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Search of human proteins with 11128033
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11128033 protocadherin gamma subfamily B, 3 isoform 1
precursor [Homo sapiens]
(929 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 1850 0.0
gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precurs... 1596 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 1296 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 1286 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 1285 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 1278 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 1233 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 1229 0.0
gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precurs... 1044 0.0
gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precurs... 1040 0.0
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 1038 0.0
gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precurs... 1028 0.0
gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precurs... 983 0.0
gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precurs... 975 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 922 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 912 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 910 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 906 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 904 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 904 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 902 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 900 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 892 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 884 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 883 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 873 0.0
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 809 0.0
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 786 0.0
gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precur... 679 0.0
gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precurs... 666 0.0
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1850 bits (4793), Expect = 0.0
Identities = 929/929 (100%), Positives = 929/929 (100%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 781 LCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
LCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 781 LCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
Query: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
Query: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|14270496 protocadherin gamma subfamily B, 3 isoform 2 precursor
[Homo sapiens]
Length = 814
Score = 1596 bits (4133), Expect = 0.0
Identities = 805/805 (100%), Positives = 805/805 (100%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD
Sbjct: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT
Sbjct: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL
Sbjct: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP
Sbjct: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE
Sbjct: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA
Sbjct: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV
Sbjct: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD
Sbjct: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY
Sbjct: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML
Sbjct: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR
Sbjct: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL
Sbjct: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
Query: 781 LCDEASWFESNDNPEMPSNSGNLQK 805
LCDEASWFESNDNPEMPSNSGNLQK
Sbjct: 781 LCDEASWFESNDNPEMPSNSGNLQK 805
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 1296 bits (3354), Expect = 0.0
Identities = 666/932 (71%), Positives = 751/932 (80%), Gaps = 4/932 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
M SSG G ++L FLLSL L IRY+IPEEL + S+VGNLAKDLG V D
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LP R LRV AEK++FTV+PE+G+LLVSDRIDRE+ICGK+ CVL+F+ VAE PLN F++
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V++QDINDN P F Q L+I E G TF L+ A D DVG NSLQ+Y+L+ + +F L
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
+K+ DG +YPEL+LK LDREE H LVLTAVDGG+P +S TTQIR+ V DANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV + E++P G VL+V A D DEGINAEI Y+F N+ ++V+ F L+ KTGE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+TT +LDFE SYT+ +EAKD G A+C +Q++I D+ND APE+ + S S + ED+
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
GT +ALIKT D DSG NGE+ CQ+ GN F + +KN Y+LVTDGALDRE+IPEYN+
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATD G PPLSSS +TLHI DVNDN PVF Q SY VHVAENNPPGASIA + ASDPD
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGP+G VSY IVASDL+PRE+ SYVSVSA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV D NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HLIFADSLQE+ PDLSDR PSDPQA+LQF+LVVALALISVLF LAVILAISLRLR SSR
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
FQPG+ K PGVLP YSE TLPYSYN C AS S+ TEF FLNI E QDL
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 781 LCDEASWFESNDN---PEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 837
+CD ASW E N N +P S + KQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 781 VCDNASW-EQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 839
Query: 838 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 897
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 840 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 899
Query: 898 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 900 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1286 bits (3327), Expect = 0.0
Identities = 663/937 (70%), Positives = 757/937 (80%), Gaps = 22/937 (2%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V I+DIND+ P F+QN EL+ISE A G F LE A+D D+G+NSLQ+Y LS +P FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
I KE DGS+YPEL L+ LDRE+Q +H LVLTA+DGG P S TT++R+ V DANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF +D+YRV++ EN+P G++VL+V A D DEGIN+EI Y+F G Q+F L+SK+GE
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG----QIFSLNSKSGE 296
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+TT +LDFEE Y++ VE +DGG A C V+I+I DENDN+PE+T S + I E+A
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
GT +ALIK HD DSG NGE+ CQL+G PFKI+ +KN+Y+LVTDG LDREQ PEYNV
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATD+G PPLSSS ++ LHI DVNDN PVFHQASY V V ENNPPGASIA V ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LG NG VSY I+ASDLEP L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD++DRP PSDPQAELQF+LVVALALISVLFLLAVILA++LRLR SS
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PA FQPG+C K+ P V P YS+ TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
Query: 781 LCDEASW--------FESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDT 832
LC ++S ES +PE+ QAPPNTDWRFSQAQRPGTSGSQNGDDT
Sbjct: 776 LCGDSSGALFPLCNSSESTSHPEL---------QAPPNTDWRFSQAQRPGTSGSQNGDDT 826
Query: 833 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 892
GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV
Sbjct: 827 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 886
Query: 893 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 887 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 1285 bits (3326), Expect = 0.0
Identities = 658/931 (70%), Positives = 755/931 (81%), Gaps = 10/931 (1%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V I+DIND+ P F+QN EL+ISE A G F L SA D D+G N+LQ Y LSP HFSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
I KE DGS+YPE+VLK PLDRE+Q +HL LTA+D G P S T QI V+V DANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV+++EN+ G++VL+V A D DEG+NAEI ++F + + F L+S TGE
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+T + LDFEE Y+I +EA+DGG A C V++++ DENDNAPE+ S I EDA
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
ELGT +AL+K D DS NGE+ C+L+G+ PFKI+ ++NTY+LVTD LDREQ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
T+TATD+G PPLSSS +ITLHI DVNDN PVF Q+SY VHVAENNPPGASI+ VRASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGPNG VSY I+ASDLE RELSSYVS+SA SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLVDDRNDNAP VLYPALGP+GSALFDMVP +AEPGYLVTKVVAVDADSG+
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+A RQRLLV VRDGGQ PLSAT L
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD++DRP PSD QAELQF+LVVALALISVLFL+A+ILAI+LRLR SS
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PA+ FQPG+C K+ V P YSE TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777
Query: 781 LCDEAS--WFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 838
LC ++S F ++ E+ S+ +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 778 LCGDSSGALFPLCNSSELTSH-----QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 832
Query: 839 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 898
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 833 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 892
Query: 899 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 893 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 1278 bits (3306), Expect = 0.0
Identities = 662/917 (72%), Positives = 742/917 (80%), Gaps = 4/917 (0%)
Query: 15 RMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKKF 74
++LF FLLSL +S+ IRY IPEEL GS VG LAKDLG V +LPTR LRV AE +
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
Query: 75 FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFS 134
F VS E+G+LLV+ RIDRE+ICG+K C LEFE VAE P+N FHV V+IQDINDN P F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 QNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPEL 194
+LEI E AL G F+L+SAQD DV NSL+ Y ++P+ +FSL KE+ DGS+YP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 VLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAEN 254
+L+ PLDRE Q H L+LTA+DGG+P S TT I + V DANDN PVF+Q++YRV++ EN
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 LPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERDS 314
+P G+SVL+VMA D DEGINAEI YAF+N LF L+ TG++TT G LDFEE
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPIST-SLFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHDL 374
