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Search of human proteins with 169178462
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169178462 PREDICTED: similar to NG5 protein [Homo sapiens]
(93 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169178462 PREDICTED: similar to NG5 protein [Homo sapiens] 184 1e-47
gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens] 184 1e-47
gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens] 184 1e-47
gi|77681565 NG5 protein [Homo sapiens] 64 3e-11
gi|13376347 hypothetical protein LOC79953 [Homo sapiens] 45 1e-05
gi|151101191 interferon induced transmembrane protein 2 (1-8D) [... 39 0.001
gi|150010589 interferon induced transmembrane protein 1 (9-27) [... 38 0.002
gi|70608168 interferon induced transmembrane protein 5 [Homo sap... 36 0.008
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens] 36 0.008
gi|148612842 interferon-induced transmembrane protein 3 (1-8U) [... 35 0.010
gi|154707844 transmembrane protein 91 isoform a [Homo sapiens] 35 0.017
gi|157743286 transmembrane protein 90A [Homo sapiens] 34 0.022
gi|211904185 hypothetical protein LOC387890 [Homo sapiens] 33 0.038
gi|223671915 GDP-fucose transporter 1 isoform a [Homo sapiens] 27 4.6
gi|223671919 GDP-fucose transporter 1 isoform b [Homo sapiens] 27 4.6
gi|223671917 GDP-fucose transporter 1 isoform b [Homo sapiens] 27 4.6
gi|157694526 Fc receptor-like 5 [Homo sapiens] 26 6.0
gi|239756716 PREDICTED: hypothetical protein XP_002345022 [Homo ... 26 7.9
gi|239751211 PREDICTED: hypothetical protein XP_002347748 [Homo ... 26 7.9
>gi|169178462 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 93
Score = 184 bits (468), Expect = 1e-47
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA 60
MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA
Sbjct: 1 MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA 60
Query: 61 SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 93
SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP
Sbjct: 61 SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 93
>gi|113421234 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 288
Score = 184 bits (468), Expect = 1e-47
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA 60
MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA
Sbjct: 196 MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA 255
Query: 61 SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 93
SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP
Sbjct: 256 SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 288
>gi|113420954 PREDICTED: similar to NG5 protein [Homo sapiens]
Length = 288
Score = 184 bits (468), Expect = 1e-47
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA 60
MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA
Sbjct: 196 MAGVPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEA 255
Query: 61 SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 93
SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP
Sbjct: 256 SRKARSLVLFSLLFGVFVSTSWVIYVVVALYLP 288
>gi|77681565 NG5 protein [Homo sapiens]
Length = 306
Score = 63.9 bits (154), Expect = 3e-11
Identities = 37/86 (43%), Positives = 48/86 (55%)
Query: 5 PGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKA 64
PG A +E R P DYM +VL T+ C TG+IAI + + R AL RGD+ AE ASR+A
Sbjct: 209 PGLALLEPRRPPHDYMPIAVLTTICCFWPTGIIAIFKAVQVRTALARGDMVSAEIASREA 268
Query: 65 RSLVLFSLLFGVFVSTSWVIYVVVAL 90
R+ SL G+ I VV +
Sbjct: 269 RNFSFISLAVGIAAMVLCTILTVVII 294
>gi|13376347 hypothetical protein LOC79953 [Homo sapiens]
Length = 258
Score = 45.4 bits (106), Expect = 1e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 16 PKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLFG 75
P+D++ SV L C G+ A SHE A+ +GDL QA +SR+A L + S+ G
Sbjct: 178 PRDHLGLSVFSMLCCFWPLGIAAFYLSHETNKAVAKGDLHQASTSSRRALFLAVLSITIG 237
Query: 76 VFVSTSWVIYVVVAL 90
V + ++ L
Sbjct: 238 TGVYVGVAVALIAYL 252
>gi|151101191 interferon induced transmembrane protein 2 (1-8D)
[Homo sapiens]
Length = 132
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 18 DYMMESVLVTLF---CCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF 74
D+++ S+ TLF CCL G IA YS ++R GD+ A+ + A+ L +++L+
Sbjct: 55 DHVVWSLFNTLFMNTCCL--GFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALIL 112
Query: 75 GVFVSTSWVIYVVVAL 90
G+F++ +I V+ +
Sbjct: 113 GIFMTILLIIIPVLVV 128
>gi|150010589 interferon induced transmembrane protein 1 (9-27)
[Homo sapiens]
Length = 125
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 18 DYMMESVLVTLF---CCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF 74
D+++ S+ TLF CCL G IA YS ++R GD+ A+ + A+ L +++L+
Sbjct: 35 DHVVWSLFNTLFLNWCCL--GFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALIL 92
Query: 75 GVFVSTSWVIYVV 87
G+ ++ +++ +V
Sbjct: 93 GILMTIGFILLLV 105
>gi|70608168 interferon induced transmembrane protein 5 [Homo
