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Search of human proteins with 11128025
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11128025 protocadherin gamma subfamily C, 4 isoform 1
precursor [Homo sapiens]
(938 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 1878 0.0
gi|14277682 protocadherin gamma subfamily C, 4 isoform 2 precurs... 1626 0.0
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 926 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 832 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 830 0.0
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs... 828 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 825 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 819 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 816 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 813 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 811 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 805 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 805 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 805 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 805 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 803 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 803 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 801 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 801 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 796 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 795 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 793 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 786 0.0
gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precurs... 678 0.0
gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precurso... 627 e-179
gi|14165431 protocadherin alpha subfamily C, 2 isoform 2 precurs... 607 e-173
gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens] 600 e-171
gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 592 e-169
gi|14717401 protocadherin alpha subfamily C, 1 isoform 1 precurs... 590 e-168
gi|14277677 protocadherin gamma subfamily C, 3 isoform 2 precurs... 588 e-167
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 1878 bits (4866), Expect = 0.0
Identities = 938/938 (100%), Positives = 938/938 (100%)
Query: 1 MLRKVRSWTEIWRWATLLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLS 60
MLRKVRSWTEIWRWATLLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLS
Sbjct: 1 MLRKVRSWTEIWRWATLLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLS 60
Query: 61 ARRLQVAGEVNQRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAE 120
ARRLQVAGEVNQRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAE
Sbjct: 61 ARRLQVAGEVNQRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAE 120
Query: 121 VEIVDVNDHAPRFPRQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFAL 180
VEIVDVNDHAPRFPRQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFAL
Sbjct: 121 VEIVDVNDHAPRFPRQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFAL 180
Query: 181 DVKKRSDGSLVPELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAP 240
DVKKRSDGSLVPELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAP
Sbjct: 181 DVKKRSDGSLVPELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAP 240
Query: 241 AFQQSSYRISVLESAPAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTG 300
AFQQSSYRISVLESAPAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTG
Sbjct: 241 AFQQSSYRISVLESAPAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTG 300
Query: 301 KLTLLGPLDFESENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLP 360
KLTLLGPLDFESENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLP
Sbjct: 301 KLTLLGPLDFESENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLP 360
Query: 361 ESAEPGTVVALISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSS 420
ESAEPGTVVALISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSS
Sbjct: 361 ESAEPGTVVALISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSS 420
Query: 421 YDIMVTASDAGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAAS 480
YDIMVTASDAGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAAS
Sbjct: 421 YDIMVTASDAGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAAS 480
Query: 481 DPDSGLNALISYSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDR 540
DPDSGLNALISYSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDR
Sbjct: 481 DPDSGLNALISYSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDR 540
Query: 541 GNPPLSSTVTVRLFVLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDS 600
GNPPLSSTVTVRLFVLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDS
Sbjct: 541 GNPPLSSTVTVRLFVLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDS 600
Query: 601 GYNAWVSYQLLEAPDPSLFAVSRYAGEVRTAVPIPADLPPQKLVIVVKDSGSPPLSTSVT 660
GYNAWVSYQLLEAPDPSLFAVSRYAGEVRTAVPIPADLPPQKLVIVVKDSGSPPLSTSVT
Sbjct: 601 GYNAWVSYQLLEAPDPSLFAVSRYAGEVRTAVPIPADLPPQKLVIVVKDSGSPPLSTSVT 660
Query: 661 LLVSLEEDTHPVVPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAA 720
LLVSLEEDTHPVVPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAA
Sbjct: 661 LLVSLEEDTHPVVPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAA 720
Query: 721 CGVTCFPAGTCACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPT 780
CGVTCFPAGTCACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPT
Sbjct: 721 CGVTCFPAGTCACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPT 780
Query: 781 RSDSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDD 840
RSDSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDD
Sbjct: 781 RSDSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDD 840
Query: 841 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN 900
TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN
Sbjct: 841 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN 900
Query: 901 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
>gi|14277682 protocadherin gamma subfamily C, 4 isoform 2 precursor
[Homo sapiens]
Length = 871
Score = 1626 bits (4211), Expect = 0.0
Identities = 817/831 (98%), Positives = 817/831 (98%)
Query: 1 MLRKVRSWTEIWRWATLLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLS 60
MLRKVRSWTEIWRWATLLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLS
Sbjct: 1 MLRKVRSWTEIWRWATLLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLS 60
Query: 61 ARRLQVAGEVNQRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAE 120
ARRLQVAGEVNQRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAE
Sbjct: 61 ARRLQVAGEVNQRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAE 120
Query: 121 VEIVDVNDHAPRFPRQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFAL 180
VEIVDVNDHAPRFPRQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFAL
Sbjct: 121 VEIVDVNDHAPRFPRQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFAL 180
Query: 181 DVKKRSDGSLVPELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAP 240
DVKKRSDGSLVPELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAP
Sbjct: 181 DVKKRSDGSLVPELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAP 240
Query: 241 AFQQSSYRISVLESAPAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTG 300
AFQQSSYRISVLESAPAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTG
Sbjct: 241 AFQQSSYRISVLESAPAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTG 300
Query: 301 KLTLLGPLDFESENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLP 360
KLTLLGPLDFESENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLP
Sbjct: 301 KLTLLGPLDFESENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLP 360
Query: 361 ESAEPGTVVALISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSS 420
ESAEPGTVVALISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSS
Sbjct: 361 ESAEPGTVVALISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSS 420
Query: 421 YDIMVTASDAGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAAS 480
YDIMVTASDAGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAAS
Sbjct: 421 YDIMVTASDAGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAAS 480
Query: 481 DPDSGLNALISYSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDR 540
DPDSGLNALISYSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDR
Sbjct: 481 DPDSGLNALISYSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDR 540
Query: 541 GNPPLSSTVTVRLFVLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDS 600
GNPPLSSTVTVRLFVLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDS
Sbjct: 541 GNPPLSSTVTVRLFVLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDS 600
Query: 601 GYNAWVSYQLLEAPDPSLFAVSRYAGEVRTAVPIPADLPPQKLVIVVKDSGSPPLSTSVT 660
GYNAWVSYQLLEAPDPSLFAVSRYAGEVRTAVPIPADLPPQKLVIVVKDSGSPPLSTSVT
Sbjct: 601 GYNAWVSYQLLEAPDPSLFAVSRYAGEVRTAVPIPADLPPQKLVIVVKDSGSPPLSTSVT 660
Query: 661 LLVSLEEDTHPVVPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAA 720
LLVSLEEDTHPVVPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAA
Sbjct: 661 LLVSLEEDTHPVVPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAA 720
Query: 721 CGVTCFPAGTCACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPT 780
CGVTCFPAGTCACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPT
Sbjct: 721 CGVTCFPAGTCACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPT 780
Query: 781 RSDSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPG 831
RSDSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLE P PG
Sbjct: 781 RSDSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEVRPLQAQQMLEGYSDPG 831
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 926 bits (2392), Expect = 0.0
Identities = 500/929 (53%), Positives = 634/929 (68%), Gaps = 24/929 (2%)
Query: 25 GYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGAL 84
G+V GQ+RY V EES+ GT VGNVAQD L L +RRLQ+ E N R+F + L SGAL
Sbjct: 25 GWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGAL 84
Query: 85 LIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGE 144
+ IDRE+LCG S SC++P++ VTE PLE+ R EVEI+D+ND++P F + ++ I E
Sbjct: 85 AVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISE 144
Query: 145 AAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREK 204
+A G RFPL+ AQD DVG+N++S Y LS N HF+L+VK DG PEL+LE+ LDRE
Sbjct: 145 SAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREA 204
Query: 205 QSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQL 264
Q+ ++LVLTAVDGG P RSGT + V VLD+NDNAP FQ S R+ + E+AP G +L++L
Sbjct: 205 QARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRL 264
Query: 265 NASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARD 324
NA+DPD G +G + + F HT + VRNLF L P++G + +LGP+DFE +YE RARD
Sbjct: 265 NATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARD 324
Query: 325 GGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGD 384
G PAME HC ++VD+ DVNDNAP + + S + ES GTVV L +V+D DSG NG+
Sbjct: 325 QGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGE 384
Query: 385 VSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLN 444
VSL I LPF +K + N +SL+T+ PLDREA S Y I + ASDAG+P L H TI LN
Sbjct: 385 VSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLN 443