Y + VEAKDGG HTA+C VQI+I DENDNAPE+T S S I ED++LGT +ALIK D
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSS 434
DSG NG + C + PFK+ +KN Y+LV GAL+REQ +YNVTI ATDKG P LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVAS 494
+ITLHI D+NDN PVFHQASY VHV+ENNPPGASIA V ASDPDLGPNG VSY I+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDD 554
DLEPREL SYVSVS +SGVVFAQRAFDHEQLRAFELTLQARDQGSP LSANVSLRVLV D
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 RNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEP 614
NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+NAWLSYH++QASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPD 674
GLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT LHLIFADSLQE+ PD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 LSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYFQPGVCFK 734
LSDRP PSDPQ ELQF+LVVALALISVLFLLAVILAI+LRLR SS TEG FQ G+C K
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 TVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEASWF--ESND 792
+ PGV P +SE TLPYSYN C ASHS+ TEF LN+ E A PQDLLCD+ S SN+
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNE 790
Query: 793 NPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 852
+ ++ + QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS
Sbjct: 791 DHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILAS 850
Query: 853 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 912
ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
Sbjct: 851 ASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA 910
Query: 913 PAGGNGNKKKSGKKEKK 929
PAGGNGNKKKSGKKEKK
Sbjct: 911 PAGGNGNKKKSGKKEKK 927
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 1233 bits (3191), Expect = 0.0
Identities = 632/931 (67%), Positives = 727/931 (78%), Gaps = 3/931 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG S R AG R++LF LL L LSEPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
+ R LRV AEK F+V E+G+LLV +RIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V+I+D+ND+ P F + LEI E A G +L+ A DPD+ +NS++ Y ++ +P+FSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
+ + N DG +YPEL L+ LDREEQ H L+LTA+DGG+P RS T I + V D NDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF++D YR++++ENLP GS VL+V A D DEG+NAEI Y F + + + +F LD KTG
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+ DFE+ + YT+ VEAKDGG + CKV I+I DENDN+PEI + S S I E++
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
G VAL KT DLD G NGE+ C ++ + PFKI + N Y+LVTDGALDREQ PEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TI ATD+G PPLSSS++ITL++ D+NDN PVF Q SY VHVAENNPPGASIA V ASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LG NG +SY IVASDLEP +SSYVSVSA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
TLSANVSLRVLV DRNDNAP VLYPALGP+GSA FDMVPRSAEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FAD+LQEI PDLSDRP SDPQAELQF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PAT F PG+C K+ P V P YSE TLPYSYN C A H+ EF FL + +D+
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDM 779
Query: 781 LC--DEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 838
+C + + ++ S+ L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 780 VCSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 839
Query: 839 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 898
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 840 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 899
Query: 899 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 900 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 1229 bits (3180), Expect = 0.0
Identities = 629/929 (67%), Positives = 722/929 (77%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG S R AG R++LF LL L L EPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
+ R LRV AEK F+V ++G+LLV DRIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V+I+D+ND+ P F ++ LEISE G LESA+DPD+ +NSL +Y LSP+ +FSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
++K+N DG +YPELVL+ LDRE Q HHLVLTA+DGG+P RS T QIR++V DANDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV++ E++P G+S+L+V A D DEGIN+EI Y+F + + + +F LD TG
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+ T LDFEE + YTI +EAKD G + CKV +++ DENDN+PEI + S S I ED+
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
G VAL KT D DSG NGE+ C L PFKI + N Y+LVTD ALDREQ PEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TI ATD+G PPLSSSKTITLHI DVNDN PVF Q++Y VHV ENN PGASIA V ASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
G NG VSY ++ASDLE R LSSYVSVSA+SGVVFAQRAFDHEQLR FELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFD VPR+A+PGYLVTKVVAVDADSG+
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH+VQASEPGLFSLGLRTGEVR R LGD+++ RQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD SD PTPSD QAE+QF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
P F+ +C K+ P P YSE TLPY+YN C N EF F A QD
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 781 LCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
L ++ S P + ++ L++QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 781 LNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 840
Query: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 841 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 900
Query: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|14270493 protocadherin gamma subfamily B, 2 isoform 2 precursor
[Homo sapiens]
Length = 811
Score = 1044 bits (2699), Expect = 0.0
Identities = 539/793 (67%), Positives = 622/793 (78%), Gaps = 1/793 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
M SSG G ++L FLLSL L IRY+IPEEL + S+VGNLAKDLG V D
Sbjct: 1 MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LP R LRV AEK++FTV+PE+G+LLVSDRIDRE+ICGK+ CVL+F+ VAE PLN F++
Sbjct: 61 LPARKLRVSAEKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIA 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V++QDINDN P F Q L+I E G TF L+ A D DVG NSLQ+Y+L+ + +F L
Sbjct: 121 VIVQDINDNTPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
+K+ DG +YPEL+LK LDREE H LVLTAVDGG+P +S TTQIR+ V DANDNPP
Sbjct: 181 AEKQTPDGRKYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV + E++P G VL+V A D DEGINAEI Y+F N+ ++V+ F L+ KTGE
Sbjct: 241 VFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYSFHNVDEQVKHFFNLNEKTGE 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+TT +LDFE SYT+ +EAKD G A+C +Q++I D+ND APE+ + S S + ED+
Sbjct: 301 ITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVTSVSTPLPEDS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
GT +ALIKT D DSG NGE+ CQ+ GN F + +KN Y+LVTDGALDRE+IPEYN+
Sbjct: 361 PPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATD G PPLSSS +TLHI DVNDN PVF Q SY VHVAENNPPGASIA + ASDPD
Sbjct: 421 TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGP+G VSY IVASDL+PRE+ SYVSVSA+SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 481 LGPSGQVSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV D NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 541 ALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HLIFADSLQE+ PDLSDR PSDPQA+LQF+LVVALALISVLF LAVILAISLRLR SSR
Sbjct: 661 HLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSR 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
FQPG+ K PGVLP YSE TLPYSYN C AS S+ TEF FLNI E QDL
Sbjct: 721 SDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNITPELVPAQDL 780
Query: 781 LCDEASWFESNDN 793
+CD ASW E N N
Sbjct: 781 VCDNASW-EQNTN 792
>gi|14270505 protocadherin gamma subfamily B, 5 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 1040 bits (2689), Expect = 0.0
Identities = 540/806 (66%), Positives = 634/806 (78%), Gaps = 13/806 (1%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V I+DIND+ P F+QN EL+ISE A G F LE A+D D+G+NSLQ+Y LS +P FSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
I KE DGS+YPEL L+ LDRE+Q +H LVLTA+DGG P S TT++R+ V DANDNPP
Sbjct: 181 IIKEKQDGSKYPELALEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF +D+YRV++ EN+P G++VL+V A D DEGIN+EI Y+F G Q+F L+SK+GE
Sbjct: 241 VFNRDVYRVSLRENVPPGTTVLQVSATDQDEGINSEITYSFYRTG----QIFSLNSKSGE 296
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+TT +LDFEE Y++ VE +DGG A C V+I+I DENDN+PE+T S + I E+A
Sbjct: 297 ITTQKKLDFEETKEYSMVVEGRDGGGLVAQCTVEINIQDENDNSPEVTFHSLLEMILENA 356
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
GT +ALIK HD DSG NGE+ CQL+G PFKI+ +KN+Y+LVTDG LDREQ PEYNV
Sbjct: 357 VPGTLIALIKIHDQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNV 416
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TITATD+G PPLSSS ++ LHI DVNDN PVFHQASY V V ENNPPGASIA V ASD D
Sbjct: 417 TITATDRGKPPLSSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLD 476
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LG NG VSY I+ASDLEP L+SYVS+SA+SGVVFAQRAFD+EQLR FELTLQARDQGSP
Sbjct: 477 LGLNGQVSYSIMASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSP 536
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+
Sbjct: 537 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGH 596
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 597 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 656
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD++DRP PSDPQAELQF+LVVALALISVLFLLAVILA++LRLR SS
Sbjct: 657 HLVFADSLQEVLPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRLRRSSS 716
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PA FQPG+C K+ P V P YS+ TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 717 PAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 775
Query: 781 LCDEASW--------FESNDNPEMPS 798
LC ++S ES +PE+ S
Sbjct: 776 LCGDSSGALFPLCNSSESTSHPELVS 801
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 1038 bits (2684), Expect = 0.0
Identities = 531/786 (67%), Positives = 623/786 (79%), Gaps = 3/786 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG+ +G G A + +LFLFLLSL L E IRY IPEE+ +GS+VGNLA DLGF V +
Sbjct: 1 MGSGAGELGRAERLPVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQE 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
LPTR LRV +EK +FTVS E+G LLVS R+DREEICGKK C LEFE VAE PLNF+HV