sapiens]
Length = 132
Score = 35.8 bits (81), Expect = 0.008
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 14 PLPKDYMMESVLVTLF---CCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKAR 65
P P+D+++ SV TL+ CCL G +A+ YS +AR GDL A KA+
Sbjct: 31 PPPRDHLIWSVFSTLYLNLCCL--GFLALAYSIKARDQKVVGDLEAARRFGSKAK 83
>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
Length = 340
Score = 35.8 bits (81), Expect = 0.008
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 5 PGPATVEHRPLPKDYMMESVLVTLFCCLL-TGLIAIVYSHEARAALGRGDLAQAEEASRK 63
PG E P+DY++ ++L + FC + ++A Y+ +R +L +GD+ A+ R
Sbjct: 254 PGVEGGEGTQKPRDYIILAIL-SCFCPMWPVNIVAFAYAVMSRNSLQQGDVDGAQRLGRV 312
Query: 64 ARSLVLFSLLFGVFV 78
A+ L + +L+ GV +
Sbjct: 313 AKLLSIVALVGGVLI 327
>gi|148612842 interferon-induced transmembrane protein 3 (1-8U)
[Homo sapiens]
Length = 133
Score = 35.4 bits (80), Expect = 0.010
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 18 DYMMESVLVTLF---CCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF 74
D+++ S+ TLF CCL G IA YS ++R GD+ A+ + A+ L +++L+
Sbjct: 56 DHVVWSLFNTLFMNPCCL--GFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALIL 113
Query: 75 GVFVSTSWVIYVVV 88
G+ ++ ++ V+
Sbjct: 114 GILMTILLIVIPVL 127
>gi|154707844 transmembrane protein 91 isoform a [Homo sapiens]
Length = 172
Score = 34.7 bits (78), Expect = 0.017
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 15 LPKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF 74
LP D++ +V L C G+ A + + A +GD+ A ASR R+ +L L
Sbjct: 91 LPHDHLGLAVFSMLCCFWPVGIAAFCLAQKTNKAWAKGDIQGAGAASR--RAFLLGVLAV 148
Query: 75 GVFVSTSWVIYVVVALYL 92
G+ V T V +A YL
Sbjct: 149 GLGVCTYAAALVTLAAYL 166
>gi|157743286 transmembrane protein 90A [Homo sapiens]
Length = 238
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 16 PKDYMMESVLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLFG 75
P+D++ ++ L C G+ A +S A+ +GD A SR+A LF
Sbjct: 158 PRDHLGLTLFSMLCCFWPLGIAAFYFSQGTSKAISKGDFRLASTTSRRA----LFLATLA 213
Query: 76 VFVSTSWVIYVVVAL 90
+ V + VVVAL
Sbjct: 214 IAVGAGLYVAVVVAL 228
>gi|211904185 hypothetical protein LOC387890 [Homo sapiens]
Length = 109
Score = 33.5 bits (75), Expect = 0.038
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 9 TVEHRPLPKDYMMESVLVTLFC-CLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSL 67
T E P+PK+Y+ ++ V+ FC ++A+V+S + + GD A R A+ +
Sbjct: 27 TEEDVPMPKNYLWLTI-VSCFCPAYPINIVALVFSIMSLNSYNDGDYEGARRLGRNAKWV 85
Query: 68 VLFSLLFGVFV 78
+ S++ G+ +
Sbjct: 86 AIASIIIGLLI 96
>gi|223671915 GDP-fucose transporter 1 isoform a [Homo sapiens]
Length = 364
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 24 VLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF-GVFVSTSW 82
+ VT + CL+T L+ S A G D R ARS++ S++F G+ +
Sbjct: 74 IFVTFYQCLVTTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPLSVVFIGMITFNNL 133
Query: 83 VI-YVVVALY 91
+ YV VA Y
Sbjct: 134 CLKYVGVAFY 143
>gi|223671919 GDP-fucose transporter 1 isoform b [Homo sapiens]
Length = 351
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 24 VLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF-GVFVSTSW 82
+ VT + CL+T L+ S A G D R ARS++ S++F G+ +
Sbjct: 61 IFVTFYQCLVTTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPLSVVFIGMITFNNL 120
Query: 83 VI-YVVVALY 91
+ YV VA Y
Sbjct: 121 CLKYVGVAFY 130
>gi|223671917 GDP-fucose transporter 1 isoform b [Homo sapiens]
Length = 351
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 24 VLVTLFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSLVLFSLLF-GVFVSTSW 82
+ VT + CL+T L+ S A G D R ARS++ S++F G+ +
Sbjct: 61 IFVTFYQCLVTTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPLSVVFIGMITFNNL 120
Query: 83 VI-YVVVALY 91
+ YV VA Y
Sbjct: 121 CLKYVGVAFY 130
>gi|157694526 Fc receptor-like 5 [Homo sapiens]
Length = 977
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 4 VPGPATVEHRPLPKDYMMESVLVTLFCCLLTGLIAIVYS-HEARAALGR 51
VP V + P+D + E VTL C G + I+Y H AAL R
Sbjct: 375 VPVSHPVLNLSSPEDLIFEGAKVTLHCEAQRGSLPILYQFHHEGAALER 423
>gi|239756716 PREDICTED: hypothetical protein XP_002345022 [Homo
sapiens]
Length = 208
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 28 LFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSL---VLFSLLF 74
+F C L + +SH R G+ A + R+L ++FSLLF
Sbjct: 134 IFLCALQRSEVLCWSHPLRRREGKRKTLSAPQGGSSLRTLPFRIIFSLLF 183
>gi|239751211 PREDICTED: hypothetical protein XP_002347748 [Homo
sapiens]
Length = 208
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 28 LFCCLLTGLIAIVYSHEARAALGRGDLAQAEEASRKARSL---VLFSLLF 74
+F C L + +SH R G+ A + R+L ++FSLLF
Sbjct: 134 IFLCALQRSEVLCWSHPLRRREGKRKTLSAPQGGSSLRTLPFRIIFSLLF 183
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,182,111
Number of Sequences: 37866
Number of extensions: 102929
Number of successful extensions: 425
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 19
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.