Query: 445 ISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSA 504
ISDVNDN P F Q+ + ++ EN PG LLC++AASDPD+G NA ++YS++ + + A
Sbjct: 444 ISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPA 503
Query: 505 SSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPA 564
SSF+ +NP+ G + A R+FDYE Q LQ V RD G+PPL + ++ +FVLD NDNAPA
Sbjct: 504 SSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPA 563
Query: 565 VLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLL-EAPDPSLFAVSR 623
VL PR PQ LP S G L+TKVTAVD D+G+NAW+SY LL ++ P LF VS
Sbjct: 564 VLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVST 623
Query: 624 YAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAP 682
+ GEVRTA + D Q++V++V+D+G P LS++ T+L+ LE++ +P +
Sbjct: 624 HTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIH 683
Query: 683 REGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREG 742
S LTLYL V+L + +S +F L +KCL+G A G G C RR++
Sbjct: 684 PPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADG----DGGGGQC---CRRQDS 736
Query: 743 LPP---SNGILRIQLGSDDPIKFVDV-----GGHSHGCTPLASAPTRSDSF-----MMVK 789
P +Q+ SD +K+++V SH S + F + V+
Sbjct: 737 PSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQ 796
Query: 790 SPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 849
P+A +A EP + L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 797 QPTA-LALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 855
Query: 850 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 909
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 856 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 915
Query: 910 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 916 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 832 bits (2150), Expect = 0.0
Identities = 451/938 (48%), Positives = 615/938 (65%), Gaps = 38/938 (4%)
Query: 18 LFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRV 77
+FL G+ QIRY VPEE+++G+FVGN+++D L+ L+ R +++ + F V
Sbjct: 19 IFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQLFAV 78
Query: 78 DLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQ 137
+ SG+L+ IDRE LC +SC + +E + E L++Y EVEI+D+ND+AP F +
Sbjct: 79 NPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQEDE 138
Query: 138 LDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLE 197
+++++ E A PG RF L A+D DVG NS+ SY+LS N +F+L ++ R+DG+ PEL+LE
Sbjct: 139 VEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPELVLE 198
Query: 198 KPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPA 257
LDREK++ + L+LTA+DGG+P R G +RV VLDVND+ P F QS YR+SV E+ +
Sbjct: 199 GSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISS 258
Query: 258 GMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYE 317
G ++ +NA+DPD G +G V + F + + +F L TG++ + G LDFE +YE
Sbjct: 259 GTRVLMVNATDPDEGINGEVMYSFR-NMESKASEIFQLDSQTGEVQVRGSLDFEKYRFYE 317
Query: 318 FDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDP 377
+++ +DGG + ++ + ++DVNDNAP IT+TS + ++ E++ PGTV+AL++VQD
Sbjct: 318 MEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQDQ 375
Query: 378 DSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLST 437
DSG NG VS IP+HLPF L+ + N + L+T+ LDRE SY+I +TA+D G+PPLS
Sbjct: 376 DSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPLSA 435
Query: 438 HRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEP 497
++LN++D NDNPP F S+ ++PENN G + S+ A DPDS NAL++YSL +
Sbjct: 436 ETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDD 495
Query: 498 RNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLD 557
+ V SS++S+N TG ++A +SFDYEQ + L+ V ARD G+PPLSS V++ LFVLD
Sbjct: 496 TVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLD 555
Query: 558 LNDNAPAVLRPR-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDP 616
NDNAP +L P GS + P S G+L+TKV AVD DSG NAW+SY+LL+A +P
Sbjct: 556 QNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEP 615
Query: 617 SLFAVSRYAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPD 675
LFAV + GEVRTA + D Q LV+ V+D G PPLS +VTL V++ + V+ D
Sbjct: 616 GLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLAD 675
Query: 676 LRESSAPREGE-SRLTLYLAVSLVAICFVSFGSFVALL---------SKCLRGAACGVTC 725
L + E S L+LYL V++ A+ + + LL S+ L+ + G+
Sbjct: 676 LGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEGGLAG 735
Query: 726 FPAGTCACLTRSRRREGLPPSNGILR-----IQLGSDDPIKFVDVGGHSHGCTPLASAPT 780
P G+ L+ + L +D + ++G T ++
Sbjct: 736 MPTSHFV---------GVDGVQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESC 786
Query: 781 RSDSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDD 840
+++ SA + G+ C P+ +QAPPNTDWRFSQAQRPGTSGSQNGDD
Sbjct: 787 EKSEPLLIAEDSAIILGK-----CDPT----SNQQAPPNTDWRFSQAQRPGTSGSQNGDD 837
Query: 841 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN 900
TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN
Sbjct: 838 TGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQN 897
Query: 901 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 898 VYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 830 bits (2145), Expect = 0.0
Identities = 462/926 (49%), Positives = 598/926 (64%), Gaps = 41/926 (4%)
Query: 30 QIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLIKNP 89
QI Y V EE +EG+ VGN+A+D L L+ R +++ + F ++ SG L+
Sbjct: 30 QILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALNPRSGTLVTAGR 89
Query: 90 IDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAAPPG 149
IDRE LC S +C+ LE + E +++ R EVEI+DVND+ P F +Q ++++ E PG
Sbjct: 90 IDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQREIKVAENENPG 149