Sbjct: 61 LPTRKLRVSSEKPYFTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVN 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V I+DIND+ P F+QN EL+ISE A G F L SA D D+G N+LQ Y LSP HFSL
Sbjct: 121 VEIEDINDHTPKFTQNSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
I KE DGS+YPE+VLK PLDRE+Q +HL LTA+D G P S T QI V+V DANDN P
Sbjct: 181 INKEKSDGSKYPEMVLKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV+++EN+ G++VL+V A D DEG+NAEI ++F + + F L+S TGE
Sbjct: 241 VFSQDVYRVSLSENVYPGTTVLQVTATDQDEGVNAEITFSFSEASQITQ--FDLNSNTGE 298
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+T + LDFEE Y+I +EA+DGG A C V++++ DENDNAPE+ S I EDA
Sbjct: 299 ITVLNTLDFEEVKEYSIVLEARDGGGMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDA 358
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
ELGT +AL+K D DS NGE+ C+L+G+ PFKI+ ++NTY+LVTD LDREQ PEYN+
Sbjct: 359 ELGTHIALLKVRDKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNI 418
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
T+TATD+G PPLSSS +ITLHI DVNDN PVF Q+SY VHVAENNPPGASI+ VRASDPD
Sbjct: 419 TVTATDRGKPPLSSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPD 478
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LGPNG VSY I+ASDLE RELSSYVS+SA SGVVFAQRAFDHEQLRAFELTLQARDQGSP
Sbjct: 479 LGPNGQVSYCIMASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSP 538
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLVDDRNDNAP VLYPALGP+GSALFDMVP +AEPGYLVTKVVAVDADSG+
Sbjct: 539 ALSANVSLRVLVDDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGH 598
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+A RQRLLV VRDGGQ PLSAT L
Sbjct: 599 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATL 658
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD++DRP PSD QAELQF+LVVALALISVLFL+A+ILAI+LRLR SS
Sbjct: 659 HLVFADSLQEVLPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIALRLRRSSS 718
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PA+ FQPG+C K+ V P YSE TLPYSYN C A H+ TEF FL + ++ QD+
Sbjct: 719 PASWSCFQPGLCVKSESVVPPNYSEGTLPYSYNLCVA-HTGKTEFNFLKCSEQLSSGQDI 777
Query: 781 LCDEAS 786
LC ++S
Sbjct: 778 LCGDSS 783
>gi|14270490 protocadherin gamma subfamily B, 1 isoform 2 precursor
[Homo sapiens]
Length = 810
Score = 1028 bits (2658), Expect = 0.0
Identities = 536/772 (69%), Positives = 611/772 (79%), Gaps = 2/772 (0%)
Query: 15 RMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKKF 74
++LF FLLSL +S+ IRY IPEEL GS VG LAKDLG V +LPTR LRV AE +
Sbjct: 13 QVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED-Y 71
Query: 75 FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFS 134
F VS E+G+LLV+ RIDRE+ICG+K C LEFE VAE P+N FHV V+IQDINDN P F
Sbjct: 72 FNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFV 131
Query: 135 QNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPEL 194
+LEI E AL G F+L+SAQD DV NSL+ Y ++P+ +FSL KE+ DGS+YP L
Sbjct: 132 AKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVL 191
Query: 195 VLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAEN 254
+L+ PLDRE Q H L+LTA+DGG+P S TT I + V DANDN PVF+Q++YRV++ EN
Sbjct: 192 LLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQEN 251
Query: 255 LPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERDS 314
+P G+SVL+VMA D DEGINAEI YAF+N LF L+ TG++TT G LDFEE
Sbjct: 252 VPWGTSVLRVMATDQDEGINAEITYAFLNSPIST-SLFNLNPNTGDITTNGTLDFEETSR 310
Query: 315 YTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHDL 374
Y + VEAKDGG HTA+C VQI+I DENDNAPE+T S S I ED++LGT +ALIK D
Sbjct: 311 YVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 375 DSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSS 434
DSG NG + C + PFK+ +KN Y+LV GAL+REQ +YNVTI ATDKG P LSS
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 435 SKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVAS 494
+ITLHI D+NDN PVFHQASY VHV+ENNPPGASIA V ASDPDLGPNG VSY I+AS
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 495 DLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDD 554
DLEPREL SYVSVS +SGVVFAQRAFDHEQLRAFELTLQARDQGSP LSANVSLRVLV D
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 555 RNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEP 614
NDNAP VLYPALGP+GSALFDMVPR+AEPGYLVTKVVAVDADSG+NAWLSYH++QASEP
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEP 610
Query: 615 GLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPD 674
GLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT LHLIFADSLQE+ PD
Sbjct: 611 GLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPD 670
Query: 675 LSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYFQPGVCFK 734
LSDRP PSDPQ ELQF+LVVALALISVLFLLAVILAI+LRLR SS TEG FQ G+C K
Sbjct: 671 LSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCSK 730
Query: 735 TVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEAS 786
+ PGV P +SE TLPYSYN C ASHS+ TEF LN+ E A PQDLLCD+ S
Sbjct: 731 SGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPS 782
>gi|14270502 protocadherin gamma subfamily B, 6 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 983 bits (2541), Expect = 0.0
Identities = 506/782 (64%), Positives = 596/782 (76%), Gaps = 1/782 (0%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG S R AG R++LF LL L LSEPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
+ R LRV AEK F+V E+G+LLV +RIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V+I+D+ND+ P F + LEI E A G +L+ A DPD+ +NS++ Y ++ +P+FSL
Sbjct: 121 VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
+ + N DG +YPEL L+ LDREEQ H L+LTA+DGG+P RS T I + V D NDNPP
Sbjct: 181 MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF++D YR++++ENLP GS VL+V A D DEG+NAEI Y F + + + +F LD KTG
Sbjct: 241 VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+ DFE+ + YT+ VEAKDGG + CKV I+I DENDN+PEI + S S I E++
Sbjct: 301 IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
G VAL KT DLD G NGE+ C ++ + PFKI + N Y+LVTDGALDREQ PEYNV
Sbjct: 361 PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TI ATD+G PPLSSS++ITL++ D+NDN PVF Q SY VHVAENNPPGASIA V ASDPD
Sbjct: 421 TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
LG NG +SY IVASDLEP +SSYVSVSA+SGVVFAQRAFDHEQLRAF LTLQARD GSP
Sbjct: 481 LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
TLSANVSLRVLV DRNDNAP VLYPALGP+GSA FDMVPRSAEPGYLVTKVVAVDADSG+
Sbjct: 541 TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH++QASEPGLFSLGLRTGEVRTAR LGDR+AARQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FAD+LQEI PDLSDRP SDPQAELQF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
PAT F PG+C K+ P V P YSE TLPYSYN C A H+ EF FL + +D+
Sbjct: 721 PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIA-HTGTKEFNFLKCSVPLHSNEDM 779
Query: 781 LC 782
+C
Sbjct: 780 VC 781
>gi|14270508 protocadherin gamma subfamily B, 7 isoform 2 precursor
[Homo sapiens]
Length = 808
Score = 975 bits (2520), Expect = 0.0
Identities = 505/805 (62%), Positives = 598/805 (74%)
Query: 1 MGNSSGWRGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD 60
MG S R AG R++LF LL L L EPIRY+IPEEL +GS+VGNLAKDLG V D
Sbjct: 1 MGGSCAQRRRAGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLD 60
Query: 61 LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT 120
+ R LRV AEK F+V ++G+LLV DRIDRE+IC ++ C L+ E V E PLN FHV
Sbjct: 61 VSARELRVSAEKLHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVI 120
Query: 121 VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL 180
V+I+D+ND+ P F ++ LEISE G LESA+DPD+ +NSL +Y LSP+ +FSL
Sbjct: 121 VVIEDVNDHAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSL 180
Query: 181 IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP 240
++K+N DG +YPELVL+ LDRE Q HHLVLTA+DGG+P RS T QIR++V DANDNPP
Sbjct: 181 VEKDNPDGGKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPP 240
Query: 241 VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE 300
VF+QD+YRV++ E++P G+S+L+V A D DEGIN+EI Y+F + + + +F LD TG
Sbjct: 241 VFSQDVYRVSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKAQHVFSLDYTTGN 300
Query: 301 LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA 360
+ T LDFEE + YTI +EAKD G + CKV +++ DENDN+PEI + S S I ED+
Sbjct: 301 ILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDS 360
Query: 361 ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV 420
G VAL KT D DSG NGE+ C L PFKI + N Y+LVTD ALDREQ PEYNV
Sbjct: 361 PPGVVVALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNV 420
Query: 421 TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD 480
TI ATD+G PPLSSSKTITLHI DVNDN PVF Q++Y VHV ENN PGASIA V ASDPD
Sbjct: 421 TIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPD 480
Query: 481 LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP 540
G NG VSY ++ASDLE R LSSYVSVSA+SGVVFAQRAFDHEQLR FELTLQARDQGSP
Sbjct: 481 FGLNGRVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSP 540
Query: 541 TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY 600
LSANVSLRVLV DRNDNAP VLYPALGP+GSALFD VPR+A+PGYLVTKVVAVDADSG+
Sbjct: 541 ALSANVSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGH 600
Query: 601 NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML 660
NAWLSYH+VQASEPGLFSLGLRTGEVR R LGD+++ RQRLLV VRDGGQ PLSAT L
Sbjct: 601 NAWLSYHVVQASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATL 660
Query: 661 HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR 720
HL+FADSLQE+ PD SD PTPSD QAE+QF+LVVALALISVLFLLAVILAI+LRLR S
Sbjct: 661 HLVFADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFS 720
Query: 721 PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL 780
P F+ +C K+ P P YSE TLPY+YN C N EF F A QD
Sbjct: 721 PTAGDCFESVLCSKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDN 780
Query: 781 LCDEASWFESNDNPEMPSNSGNLQK 805
L ++ S P + ++ L++
Sbjct: 781 LNKDSMLLASILTPSVEADKKILKQ 805
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 922 bits (2384), Expect = 0.0
Identities = 495/931 (53%), Positives = 642/931 (68%), Gaps = 29/931 (3%)
Query: 16 MLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVI--AEKK 73
+L LL L + IRY++PEEL++GS VG++++DLG +L R +R+I +
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTF 133
F ++P +G+L+ + RIDREE+C C L +++ E + + V V ++DINDN P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 SQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPE 193
