLL 82
A +R A E+G +L
Sbjct: 633 ALQRVAQAAELGRVL 647
>gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo
sapiens]
Length = 1336
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 21 HCAEWSEITSSAPGSSLGKMGA---PRDCSSCGPQVLGYVILQPHKG 64
HC W E+ S P +L +G P+ S P + G + KG
Sbjct: 659 HCHSWEEMAVSEPSEALELVGTDILPKPVISASPTIRGQELQLRCKG 705
>gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo
sapiens]
Length = 807
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 17 PTVGHCAEWSE--ITSSAPGS-SLGKMGAPRDCSSCGPQVLGYVILQPHKGP 65
PT G CA + SSA GS S + PR CS GP + P P
Sbjct: 727 PTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLMAFSPSLPP 778
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,603,096
Number of Sequences: 37866
Number of extensions: 209418
Number of successful extensions: 642
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 58
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.