Query: 150 QRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSDYR 209
RFPL +A D DVG NS+ Y+L+SN +F+LDV+ +DG PEL+LE+ LDRE+++ +
Sbjct: 150 ARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLERALDREEEAVHH 209
Query: 210 LVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDP 269
LVLTA DGG+P RSGTA + + ++D NDNAP F Q Y +SV E+ P G L+ + A+DP
Sbjct: 210 LVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVGTRLLTVKATDP 269
Query: 270 DLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSPA 329
D G +G+VT+ F D++ LF L+ +G +T+LG LD+E +Y+ DV A DG P
Sbjct: 270 DEGANGDVTYSFR-KVRDKISQLFQLNSLSGDITILGGLDYEDSGFYDIDVEAHDG--PG 326
Query: 330 MEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSLRI 389
+ + V +LD NDNAP +TVTS ++ ES+ PGTV+AL +V D DSG NG V+ I
Sbjct: 327 LRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSI 386
Query: 390 PDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNISDVN 449
PD+LPF L+ + N + L+T LDRE S Y+I VTA+D G PPLST I L + D+N
Sbjct: 387 PDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDIN 446
Query: 450 DNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASSFIS 509
DNPP+F S+ ++PENN G + S+ A DPDSG NA I+YSL E + SS++S
Sbjct: 447 DNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVS 506
Query: 510 LNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVLRPR 569
+N TG ++A SFDYEQ + LQ + A D G+PPLSS V++ LFVLD NDN P +L P
Sbjct: 507 INSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPT 566
Query: 570 -ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAGEV 628
GS + P S +G+L+TKV AVD DSG NAW+SY LL++ +P LFAV + GEV
Sbjct: 567 FPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLLKSSEPGLFAVGLHTGEV 626
Query: 629 RTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDL---RESSAPRE 684
RTA + D Q+LV+VV+D G PPLS +VTL V++ + V+ DL + S+ P
Sbjct: 627 RTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGSLKPSADP-- 684
Query: 685 GESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREGLP 744
+S LTLYL V++ A+ V LL+ LR G+ R G+P
Sbjct: 685 DDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGS--------RLAGVP 736
Query: 745 PSNGILRIQLGSDDPIKFVDVGGHSHGCTP-------LASAPTRSDSFMMVKSPSAPMAG 797
S+ + G D F+ H T + S P+ +D+ + +S
Sbjct: 737 ASHFV-----GVDGVRAFLQTYSHEVSLTADSRKSHLIFSQPSYADTLISRESC------ 785
Query: 798 EPVRPSCPPSDLLY-----GLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 852
E P DLL L+QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE
Sbjct: 786 EKSEPLLITQDLLETKGDPNLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 845
Query: 853 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 912
MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN
Sbjct: 846 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 905
Query: 913 AAGKRDGKAPAGGNGNKKKSGKKEKK 938
AAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 906 AAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
[Homo sapiens]
Length = 934
Score = 828 bits (2138), Expect = 0.0
Identities = 452/934 (48%), Positives = 585/934 (62%), Gaps = 30/934 (3%)
Query: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
+L L L I Y +PEE ++G VGNV + LD SLSARR +V ++R F
Sbjct: 19 VLLLLGALNKASTVIHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVSGASRRFFE 78
Query: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
V+ ++G + + + +DRE LCG SC V LE V E PLE++ EV I D+ND+ P FP Q
Sbjct: 79 VNRETGEMFVNDRLDREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQ 138
Query: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
++ LEI EA PG RFPLE A D DVGSNS+ +Y LS NE+FAL V+ R D + EL+L
Sbjct: 139 EMKLEISEAVAPGTRFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVL 198
Query: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
E+ LDRE++ +LVLTA+DGG P S + + + VLD NDNAP F QS YR VLE AP
Sbjct: 199 ERALDREREPSLQLVLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAP 258
Query: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYY 316
+G ++Q+ A+D D GP+G + + F H VR LF+L TG LT+ G LDFE +
Sbjct: 259 SGTRVVQVLATDLDEGPNGEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLH 318
Query: 317 EFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQD 376
E ++A+D G+ HC + V+++DVNDNAP ITVTS +PE A GTV+AL+SV D
Sbjct: 319 EIYIQAKDKGANPEGAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTD 378
Query: 377 PDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLS 436
D+G NG V+ +P LPF+L S+ +N F+L T+ LDRE Y++ +TA DAG P LS
Sbjct: 379 LDAGENGLVTCEVPPGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLS 438
Query: 437 THRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLE 496
+ + +SD+NDNPP Q S++V++ ENN PG + +L+ DPD+ NA +S+ LLE
Sbjct: 439 ALTIVRVQVSDINDNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLE 498
Query: 497 PRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVL 556
+ ++N G V + DYE + + D G P L++ ++V +FV
Sbjct: 499 QGAETGLVGRYFTINRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVT 558
Query: 557 DLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDP 616
D NDNAP VL P RPG + LP AGHL+++V D D+G+NAW+SY LL +P+
Sbjct: 559 DRNDNAPQVLYP--RPGGSSVEMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQ 616
Query: 617 SLFAVSRYAGEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPD 675
SLFA+ + G++ TA P+ D P Q L +++KD+G P LST+ TL VS+ ED+ +
Sbjct: 617 SLFAIGLHTGQISTARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAE 676
Query: 676 LRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLT 735
SAPRE + LT YL +SL+ VS G V + GV F
Sbjct: 677 FPSGSAPREQKKNLTFYLLLSLI---LVSVGFVVTVF---------GVIIFK----VYKW 720