++ E++ISE A T F L A DPD+G NSLQ Y LSP+ HFSLI + DGS+YPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAE 253
LVLK LDREE+ HHLVLTA DGG+P R+ T +IRV+V DANDN P F Q YR +V E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERD 313
NL G+ +L V A D DEG+NAE+ Y+F + + Q+FKLD +G ++TIGELD EE
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 314 SYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
Y + V+A D ++A KV I + D NDNAPE+ L S + + E++ GT +AL+ +D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
DS NG+++C ++GN PFK+ + N Y LVTD LDREQ+P YN+T+TATD+G PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
+ I+L++ D NDN PVF QASY+ ++ ENNP G S+ V A DPD N ++Y +
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 494 SDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVD 553
+ ++ LSSYVS+++ +GV++A +FD+EQ R ++ + ARD G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASE 613
D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQP 673
PGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + ADS+ ++
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 674 DLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRLRCSSR----PATEGYF- 727
DL +P++ + ++L +LVVA+A +S +FL VIL ++LRLR + A+ G
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGLT 733
Query: 728 -QPGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCD 783
P F V GV L TYS S ++++ L N A D+L
Sbjct: 734 GAPASHFVGVDGVQAFLQTYSHE----------VSLTTDSRKSHLIFPQPNYA--DMLVS 781
Query: 784 EASWFES-----NDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 838
+ S+ +S + + +S L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 782 QESFEKSEPLLLSGDSVFSKDSHGLIEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 841
Query: 839 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 898
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 842 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 901
Query: 899 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 902 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 912 bits (2358), Expect = 0.0
Identities = 495/933 (53%), Positives = 627/933 (67%), Gaps = 30/933 (3%)
Query: 14 RRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK 73
R ML L LL + + I Y++PEE D+GS VGN+AKDLG +L +R+++ +
Sbjct: 12 RLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGR 71
Query: 74 F--FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPP 131
F ++P +G+L+ + RIDREE+C + C++ F ++ E + F V V I DINDN P
Sbjct: 72 MPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTP 131
Query: 132 TFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRY 191
F E +++E+ G +L QD DVG+NSLQ Y LS +PHFSL ++ DG ++
Sbjct: 132 QFQLEELEFKMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQH 191
Query: 192 PELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNV 251
PE+VL++PLDREE+ HHL+LTA DGGEP RS T +I + V DANDNPP FTQ Y +NV
Sbjct: 192 PEMVLQSPLDREEEAVHHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINV 251
Query: 252 AENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEE 311
EN+P G+ +L V A D DEG N E+ Y+F N+ V Q+F+LDS TGE++ LDFEE
Sbjct: 252 PENVPLGTQLLMVNATDPDEGANGEVTYSFHNVDHRVAQIFRLDSYTGEISNKEPLDFEE 311
Query: 312 RDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKT 371
Y++ V+A+DG A KV I + D NDNAPE+T+ S + + E+ GT +ALI
Sbjct: 312 YKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISV 371
Query: 372 HDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPP 431
HD DSG NG C + GN PFK+ + N YRLVT+ LDRE I YN+TITA D+G P
Sbjct: 372 HDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPA 431
Query: 432 LSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYI 491
LS+ I+L + D+NDN PVFHQ SY+ ++ ENNP GASI VRA D D N ++Y +
Sbjct: 432 LSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSL 491
Query: 492 VASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVL 551
+ ++ LS+Y+S+++ +GV++A R+FD+EQ R +L + ARD G P LS+NVSL +
Sbjct: 492 IEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLF 551
Query: 552 VDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQA 611
+ D+NDNAP +LYPAL +GS ++ P SAEPGYLVTKVVAVD DSG NAWLSY +++A
Sbjct: 552 LLDQNDNAPEILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 611
Query: 612 SEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEI 671
SEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + AD + +I
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDI 671
Query: 672 QPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR----PATEGY 726
DL S P+ ++L +LVVA A +S +FL VI+ ++ RLR + A+ G
Sbjct: 672 LADLGSLEPSAKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGG 731
Query: 727 F--QPGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLN-----IKAENAA 776
PG F V GV L TYS + + A S S+ F N I E+
Sbjct: 732 LASMPGSHFVGVDGVRAFLQTYS-----HEVSLTADSRKSHLIFPQPNYADTLISQESCE 786
Query: 777 PQDLLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 836
+ L S E P +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 787 KKGFLSAPQSLLEDKKEP--------FSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 838
Query: 837 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 896
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 839 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 898
Query: 897 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 899 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 910 bits (2352), Expect = 0.0
Identities = 497/934 (53%), Positives = 631/934 (67%), Gaps = 19/934 (2%)
Query: 8 RGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLR 67
R P ++L L LL L + IRY+IPEEL++GS VGN+ KDLG +L +R
Sbjct: 6 RHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVR 65
Query: 68 VIAEKKF--FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQD 125
+++ + F+++P NG+L+ + RIDREE+C + C++ F ++ E LN + V V I D
Sbjct: 66 IVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVD 125
Query: 126 INDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKEN 185
INDN P F + E++I E A + F L DPDVG+NSLQ + LS + HFS+ +
Sbjct: 126 INDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSE 185
Query: 186 LDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQD 245
G +YPELVL+ LDRE + + LVLTA+DGG+P RS QI V V D NDN P+FTQ
Sbjct: 186 AHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQP 245
Query: 246 MYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIG 305
+YRV+V ENLP G+ VL V A D DEG++ E+ Y+F+ I +++ Q+F L+ TGE++T
Sbjct: 246 VYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSA 305
Query: 306 ELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTA 365
LD+E+ Y +GVEA+DG KV I I D NDN PE+ + S S+ I E A GT
Sbjct: 306 NLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTV 365
Query: 366 VALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITAT 425
+AL + D DSG NG + C + + PF++ + N YRLVT+ ALDRE++ YN+T+TAT
Sbjct: 366 IALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTAT 425
Query: 426 DKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNG 485
DKG PPLS+ I+L++ D NDN P F +SY+V+V ENNP GASI V A DPD+ N
Sbjct: 426 DKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNA 485
Query: 486 LVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSAN 545
VSY + L+ LSSYVS+++ +G+++A R+FD+EQLR +L + A D G P LS+N
Sbjct: 486 QVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSN 545
Query: 546 VSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLS 605
VSL + V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLS
Sbjct: 546 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLS 605
Query: 606 YHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFA 665
Y +++ASEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + A
Sbjct: 606 YRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 665
Query: 666 DSLQEIQPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRL----RCSSR 720
D + +I DL S P+ ++L +LVVA+A +S +FL VI+ ++LRL +
Sbjct: 666 DRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQRWHKSRLL 725
Query: 721 PATEGYF--QPGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENA 775
A+ G PG F V GV L TYS + + A S S+ F N A+
Sbjct: 726 QASGGGLASMPGSHFVGVEGVRAFLQTYS-----HEVSLTADSRKSHLIFPQPNY-ADTL 779
Query: 776 APQDLLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 835
Q+ + D E LQ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTW
Sbjct: 780 INQESYEKSEPLLITQDLLETKGEPRQLQ-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 838
Query: 836 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 895
PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP
Sbjct: 839 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 898
Query: 896 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 899 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 906 bits (2342), Expect = 0.0
Identities = 490/934 (52%), Positives = 634/934 (67%), Gaps = 31/934 (3%)
Query: 14 RRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK 73
R +L LL +L + + IRY++PEE ++G +VGN++KDL +L R +R+++ +
Sbjct: 12 RLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGR 71
Query: 74 --FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPP 131
F+++P +G L+ + RIDREE+C + C++ F+++ E + + + + + DIND+ P
Sbjct: 72 TQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAP 131
Query: 132 TFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRY 191
F E++I+E+A+ GA + L A DPDVGVNSLQ Y LSP+ HFSL + +G+
Sbjct: 132 KFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAIN 191
Query: 192 PELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNV 251
PELVL+ LDREE HHLVLTA DGGEP RS T +I V V D NDN PVF Q +YRV V
Sbjct: 192 PELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKV 251
Query: 252 AENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEE 311
EN+P G+ +L A D+DEGIN ++ Y F I ++ LF+L+ TGE++T LD+EE
Sbjct: 252 LENVPPGTWLLTATASDLDEGINGKVAYKFWKINEKQSLLFQLNENTGEISTAKSLDYEE 311
Query: 312 RDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKT 371
Y + ++A+DGG + KV I + D NDN PE+T+ S ++EDA GT + L
Sbjct: 312 CSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNA 371
Query: 372 HDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPP 431
HD DSG NG+++C ++ N F + ++ YRL+T LDRE+ EYN+T+TATD+G PP
Sbjct: 372 HDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPP 431
Query: 432 LSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYI 491
LS+ ITL + D+NDN P F QASY+V++ ENN G SI V A DPD N V Y +
Sbjct: 432 LSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSL 491
Query: 492 VASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVL 551
++ LS+YVS+++ +GV++A +FD+EQ R ++ + A D GSP LS+NVSLR+
Sbjct: 492 AEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLF 551
Query: 552 VDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQA 611
V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY + +A
Sbjct: 552 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKA 611
Query: 612 SEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEI 671
SEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + ADS+ +I
Sbjct: 612 SEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDI 671
Query: 672 QPDLSDRPTPSDPQA-ELQFHLVVALALISVLFLLAVILAISLRLR--CSS---RPATEG 725
DL P+D +A +L +LVVA+A++S +FL VI ++LRLR SS R ++G
Sbjct: 672 LADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRLRHWHSSHLLRATSDG 731
Query: 726 YF-QPGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLN-----IKAENAA 776
P F V GV L TYS+ ++ A S S+ F N I ++
Sbjct: 732 LAGVPTSHFVGVDGVRAFLQTYSQ-----EFSLTADSRKSHLIFPQPNYADTLISQQSCE 786
Query: 777 PQDLLCDEA-SWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 835
+ LC S F D P +P QAPPNTDWRFSQAQRPGTSGSQNGDDTGTW
Sbjct: 787 KNEPLCVSVDSKFPIEDTPLVP--------QAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 838
Query: 836 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 895
PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP
Sbjct: 839 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 898
Query: 896 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 899 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 904 bits (2337), Expect = 0.0
Identities = 488/941 (51%), Positives = 644/941 (68%), Gaps = 31/941 (3%)
Query: 8 RGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLR 67
RG + +L L L + IRY++PEE ++GS VGN++KDLG +L R +R
Sbjct: 7 RGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVR 66
Query: 68 VIAEKK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQD 125
+++ K F V+P +G+L+ + RIDREE+C S+C L E++ E L + V V I D
Sbjct: 67 IVSRGKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIID 126
Query: 126 INDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKEN 185
INDN P+F ++ E+++SE A+ GA FAL +A+DPDVGVNSLQ Y LSP+ +FSL +
Sbjct: 127 INDNAPSFQEDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGR 186
Query: 186 LDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQD 245
DG++ PELVL+ LDRE++ H L+LTA+DGG+P R IRV+V D ND+ P+FTQ
Sbjct: 187 TDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQS 246
Query: 246 MYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIG 305
+YRV+V EN+ +G+ VL V A D DEGIN E++Y+F N+ + ++F+LDS+TGE+ G
Sbjct: 247 VYRVSVPENISSGTRVLMVNATDPDEGINGEVMYSFRNMESKASEIFQLDSQTGEVQVRG 306
Query: 306 ELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTA 365
LDFE+ Y + ++ +DGG + I + D NDNAPEIT+ S I E++ GT
Sbjct: 307 SLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTV 366
Query: 366 VALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITAT 425
+AL+ D DSG NG++ C + + PFK+ + N Y+L+T LDRE + YN+T+TAT
Sbjct: 367 IALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTAT 426
Query: 426 DKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNG 485
D+G+PPLS+ + L++ D NDN PVF +SY+ ++ ENNP GASI V A DPD N
Sbjct: 427 DQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNA 486
Query: 486 LVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSAN 545
LV+Y + ++ LSSYVS+++ +GV++A ++FD+EQ R EL + ARD G P LS+N
Sbjct: 487 LVTYSLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSN 546
Query: 546 VSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLS 605
VSL + V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLS
Sbjct: 547 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLS 606
Query: 606 YHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFA 665
Y +++ASEPGLF++G TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + A
Sbjct: 607 YRLLKASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 666
Query: 666 DSLQEIQPDLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRL----RCSSR 720
DS+ E+ DL + ++ + ++L +LVVA+A +S +FL+ VI+ ++LRL +
Sbjct: 667 DSIPEVLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLL 726
Query: 721 PATEGYF--QPGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLN-----I 770
A+EG P F V GV L TYS + + A S S+ F N I
Sbjct: 727 QASEGGLAGMPTSHFVGVDGVQAFLQTYS-----HEVSLIADSQKSHLIFPQPNYGDTLI 781
Query: 771 KAENAAPQD--LLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQN 828
E+ + L+ ++++ +P +QAPPNTDWRFSQAQRPGTSGSQN
Sbjct: 782 SQESCEKSEPLLIAEDSAIILGKCDP-------TSNQQAPPNTDWRFSQAQRPGTSGSQN 834
Query: 829 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 888
GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY
Sbjct: 835 GDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDY 894
Query: 889 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 895 RQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 904 bits (2336), Expect = 0.0
Identities = 487/930 (52%), Positives = 637/930 (68%), Gaps = 19/930 (2%)
Query: 12 GQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAE 71
G+ L LL L + S IRY++ EELD+GS VGN+A DLG +L R +R+++
Sbjct: 10 GRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSR 69
Query: 72 KK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDN 129
+ F+++P++G+L+ ++RIDREE+C + C+++ ++ E L F V + I+DINDN
Sbjct: 70 GRTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDN 129
Query: 130 PPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGS 189
P F E++I EL + G F +++A DPDVG+NSLQ Y LSP+ +FSL +G+
Sbjct: 130 APNFPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGA 189
Query: 190 RYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRV 249
+YPELVL+ LDRE++ H LVL A DGG+P S I+VIV DANDNPP+FTQ YRV
Sbjct: 190 KYPELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRV 249
Query: 250 NVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDF 309
+V EN+P G+ +L V A D DEG NA++ Y + ++ ++F L+S +GE++ + LD+
Sbjct: 250 SVWENVPVGTRLLTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDY 309
Query: 310 EERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALI 369
E+ Y I +EA+DG + K+ + + D NDNAPEIT+ S + + E+ +G +ALI
Sbjct: 310 EDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALI 369
Query: 370 KTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGN 429
HD DSG NG++ + GN PFK+ + YRLVT +LDREQI EYN+++ A+D G+
Sbjct: 370 DVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGS 429
Query: 430 PPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSY 489
PPLS+ ITLH++D+NDN P F SY+ ++ ENNP GASI V A DPD N ++Y
Sbjct: 430 PPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITY 489
Query: 490 YIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLR 549
+ L+ LSS+VS+++ +GV++A R+FD+EQ R +L + A D G+P LS+NVSL
Sbjct: 490 ALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLN 549
Query: 550 VLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIV 609
+ V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY ++
Sbjct: 550 LFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLL 609
Query: 610 QASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQ 669
+ASEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + AD +
Sbjct: 610 KASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIP 669
Query: 670 EIQPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR----PATE 724
+I DL S P+ ++L +LVVA+A +S +FL VI+ ++LRLR + A+
Sbjct: 670 DILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQASG 729
Query: 725 GYF--QPGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQD 779
G PG F GV L TYS + + A S S+ F N A+ Q+
Sbjct: 730 GGLASTPGSHFVGADGVRAFLQTYS-----HEVSLTADSRKSHLIFPQPNY-ADTLISQE 783
Query: 780 LLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 839
+ D EM +S NL +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 784 SCEKSEPLLITQDLLEMKGDS-NLLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 842
Query: 840 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 899
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 843 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 902
Query: 900 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 902 bits (2331), Expect = 0.0
Identities = 483/932 (51%), Positives = 625/932 (67%), Gaps = 20/932 (2%)
Query: 10 PAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVI 69
P R + LL +L ++ +E I Y++ EE + GS+VGN+AKDLG +L R +R++
Sbjct: 8 PDHTRLLQICLLLGVLVEIRAEQILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIV 67
Query: 70 AEKK--FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDIN 127
+ + F ++P +G L+ + RIDREE+C + CV E++ E + V V I D+N
Sbjct: 68 SRGRTQLFALNPRSGTLVTAGRIDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVN 127
Query: 128 DNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLD 187
DNPP+F E++++E GA F L A DPDVGVNSLQ Y L+ + +FSL + D
Sbjct: 128 DNPPSFGTEQREIKVAENENPGARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGAD 187
Query: 188 GSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMY 247
G +YPELVL+ LDREE+ HHLVLTA DGG+P RS T +I +I+ D NDN PVFTQ Y
Sbjct: 188 GIKYPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEY 247
Query: 248 RVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGEL 307
V+V EN+P G+ +L V A D DEG N ++ Y+F + ++ QLF+L+S +G++T +G L
Sbjct: 248 HVSVRENVPVGTRLLTVKATDPDEGANGDVTYSFRKVRDKISQLFQLNSLSGDITILGGL 307
Query: 308 DFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVA 367
D+E+ Y I VEA DG A KV + + DENDNAPE+T+ S + +QE + GT +A
Sbjct: 308 DYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIA 367
Query: 368 LIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDK 427
L HD DSG NG + C + N PF + + N YRL+T LDRE++ EYN+T+TATD+
Sbjct: 368 LFNVHDSDSGGNGLVTCSIPDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQ 427
Query: 428 GNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLV 487
G PPLS+ I+L ++D+NDN P F ASY+ ++ ENNP GASI + A DPD G N +
Sbjct: 428 GTPPLSTETHISLQVMDINDNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARI 487
Query: 488 SYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVS 547