Query: 736 RSRRREGLPPSNGILRIQLGS--DDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVKSPSA 793
+ R P + + R S D ++ + H + L + RSD + ++
Sbjct: 721 KQSRDLYRAPVSSLYRTPGPSLHADAVRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAAS 780
Query: 794 PMAG-EPVRPSCPPSDLLYGL--------EQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 844
P+A + SC P L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTW
Sbjct: 781 PLASRQNTLRSCDPVFYRQVLGAESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 840
Query: 845 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 904
PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP
Sbjct: 841 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 900
Query: 905 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 934
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 825 bits (2132), Expect = 0.0
Identities = 443/930 (47%), Positives = 593/930 (63%), Gaps = 53/930 (5%)
Query: 27 VCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLI 86
+C QIRY +PEE +G+ VGN+A D L R+L+V+ E + +F V +SG LL+
Sbjct: 29 LCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVSAESGELLV 86
Query: 87 KNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAA 146
+ +DRE +CG +C + E V E PL Y VEI D+NDH P+F + +L+I E+A
Sbjct: 87 SSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESA 146
Query: 147 PPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQS 206
PG RF LE A+DAD+G NS+ Y+LS N F+L +K++ DGS PEL LEK LDRE+QS
Sbjct: 147 QPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELALEKTLDREQQS 206
Query: 207 DYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNA 266
+RLVLTA+DGG+PP SGT ELR+ V D NDN P F + YR+S+ E+ P G ++Q++A
Sbjct: 207 YHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENVPPGTTVLQVSA 266
Query: 267 SDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGG 326
+D D G + +T+ F R +FSL+ +G++T LDFE Y V RDGG
Sbjct: 267 TDQDEGINSEITYSFY-----RTGQIFSLNSKSGEITTQKKLDFEETKEYSMVVEGRDGG 321
Query: 327 SPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVS 386
+ C++ +++ D NDN+P +T S L + E+A PGT++ALI + D DSG NG+V+
Sbjct: 322 G--LVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIHDQDSGENGEVN 379
Query: 387 LRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNIS 446
++ +PF + S+ +N + LVT G LDRE Y++ +TA+D G PPLS+ ++ L+I
Sbjct: 380 CQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPLSSSISVILHIR 439
Query: 447 DVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASS 506
DVNDN P F Q S+ V VPENN PG + + ASD D GLN +SYS++ ++ +S
Sbjct: 440 DVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIMASDLEPLALAS 499
Query: 507 FISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVL 566
++S++ Q+G V A R+FDYEQ +T + +QARD+G+P LS+ V++R+ V D NDNAP VL
Sbjct: 500 YVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAPRVL 559
Query: 567 RPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYA 625
P P GS +P + G+L+TKV AVD DSG+NAW+SY +L+A +P LF++
Sbjct: 560 YPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRT 619
Query: 626 GEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPRE 684
GEVRTA + D Q+L++ V+D G PPLS + TL + + V+PD+ + P +
Sbjct: 620 GEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPVPSD 679
Query: 685 GESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGV--TCFPAGTCACLTRSRRREG 742
++ L YL V+L I + + + ++ LR ++ +CF G C +
Sbjct: 680 PQAELQFYLVVALALISVLFLLAVILAVALRLRRSSSPAAWSCFQPGLCV-----KSGPV 734
Query: 743 LPPSNGILRIQLGSDDPIKFVDVGGHSHGCTP----LASAPTRSDSFMMVKSPSAPMAGE 798
+PP+ +S G P L A T F +K +G+
Sbjct: 735 VPPN---------------------YSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQ 773
Query: 799 PVR---------PSCPPSDLLYGLE-QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 848
+ P C S+ E QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
Sbjct: 774 DILCGDSSGALFPLCNSSESTSHPELQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ 833
Query: 849 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 908
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
Sbjct: 834 FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA 893
Query: 909 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 894 TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 819 bits (2115), Expect = 0.0
Identities = 450/944 (47%), Positives = 596/944 (63%), Gaps = 57/944 (6%)
Query: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
LL LF G + QIRY +PEE G+ VG +A+D L L R+L+V+ E +F
Sbjct: 19 LLSLF--CGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAE---DYFN 73
Query: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
V L+SG LL+ IDRE +CG C + E V E P+ ++ V I D+ND+APRF +
Sbjct: 74 VSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAK 133
Query: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
+DLEI E+A PG +F L+ AQDADV NS+ Y ++ N++F+L K+ DGS P LLL
Sbjct: 134 GIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLL 193
Query: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
EKPLDRE QS +RL+LTA+DGG+PP SGT + + V D NDNAP F Q YR+S+ E+ P
Sbjct: 194 EKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVP 253
Query: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYY 316
G ++++ A+D D G + +T+ F +LF+L+P TG +T G LDFE + Y
Sbjct: 254 WGTSVLRVMATDQDEGINAEITYAFLNSPIST--SLFNLNPNTGDITTNGTLDFEETSRY 311
Query: 317 EFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQD 376
V A+DGG HC+++++++D NDNAP +T S +PE ++ GTV+ALI V+D
Sbjct: 312 VLSVEAKDGG--VHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRD 369
Query: 377 PDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLS 436
DSG NG V+ + +PF L+S +N + LV AG L+RE + Y++ + A+D G P LS
Sbjct: 370 KDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALS 429
Query: 437 THRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLE 496
+ +I L+ISD+NDN P F Q S+ V V ENN PG + ++ASDPD G N +SYS+L
Sbjct: 430 SRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILA 489
Query: 497 PRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVL 556
S++S++PQ+G V A R+FD+EQ + + +QARD+G+P LS+ V++R+ V
Sbjct: 490 SDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVG 549
Query: 557 DLNDNAPAVLRPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPD 615
DLNDNAP VL P P GS +P + G+L+TKV AVD DSG+NAW+SY +L+A +
Sbjct: 550 DLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 609
Query: 616 PSLFAVSRYAGEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVP 674
P LF++ GEVRTA + D Q+L++ V+D G PPLS + TL + + V+P
Sbjct: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 669
Query: 675 DLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVT--CFPAGTCA 732
DL + P + ++ L YL V+L I + + + ++ LR ++ T CF G C
Sbjct: 670 DLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLC- 728
Query: 733 CLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLA--------SAPTRSDS 784
S+ G+PP+ HS G P + SA T +S
Sbjct: 729 ----SKSGPGVPPN---------------------HSEGTLPYSYNLCIASHSAKTEFNS 763
Query: 785 FMMVKSPSAP---MAGEPVRPSCPPS-------DLLYGLEQAPPNTDWRFSQAQRPGTSG 834
+ + P + +P C + D QAPPNTDWRFSQAQRPGTSG
Sbjct: 764 LNLTPEMAPPQDLLCDDPSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSG 823
Query: 835 SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV 894
SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV
Sbjct: 824 SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV 883
Query: 895 PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 884 PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 816 bits (2108), Expect = 0.0
Identities = 460/943 (48%), Positives = 596/943 (63%), Gaps = 35/943 (3%)
Query: 12 WRWATLLFLFYHLGYVC----GQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVA 67
W LL F LG +C GQIRY +PEE +G+FVGN+A+D L+ L+ R +++
Sbjct: 8 WGCGELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIV 67
Query: 68 GEVNQRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVN 127
+ F ++ SG+L+ IDRE LC S C+V + E +++Y EVEI+D+N
Sbjct: 68 SRGRTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDIN 127
Query: 128 DHAPRFPRQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSD 187
D+ PRF ++L +++ E A G R L A+DADVG NS+ SY+LSSN HF+LDV +D
Sbjct: 128 DNFPRFRDEELKVKVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTD 187
Query: 188 GSLVPELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSY 247
G PEL+LE+PLDREK++ + L+LTA+DGG+P SGT +RV+VLD NDNAP F S Y
Sbjct: 188 GQKYPELVLEQPLDREKETVHDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEY 247
Query: 248 RISVLESAPAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGP 307
+SV E+ P G L+ L A+DPD G +G +T+ F + +++ F L G+++ L
Sbjct: 248 SVSVPENIPVGTRLLMLTATDPDEGINGKLTYSFR-NEEEKISETFQLDSNLGEISTLQS 306
Query: 308 LDFESENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGT 367
LD+E +Y +V A+DGG A+ + V + DVNDNAP + +TS ++ E PGT
Sbjct: 307 LDYEESRFYLMEVVAQDGG--ALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGT 364
Query: 368 VVALISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTA 427
V+AL SV D DSG NG+++ IP +LPF L+ + N + L+T LDRE S Y+I +T
Sbjct: 365 VIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTV 424
Query: 428 SDAGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLN 487
D G PPLST I L ++DVNDNPP+F Q S+ V ENN G + S+ A DPDSG N
Sbjct: 425 MDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDN 484
Query: 488 ALISYSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSS 547
A ++YSL E + SS++S+N TG ++A RSFDYEQ + LQ V A D GNPPLSS
Sbjct: 485 ARVTYSLAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSS 544
Query: 548 TVTVRLFVLDLNDNAPAVLRPR-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWV 606
V++ LFVLD NDN P +L P GS + P S G+L+TKV AVD DSG NAW+
Sbjct: 545 NVSLSLFVLDQNDNTPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWL 604
Query: 607 SYQLLEAPDPSLFAVSRYAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSL 665
SY+LL+A +P LFAV + GEVRTA + D Q LV+ V+D G PPLS + T+ V++
Sbjct: 605 SYRLLKASEPGLFAVGLHTGEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAV 664
Query: 666 EEDTHPVVPDLRESSAPREGES-RLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVT 724
+ ++ DL P + E LTLYL V++ A+ V + LL LR
Sbjct: 665 ADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRL 724
Query: 725 CFPAGTCACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTP-------LAS 777
G+ R G+P S+ + G D F+ H T +
Sbjct: 725 LQAEGS--------RLAGVPASHFV-----GVDGVRAFLQTYSHEVSLTADSRKSHLIFP 771
Query: 778 APTRSDSFMMVKS--PSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGS 835
P +D+ + +S S P+ + + ++QAPPNTDWRFSQAQRPGTSGS
Sbjct: 772 QPNYADTLLSEESCEKSEPLL---MSDKVDANKEERRVQQAPPNTDWRFSQAQRPGTSGS 828
Query: 836 QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP 895
QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP
Sbjct: 829 QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP 888
Query: 896 DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 889 DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 813 bits (2099), Expect = 0.0
Identities = 462/939 (49%), Positives = 591/939 (62%), Gaps = 56/939 (5%)