+Y + + LSSYVS+++ +G+++A +FD+EQ R +L + A D G P LS+NVS
Sbjct: 488 TYSLAEDTFQGAPLSSYVSINSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVS 547
Query: 548 LRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYH 607
L + V D+NDN P +LYP +GS ++ PRSA+ GYLVTKVVAVD DSG NAWLSY
Sbjct: 548 LSLFVLDQNDNVPEILYPTFPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYS 607
Query: 608 IVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADS 667
++++SEPGLF++GL TGEVRTAR L DR+A +QRL+V V+D GQ PLSATV L + ADS
Sbjct: 608 LLKSSEPGLFAVGLHTGEVRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADS 667
Query: 668 LQEIQPDLSDRPTPSDP-QAELQFHLVVALALISVLFL--LAVILAISLRLRCSSRPA-T 723
+ ++ DL +DP + L +LVVA+A +S +FL + V+LA+ LR SR
Sbjct: 668 IPDVLADLGSLKPSADPDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHA 727
Query: 724 EGYFQPGV---CFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAP 777
EG GV F V GV L TYS + + + S + I E+
Sbjct: 728 EGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESCEK 787
Query: 778 QDLLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 837
+ L E+ +P NLQ QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 788 SEPLLITQDLLETKGDP-------NLQ-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 839
Query: 838 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 897
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 840 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 899
Query: 898 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 900 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 900 bits (2327), Expect = 0.0
Identities = 487/923 (52%), Positives = 615/923 (66%), Gaps = 14/923 (1%)
Query: 16 MLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK-- 73
+L LL L + S IRY++PEELD+GS VGN+AKDLG +L R +R+++ +
Sbjct: 14 LLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRTQ 73
Query: 74 FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTF 133
F ++P +G+L+ + RIDREE+C + CV+ F ++ E + + V V I DINDN P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPRF 133
Query: 134 SQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPE 193
+++++E A G L A+D DVGVNSL+ Y LS + HFSL DG +YPE
Sbjct: 134 RDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYPE 193
Query: 194 LVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAE 253
LVL+ PLDRE++ H L+LTA+DGG+P S TT IRV V DANDN P+FT Y V+V E
Sbjct: 194 LVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPE 253
Query: 254 NLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERD 313
N+P G+ +L + A D DEGIN ++ Y+F N +++ + F+LDS GE++T+ LD+EE
Sbjct: 254 NIPVGTRLLMLTATDPDEGINGKLTYSFRNEEEKISETFQLDSNLGEISTLQSLDYEESR 313
Query: 314 SYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
Y + V A+DGG A KV + + D NDNAPE+ L S + I ED GT +AL HD
Sbjct: 314 FYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVHD 373
Query: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
DSG NGEI C + N PFK+ + N Y L+T LDRE+ +YN+T+T D G PPLS
Sbjct: 374 GDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPLS 433
Query: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
+ I L + DVNDN P F QASY+ V ENNP G SI V A DPD G N V+Y +
Sbjct: 434 TESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAE 493
Query: 494 SDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVD 553
+ LSSYVS+++ +GV++A R+FD+EQLR +L + A D G+P LS+NVSL + V
Sbjct: 494 DTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASE 613
D+NDN P +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQP 673
PGLF++GL TGEVRTAR L DR+A +Q L+V V D GQ PLSAT + + AD + +I
Sbjct: 614 PGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDILA 673
Query: 674 DLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRLR---CSSRPATEGYFQP 729
DL TP DP+ +L +LVVA+A +S +FL VI+ + LRLR S EG
Sbjct: 674 DLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSRLA 733
Query: 730 GV---CFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEAS 786
GV F V GV YS+ + S + F + + C+++
Sbjct: 734 GVPASHFVGVDGVRAFLQ----TYSHEVSLTADSRKSHLIFPQPNYADTLLSEESCEKSE 789
Query: 787 WFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 846
+D + +Q QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ
Sbjct: 790 PLLMSDKVDANKEERRVQ-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQ 848
Query: 847 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 906
AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG
Sbjct: 849 AMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAG 908
Query: 907 KRDGKAPAGGNGNKKKSGKKEKK 929
KRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 909 KRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 892 bits (2306), Expect = 0.0
Identities = 479/909 (52%), Positives = 613/909 (67%), Gaps = 19/909 (2%)
Query: 33 IRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK--FFTVSPENGNLLVSDRI 90
I Y+IPEEL++GS VGN++KDLG +L R +R+++ + F+++P +G+L+ + RI
Sbjct: 35 ISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRTQLFSLNPRSGSLITAGRI 94
Query: 91 DREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFSQNITELEISELALTGA 150
DREE+C + + CV+ F ++ E + F + + + DINDN P F +++I+E G
Sbjct: 95 DREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQAENLDVKINENVAAGM 154
Query: 151 TFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPELVLKAPLDREEQPHHHL 210
F L A DPDVGVNSLQ Y LSP+ HFSL + +G +YPELVL+ LDREE+ HHL
Sbjct: 155 RFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPELVLEHSLDREEEAIHHL 214
Query: 211 VLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAENLPAGSSVLKVMAIDMD 270
VLTA DGG+P RS T + V V DANDN PVFT YRV+V ENLP G+ +L V A D D
Sbjct: 215 VLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPENLPVGTQLLTVTATDRD 274
Query: 271 EGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERDSYTIGVEAKDGGHHTAY 330
EG N E+ Y+F + F+L+ TGE+ LD+EE Y I ++A+DGG + A
Sbjct: 275 EGANGEVTYSFRKLPDTQLLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGGAYLAT 334
Query: 331 CKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHDLDSGFNGEILCQLKGNF 390
KV I + D NDN+PE+T+ S + ED+ LGT VAL+ HDLDS NG++ C +
Sbjct: 335 AKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNVHDLDSEQNGQVTCSILAYL 394
Query: 391 PFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSSSKTITLHILDVNDNVP 450
PFK+ + + YRLV ALDREQ+ YN+T+TATD G+PPLS+ L + D+NDN P
Sbjct: 395 PFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPPLSTEAHFMLQVADINDNPP 454
Query: 451 VFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVASDLEPRELSSYVSVSAR 510
F Q SY ++ ENN GASI V A DPD N + Y + ++ LSSY+S+++
Sbjct: 455 TFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSLAEDTIQGVPLSSYISINSD 514
Query: 511 SGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDDRNDNAPLVLYPALGPE 570
+GV++A R+FD+EQ ++ + A D G P LS+NVSL + V D+NDNAP +LYPAL +
Sbjct: 515 TGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTD 574
Query: 571 GSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASEPGLFSLGLRTGEVRTAR 630
GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +++ASEPGLF++G TGEVRTAR
Sbjct: 575 GSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTAR 634
Query: 631 TLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPDLSDRPTPSDPQ-AELQ 689
L DR+A +Q L+V V+D GQ PLSATV L + ADS+ ++ DL +P++ + ++L
Sbjct: 635 ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLADLGSFESPANSETSDLT 694
Query: 690 FHLVVALALISVLFLLAVILAISLRLR---CSSRPATEGYFQPGVC---FKTVPGV---L 740
+LVVA+A +S +FL VI+ ++ RLR S G GV F V GV L
Sbjct: 695 LYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLTGVSGSHFVGVDGVRAFL 754
Query: 741 PTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEASWFESNDNPEMPSNS 800
TYS + + A S S+ F N A+ Q+ C++ D+ + P
Sbjct: 755 QTYS-----HEVSLTADSRKSHLIFPQPNY-ADTLISQE-SCEKNDPLSLLDDSKFPIED 807
Query: 801 GNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS 860
L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS
Sbjct: 808 TPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGS 867
Query: 861 STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK 920
STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK
Sbjct: 868 STLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNK 927
Query: 921 KKSGKKEKK 929
KKSGKKEKK
Sbjct: 928 KKSGKKEKK 936
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 884 bits (2285), Expect = 0.0
Identities = 488/931 (52%), Positives = 623/931 (66%), Gaps = 33/931 (3%)
Query: 20 FLLSLLD----QVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK-- 73
FLLS+L + + I Y++ EE D+GS VG++AKDLG +L R +R+I+ +
Sbjct: 14 FLLSILLGTPWEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQ 73
Query: 74 FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTF 133
F ++ +G+L+ + RIDREEIC + + C++ F ++ E +N + + V I DINDN P F
Sbjct: 74 LFALNQRSGSLVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRF 133
Query: 134 SQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPE 193
++I E G F L A DPDVG NSLQ Y LSP+ HFSL + D ++YPE
Sbjct: 134 LTEEINVKIMENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPE 193
Query: 194 LVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAE 253
LVL+ LDREE+ HHLVLTA DGG+P RS T I+V V D ND+ PVF+ Y+V V E
Sbjct: 194 LVLERVLDREEERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPE 253
Query: 254 NLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERD 313
N+P G+ +L V AID+DEG+N E+ Y+F I ++ ++F L+S TGE++T+ LD+EE
Sbjct: 254 NVPVGTRLLTVHAIDLDEGVNGEVTYSFRKITPKLPKMFHLNSLTGEISTLEGLDYEETA 313
Query: 314 SYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
Y + V+A+DG KV I + D NDNAPE+T+ S S I ED LGT +AL D
Sbjct: 314 FYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQD 373
Query: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
DSG NGE+ C + N PFK+ + N YRLVT LDRE + YN+T+ ATD G PPLS
Sbjct: 374 RDSGKNGEVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLS 433
Query: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
I + + D NDN P F +SY+V++AENNP GASI V A D D N ++Y +
Sbjct: 434 RETHIFMQVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAE 493
Query: 494 SDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVD 553
++ +SSYVS+++ +GV++A ++FD+EQLR +L + A D G P LS+N+SL + V
Sbjct: 494 DTIQGAPVSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVL 553