Query: 25 GYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGAL 84
G QIRY +PEE ++G+FVGN+ +D L+ L+ +++ + F ++ +G+L
Sbjct: 25 GAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRGRMQLFSLNPRNGSL 84
Query: 85 LIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGE 144
+ IDRE LC S C+V + E L +Y EVEIVD+ND+ PRF +++L+++I E
Sbjct: 85 VTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPRFLKEELEVKILE 144
Query: 145 AAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREK 204
A P RFPL + D DVG NS+ ++LS N HF++DV+ + G PEL+LE LDRE
Sbjct: 145 NAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPELVLEGTLDREG 204
Query: 205 QSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQL 264
++ YRLVLTA+DGG+P RS A++ V+VLDVNDN P F Q YR+SV E+ P G ++ +
Sbjct: 205 EAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPENLPVGTPVLAV 264
Query: 265 NASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARD 324
A+D D G G VT+ F T +++ +F L+ TG+++ LD+E ++YE V ARD
Sbjct: 265 TATDQDEGVHGEVTYSFVKIT-EKISQIFCLNVLTGEISTSANLDYEDSSFYELGVEARD 323
Query: 325 GGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGD 384
G P + + + +LDVNDN P + VTS T+ ESA PGTV+AL V D DSG NG
Sbjct: 324 G--PGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAESAPPGTVIALFQVFDRDSGLNGL 381
Query: 385 VSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLN 444
V+ IP LPF L+ + N + LVT LDRE Y+I VTA+D G PPLST I LN
Sbjct: 382 VTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNITVTATDKGTPPLSTETIISLN 441
Query: 445 ISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSA 504
++D NDNPP+F S+ V+V ENN G + S+ A DPD NA +SYSL E +
Sbjct: 442 VADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYSLAEDTLQGAPL 501
Query: 505 SSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPA 564
SS++S+N TG ++A RSFDYEQ + LQ V A D G+PPLSS V++ LFVLD NDNAP
Sbjct: 502 SSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVLDQNDNAPE 561
Query: 565 VLRPR-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSR 623
+L P GS + P S G+L+TKV AVD DSG NAW+SY+LL+A +P LF+V
Sbjct: 562 ILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGL 621
Query: 624 YAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRE-SSA 681
+ GEVRTA + D Q LV+ V+D G PPLS +VTL V++ + ++ DL +
Sbjct: 622 HTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPS 681
Query: 682 PREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRRE 741
+ +S LTLYL V++ A+ V + LL+ LR L R +
Sbjct: 682 AKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLA--LR----------------LQRWHKSR 723
Query: 742 GLPPSNGILRIQLGSDDPIKFVDVGG-------HSHGCTPLASA---------PTRSDSF 785
L S G L GS FV V G +SH + A + P +D+
Sbjct: 724 LLQASGGGLASMPGS----HFVGVEGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTL 779
Query: 786 MMVKSPSAPMAGEPVRPSCPPSDLL------YGLEQAPPNTDWRFSQAQRPGTSGSQNGD 839
+ +S E P DLL L+QAPPNTDWRFSQAQRPGTSGSQNGD
Sbjct: 780 INQES------YEKSEPLLITQDLLETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGD 833
Query: 840 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 899
DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ
Sbjct: 834 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 893
Query: 900 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 894 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 811 bits (2095), Expect = 0.0
Identities = 453/940 (48%), Positives = 592/940 (62%), Gaps = 52/940 (5%)
Query: 24 LGYVC----GQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDL 79
LG +C GQIRY V EE +G+FVGN+A D L+ L+ R +++ + F ++
Sbjct: 20 LGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRTQLFSLNP 79
Query: 80 DSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLD 139
SG+L+ IDRE LC C+V + + E L+++ E+EI D+ND+AP FP ++L+
Sbjct: 80 QSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELE 139
Query: 140 LEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKP 199
++IGE PG RFP++ A D DVG NS+ +Y+LS N++F+L V S+G+ PEL+LE+
Sbjct: 140 IKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERA 199
Query: 200 LDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGM 259
LDREK+ ++LVL A DGG+P SG ++V VLD NDN P F Q YR+SV E+ P G
Sbjct: 200 LDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGT 259
Query: 260 VLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFD 319
L+ +NA+DPD G + V+ Y P ++ +F L+ +G++++L LD+E +YE
Sbjct: 260 RLLTVNATDPDEGFNAQVS-YILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIK 318
Query: 320 VRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDS 379
+ A+DG P + + V +LDVNDNAP IT+TS ++PE G +ALI V D DS
Sbjct: 319 IEAQDG--PGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVHDRDS 376
Query: 380 GSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHR 439
G NG V + + +LPF L+ + + LVTA LDRE S Y+I + ASD G+PPLST
Sbjct: 377 GQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGSPPLSTET 436
Query: 440 TIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRN 499
I L++ D+NDNPP+F S+ ++PENN G + S+ A DPDS NA I+Y+L E
Sbjct: 437 HITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYALTEDTL 496
Query: 500 RDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLN 559
+ SSF+S+N TG ++A RSFDYEQ + L+ V A D GNPPLSS V++ LFVLD N
Sbjct: 497 QGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQN 556
Query: 560 DNAPAVLRPR-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSL 618
DNAP +L P GS + P S G+L+TKV AVD DSG NAW+SY+LL+A +P L
Sbjct: 557 DNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGL 616
Query: 619 FAVSRYAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLR 677