Query: 554 DRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASE 613
D+NDN P +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNPPEILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQP 673
PGLF++GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + ADS+ E+
Sbjct: 614 PGLFAVGLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLA 673
Query: 674 DL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR----PATEGYFQ 728
DL S P+ +L +LVVA+A +S +FL V++ ++LRLR + A+EG
Sbjct: 674 DLGSLEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGGLA 733
Query: 729 --PGVCFKTVPGV---LPTYSERTLPYSYNPCAASHSSNTEFKFLN-----IKAENAAPQ 778
P F + GV L TYS + + A S S+ F N I E+
Sbjct: 734 NVPTSHFVGMDGVQAFLQTYS-----HEVSLTADSRKSHLIFPQPNYVDMLISQESCEKN 788
Query: 779 DLLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 838
D L + E +N +PS +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 789 DSLLTSVDFQECKEN--LPS-----IQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 841
Query: 839 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 898
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 842 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 901
Query: 899 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 902 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 883 bits (2282), Expect = 0.0
Identities = 478/932 (51%), Positives = 617/932 (66%), Gaps = 19/932 (2%)
Query: 10 PAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVI 69
P ++ +L FLL+ L + + IRY++ EE+DRGS VGN+AKDLG L + +R++
Sbjct: 8 PHCRKLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIV 67
Query: 70 AE--KKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDIN 127
+ + F ++P +G+L+ ++RIDREE+C + + C+L F ++ E L + V V I DIN
Sbjct: 68 SRGRSQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDIN 127
Query: 128 DNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLD 187
DN P F EL+ISE G L++A D DVG N+LQ+Y L+P+ HFSL + D
Sbjct: 128 DNAPRFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGAD 187
Query: 188 GSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMY 247
G++YPELVL+ LDREE+ HHLVL A DGG+P S T++I V V DANDN PVFTQ Y
Sbjct: 188 GNKYPELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEY 247
Query: 248 RVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGEL 307
R+++ EN G+ +L V A D DEG A+++Y E ++F+L S +GELT I +L
Sbjct: 248 RISIPENTLVGTRILTVTATDADEGYYAQVVYFLEKSPGETSEVFELKSTSGELTIIKDL 307
Query: 308 DFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVA 367
D+E+ + I +EA+DG KV + + D NDNAPE + S + + ED+ GT +
Sbjct: 308 DYEDATFHEIDIEAQDGPGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIG 367
Query: 368 LIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDK 427
L HD DSG N C L + PFK+ + N YRLVT ALDREQ YN+T+TA D
Sbjct: 368 LFNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDG 427
Query: 428 GNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLV 487
GNP LS+ I L + D+NDN P F + SY+ ++ ENNP GAS+ V A DPD N V
Sbjct: 428 GNPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHV 487
Query: 488 SYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVS 547
+Y ++ LSSY+S+++ +GV++A R+FD+EQLR ++ + ARD G+P LS+NVS
Sbjct: 488 TYSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVS 547
Query: 548 LRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYH 607
L + V D+NDNAP +LYPA +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSYH
Sbjct: 548 LSLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYH 607
Query: 608 IVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADS 667
+++ASEPGLFS+GL TGEVRTAR L DR+A +Q L+V ++D GQ PLSATV L + AD
Sbjct: 608 LLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADR 667
Query: 668 LQEIQPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLR---------C 717
+ +I DL S P+ ++L +LVVA+A +S +FL VI+ ++ RLR
Sbjct: 668 IPDILADLGSLEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQA 727
Query: 718 SSRPATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAP 777
S T V V L TYS + + A S S+ F N A+
Sbjct: 728 SGGSLTGMQSSHFVGVDGVRAFLQTYS-----HEVSLTADSRKSHLIFPQPNY-ADTLIS 781
Query: 778 QDLLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 837
Q+ C++ + + + +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 782 QE-SCEKKDFLSAPQSLLEEEREETFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 840
Query: 838 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 897
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 841 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 900
Query: 898 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 873 bits (2256), Expect = 0.0
Identities = 477/931 (51%), Positives = 607/931 (65%), Gaps = 29/931 (3%)
Query: 16 MLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEKK-- 73
+L LL L ++ IRY++PEE D+GS VGN++KDLG L +R+++ +
Sbjct: 14 ILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQ 73
Query: 74 FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTF 133
F ++P +G+L+ + RIDREE+C + C++ + E F V + I DINDN P F
Sbjct: 74 LFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKF 133
Query: 134 SQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPE 193
E++I+E+A+ GA + L A DPDVGVNSLQ Y LSP+ HFSL + +G+ PE
Sbjct: 134 QVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPE 193
Query: 194 LVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAE 253
LVL+ LDREE+ HHLVLTA DGG+P RS T +I V V D NDN PVF +YRV V E
Sbjct: 194 LVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLE 253
Query: 254 NLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERD 313
N+P G+ +L V A D DEGIN ++ Y F I ++ LF+L+ TGE++ LD+EE
Sbjct: 254 NMPPGTRLLTVTASDPDEGINGKVAYKFRKINEKQTPLFQLNENTGEISIAKSLDYEECS 313
Query: 314 SYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
Y + ++A+D G K+ I + D NDN PE+ + S + E++ GT +A + HD
Sbjct: 314 FYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSVHD 373
Query: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
DSG NG+++C + N PFK+ + N YRLVT LDRE + YN+T+ A+D G PPLS
Sbjct: 374 QDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNITVMASDLGTPPLS 433
Query: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
+ I LH+ D+NDN P F ASY+ ++ ENN GASI + A DPD N V+Y +
Sbjct: 434 TETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYSVTE 493
Query: 494 SDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVD 553
L+ LSSY+S+++ +GV++A ++FD+EQ+R +L + A D G P LS+N+SL + V
Sbjct: 494 DTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVL 553
Query: 554 DRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASE 613
D+NDNAP +LYPAL +GS ++ PRSAE GYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQP 673
PGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + ADS+ E+
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLT 673
Query: 674 DLSDRPTPSDP-QAELQFHLVVALALISVLFLLAVILAISLRLR---CSSRPATEGYFQP 729
+L DP + L +LVVA+A IS +FL V + + LRLR S G
Sbjct: 674 ELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWHKSRLLQDSGGRLV 733
Query: 730 GVCFKTVPGV------LPTYSERTLPYSYNPCAASHSSNTEFKFLN-----IKAENAAPQ 778
GV GV L TYS+ + A S S+ F N I E
Sbjct: 734 GVPASHFVGVEEVQAFLQTYSQEV-----SLTADSRKSHLIFPQPNYADMLISQEGCEKN 788
Query: 779 DLLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 838
D L + E N + +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
Sbjct: 789 DSLLTSVDFHEY-------KNEADHGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN 841
Query: 839 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 898
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
Sbjct: 842 QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN 901
Query: 899 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 902 ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 809 bits (2089), Expect = 0.0
Identities = 457/927 (49%), Positives = 588/927 (63%), Gaps = 35/927 (3%)
Query: 29 LSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEK--KFFTVSPENGNLLV 86
+S +RY++ EE + G+LVGN+A+DLG + DL +R L++ +E+ ++F++S +G L V
Sbjct: 27 VSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAV 86
Query: 87 SDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFSQNITELEISELA 146
+ +IDRE +CG ++C+L ++V E PL V V I D+NDN P+F+ E+ ISE A
Sbjct: 87 NQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESA 146
Query: 147 LTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPELVLKAPLDREEQP 206
+GA F L+SAQDPDVG N++ Y LSP+ HFSL K DG +PELVL+ LDRE Q
Sbjct: 147 ASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQA 206
Query: 207 HHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAENLPAGSSVLKVMA 266
H LVLTAVDGG P+RS TT I VIV D NDN P F + RV + EN P G+ +L++ A
Sbjct: 207 RHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNA 266
Query: 267 IDMDEGINAEIIYAFINIGKE-VRQLFKLDSKTGELTTIGELDFEERDSYTIGVEAKDGG 325
D DEG N ++ Y+F + E VR LF LD +G + +G +DFEE Y I A+D G
Sbjct: 267 TDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQG 326
Query: 326 HHT--AYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHDLDSGFNGEIL 383
+C +Q+D+ D NDNAPE+ LAS + + E +GT V L D DSG NGE+
Sbjct: 327 QPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVS 386
Query: 384 CQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSSSKTITLHIL 443
+ + PF+I + ++N Y L+T LDRE Y + + A+D G+P L TI L+I
Sbjct: 387 LDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLNIS 445
Query: 444 DVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVASDLEPRELSS 503
DVNDN P F+Q YT ++ EN PPG+ + V ASDPD G N ++Y IV + ++ SS
Sbjct: 446 DVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPASS 505
Query: 504 YVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDDRNDNAPLVL 563
+V V+ G +FAQR FD+E L+ ++ + RD GSP L AN SL V V D NDNAP VL
Sbjct: 506 FVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPAVL 565
Query: 564 YPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIV-QASEPGLFSLGLR 622
+P E SA +PRSA PG LVTKV AVDAD+G+NAWLSY ++ Q++ PGLF +
Sbjct: 566 HPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTH 624
Query: 623 TGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPDLSDRPTPS 682
TGEVRTAR L + ++ Q+++V VRD G LS+T + L+ D E P SD
Sbjct: 625 TGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIHP 684
Query: 683 DPQAELQFHLVVALALISVLFLLAVILAISLRLR-----------CSSR---PATEGYFQ 728
+++L +L+VALA +S+L L+ + L+ C R P+ + Y Q
Sbjct: 685 PERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRRQDSPSPDFYKQ 744
Query: 729 PGVCFKTVPGVLPTYSERTL------PYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLC 782
+ Y E TL + Y C + S ++F FL + L
Sbjct: 745 SSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALE 804
Query: 783 DEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 842
+A SN E +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT
Sbjct: 805 PDAIRSRSNTLRER-------SQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 857
Query: 843 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 902
EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT
Sbjct: 858 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 917
Query: 903 NAAGKRDGKAPAGGNGNKKKSGKKEKK 929
NAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 918 NAAGKRDGKAPAGGNGNKKKSGKKEKK 944
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 786 bits (2031), Expect = 0.0
Identities = 445/936 (47%), Positives = 578/936 (61%), Gaps = 40/936 (4%)
Query: 19 LFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAE--KKFFT 76
LFL L V + IRY +PEE G+ VGN+A+D L R L+V E ++ F
Sbjct: 18 LFLFYHLGYVCGQ-IRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
Query: 77 VSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFSQN 136
V ++G LL+ + IDRE +CG ++C++ E V E PL + V I D+ND+ P F +
Sbjct: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
Query: 137 ITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPELVL 196
+LEI E A G F LE AQD DVG NS+ Y LS + HF+L K+ DGS PEL+L
Sbjct: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
Query: 197 KAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAENLP 256
+ PLDRE+Q + LVLTAVDGG P RS T ++RV V D NDN P F Q YR++V E+ P
Sbjct: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
Query: 257 AGSSVLKVMAIDMDEGINAEIIYAFI-NIGKEVRQLFKLDSKTGELTTIGELDFEERDSY 315
AG ++++ A D D G + + + F + VR LF L TG+LT +G LDFE + Y
Sbjct: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYY 316
Query: 316 TIGVEAKDGGHHTA--YCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
V A+DGG +C +++D+ D NDNAP IT+ SE + E AE GT VALI D
Sbjct: 317 EFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQD 376
Query: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
DSG NG++ ++ + PF + +N + LVT G LDRE Y++ +TA+D GNPPLS
Sbjct: 377 PDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLS 436
Query: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
+ +TI L+I DVNDN P F Q S+ V V ENN PG + + ASDPD G N L+SY +
Sbjct: 437 THRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSL-- 494
Query: 494 SDLEPRE----LSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLR 549
LEPR SS++S++ ++G V A R+FD+EQ + + +QARD+G+P LS+ V++R
Sbjct: 495 --LEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVR 552
Query: 550 VLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIV 609
+ V D NDNAP VL P P GS +P S G+L+TKV AVD DSGYNAW+SY ++
Sbjct: 553 LFVLDLNDNAPAVLRPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLL 611
Query: 610 QASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQ 669
+A +P LF++ GEVRTA + + Q+L++ V+D G PLS +V L + +
Sbjct: 612 EAPDPSLFAVSRYAGEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTH 670
Query: 670 EIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYFQP 729
+ PDL + P + ++ L +L V+L I + + + +S LR ++ T
Sbjct: 671 PVVPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVT------ 724
Query: 730 GVCFKTVPGVLPTYSERT--LPYSYNPCAASHSSNTEFKFLNI--KAENAAPQDLLCDEA 785
CF T S R LP S S+ KF+++ + P +
Sbjct: 725 --CFPAGTCACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRS 782
Query: 786 SWFESNDNPEMPSNSGNLQ------------KQAPPNTDWRFSQAQRPGTSGSQNGDDTG 833
F +P P ++ +QAPPNTDWRFSQAQRPGTSGSQNGDDTG
Sbjct: 783 DSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTG 842
Query: 834 TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVY 893
TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVY
Sbjct: 843 TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVY 902
Query: 894 IPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
IPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 IPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
>gi|14196457 protocadherin gamma subfamily A, 12 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 679 bits (1753), Expect = 0.0
Identities = 350/704 (49%), Positives = 483/704 (68%), Gaps = 3/704 (0%)
Query: 16 MLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVI--AEKK 73
+L LL L + IRY++PEEL++GS VG++++DLG +L R +R+I +
Sbjct: 14 VLLGILLGTLWETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQ 73
Query: 74 FFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTF 133
F ++P +G+L+ + RIDREE+C C L +++ E + + V V ++DINDN P F
Sbjct: 74 LFALNPRSGSLVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYF 133
Query: 134 SQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPE 193
++ E++ISE A T F L A DPD+G NSLQ Y LSP+ HFSLI + DGS+YPE
Sbjct: 134 RESELEIKISENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPE 193
Query: 194 LVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAE 253
LVLK LDREE+ HHLVLTA DGG+P R+ T +IRV+V DANDN P F Q YR +V E
Sbjct: 194 LVLKRALDREEKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPE 253
Query: 254 NLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIGELDFEERD 313
NL G+ +L V A D DEG+NAE+ Y+F + + Q+FKLD +G ++TIGELD EE
Sbjct: 254 NLALGTQLLVVNATDPDEGVNAEVRYSFRYVDDKAAQVFKLDCNSGTISTIGELDHEESG 313
Query: 314 SYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
Y + V+A D ++A KV I + D NDNAPE+ L S + + E++ GT +AL+ +D
Sbjct: 314 FYQMEVQAMDNAGYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVND 373
Query: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
DS NG+++C ++GN PFK+ + N Y LVTD LDREQ+P YN+T+TATD+G PPLS
Sbjct: 374 QDSEENGQVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLS 433
Query: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
+ I+L++ D NDN PVF QASY+ ++ ENNP G S+ V A DPD N ++Y +
Sbjct: 434 TETHISLNVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAE 493
Query: 494 SDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVD 553
+ ++ LSSYVS+++ +GV++A +FD+EQ R ++ + ARD G P LS+NVSL + V
Sbjct: 494 NTIQGASLSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVL 553
Query: 554 DRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIVQASE 613
D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLSY +++ASE
Sbjct: 554 DQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASE 613
Query: 614 PGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQP 673
PGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + ADS+ ++
Sbjct: 614 PGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLA 673
Query: 674 DLSDRPTPSDPQ-AELQFHLVVALALISVLFLLAVILAISLRLR 716
DL +P++ + ++L +LVVA+A +S +FL VIL ++LRLR
Sbjct: 674 DLGSLESPANSETSDLTLYLVVAVAAVSCVFLAFVILLLALRLR 717
>gi|14196474 protocadherin gamma subfamily A, 6 isoform 2 precursor
[Homo sapiens]
Length = 818
Score = 666 bits (1719), Expect = 0.0
Identities = 350/712 (49%), Positives = 477/712 (66%), Gaps = 3/712 (0%)
Query: 8 RGPAGQRRMLFLFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLR 67
R P ++L L LL L + IRY+IPEEL++GS VGN+ KDLG +L +R
Sbjct: 6 RHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVR 65
Query: 68 VIAEKKF--FTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQD 125
+++ + F+++P NG+L+ + RIDREE+C + C++ F ++ E LN + V V I D
Sbjct: 66 IVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVD 125
Query: 126 INDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKEN 185
INDN P F + E++I E A + F L DPDVG+NSLQ + LS + HFS+ +
Sbjct: 126 INDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSE 185
Query: 186 LDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQD 245
G +YPELVL+ LDRE + + LVLTA+DGG+P RS QI V V D NDN P+FTQ
Sbjct: 186 AHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQP 245
Query: 246 MYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGELTTIG 305
+YRV+V ENLP G+ VL V A D DEG++ E+ Y+F+ I +++ Q+F L+ TGE++T
Sbjct: 246 VYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKITEKISQIFCLNVLTGEISTSA 305
Query: 306 ELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDAELGTA 365
LD+E+ Y +GVEA+DG KV I I D NDN PE+ + S S+ I E A GT
Sbjct: 306 NLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTV 365
Query: 366 VALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITAT 425
+AL + D DSG NG + C + + PF++ + N YRLVT+ ALDRE++ YN+T+TAT
Sbjct: 366 IALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTAT 425
Query: 426 DKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNG 485
DKG PPLS+ I+L++ D NDN P F +SY+V+V ENNP GASI V A DPD+ N
Sbjct: 426 DKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNA 485
Query: 486 LVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSAN 545
VSY + L+ LSSYVS+++ +G+++A R+FD+EQLR +L + A D G P LS+N
Sbjct: 486 QVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSN 545
Query: 546 VSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLS 605
VSL + V D+NDNAP +LYPAL +GS ++ PRSAEPGYLVTKVVAVD DSG NAWLS
Sbjct: 546 VSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLS 605
Query: 606 YHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFA 665
Y +++ASEPGLFS+GL TGEVRTAR L DR+A +Q L+V V+D GQ PLSATV L + A
Sbjct: 606 YRLLKASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVA 665
Query: 666 DSLQEIQPDL-SDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLR 716
D + +I DL S P+ ++L +LVVA+A +S +FL VI+ ++LRL+
Sbjct: 666 DRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLQ 717
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,429,001
Number of Sequences: 37866
Number of extensions: 1674104
Number of successful extensions: 10218
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 3264
Number of HSP's gapped (non-prelim): 646
length of query: 929
length of database: 18,247,518
effective HSP length: 112
effective length of query: 817
effective length of database: 14,006,526
effective search space: 11443331742
effective search space used: 11443331742
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.