F+V + GEVRTA + D Q LV+ V+D G PPLS +VTL V++ + ++ DL
Sbjct: 617 FSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLG 676
Query: 678 E-SSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTR 736
+ + +S LTLYL V++ A+ V + LL+ LR R
Sbjct: 677 SLEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLR------------------R 718
Query: 737 SRRREGLPPSNGILRIQ-----LGSDDPIKFVDVGGHSHGCTP-------LASAPTRSDS 784
+ L S G L +G+D F+ H T + P +D+
Sbjct: 719 WHKSRLLQASGGGLASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADT 778
Query: 785 FMMVKSPSAPMAGEPVRPSCPPSDLLYG------LEQAPPNTDWRFSQAQRPGTSGSQNG 838
+ +S E P DLL L+QAPPNTDWRFSQAQRPGTSGSQNG
Sbjct: 779 LISQES------CEKSEPLLITQDLLEMKGDSNLLQQAPPNTDWRFSQAQRPGTSGSQNG 832
Query: 839 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR 898
DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR
Sbjct: 833 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR 892
Query: 899 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 893 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 805 bits (2080), Expect = 0.0
Identities = 450/929 (48%), Positives = 585/929 (62%), Gaps = 45/929 (4%)
Query: 29 GQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLIKN 88
G I Y VPEE+ +G+FVGN+A+D L L+ +++ F ++ SG+L+
Sbjct: 29 GNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRMPLFALNPRSGSLITAR 88
Query: 89 PIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAAPP 148
IDRE LC S C+V + E ++++ EVEI+D+ND+ P+F ++L+ ++ E P
Sbjct: 89 RIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQFQLEELEFKMNEITTP 148
Query: 149 GQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSDY 208
G R L QD DVG NS+ SY+LSSN HF+LDV++ +DG PE++L+ PLDRE+++ +
Sbjct: 149 GTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVH 208
Query: 209 RLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASD 268
L+LTA DGG P RSGT + + V+D NDN PAF Q+ Y I+V E+ P G L+ +NA+D
Sbjct: 209 HLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPENVPLGTQLLMVNATD 268
Query: 269 PDLGPSGNVTFYFSGHTPD-RVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGS 327
PD G +G VT+ F H D RV +F L TG+++ PLDFE Y +V+A+DG
Sbjct: 269 PDEGANGEVTYSF--HNVDHRVAQIFRLDSYTGEISNKEPLDFEEYKMYSMEVQAQDGA- 325
Query: 328 PAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSL 387
+ + + +LDVNDNAP +T+TS +PE+ PGT++ALISV D DSG NG +
Sbjct: 326 -GLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVHDQDSGDNGYTTC 384
Query: 388 RIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNISD 447
IP +LPF L+ N + LVT LDRE S Y+I +TA D G P LST I L ++D
Sbjct: 385 FIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPALSTETHISLLVTD 444
Query: 448 VNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASSF 507
+NDN P F Q S+ ++PENN G + S+ A D DS NA I+YSL+E + S++
Sbjct: 445 INDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLIEDTIQGAPLSAY 504
Query: 508 ISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVLR 567
+S+N TG ++A RSFDYEQ + +Q +V ARD G+PPLSS V++ LF+LD NDNAP +L
Sbjct: 505 LSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLLDQNDNAPEILY 564
Query: 568 PR-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAG 626
P GS + P S G+L+TKV AVD DSG NAW+SY+LL+A +P LF+V + G
Sbjct: 565 PALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTG 624
Query: 627 EVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRE-SSAPRE 684
EVRTA + D Q LV+ V+D G PPLS +VTL V++ + ++ DL + +
Sbjct: 625 EVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILADLGSLEPSAKP 684
Query: 685 GESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREGLP 744
+S LTLYL V+ A+ V + LL+ LR R + L
Sbjct: 685 NDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLR------------------RWHKSRLLQ 726
Query: 745 PSNGILRIQLGSDDPIKFVDVGG-------HSHGCTPLASA-------PTRSDSFMMVKS 790
S G L GS FV V G +SH + A + P + + ++
Sbjct: 727 ASGGGLASMPGS----HFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQ 782
Query: 791 PSAPMAGEPVRPSCPPSDLLYGL-EQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 849
S G P D +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 783 ESCEKKGFLSAPQSLLEDKKEPFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 842
Query: 850 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 909
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 843 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 902
Query: 910 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 805 bits (2080), Expect = 0.0
Identities = 439/929 (47%), Positives = 583/929 (62%), Gaps = 51/929 (5%)
Query: 27 VCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLI 86
+C QIRY +PEE +G+ VGN+A D L R+L+V+ E + +F V +SG LL+
Sbjct: 29 LCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSE--KPYFTVSAESGELLV 86
Query: 87 KNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAA 146
+ +DRE +CG +C + E V E PL Y VEI D+NDH P+F + +L+I E+A
Sbjct: 87 SSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQNSFELQISESA 146
Query: 147 PPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQS 206
PG RF L A DAD+GSN++ +Y+LS ++HF+L K++SDGS PE++L+ PLDREKQ
Sbjct: 147 QPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMVLKTPLDREKQK 206
Query: 207 DYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNA 266
Y L LTA+D G PP S TA++ V V D NDNAP F Q YR+S+ E+ G ++Q+ A
Sbjct: 207 SYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENVYPGTTVLQVTA 266
Query: 267 SDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGG 326
+D D G + +TF FS + F L+ TG++T+L LDFE Y + ARDGG
Sbjct: 267 TDQDEGVNAEITFSFSEASQI---TQFDLNSNTGEITVLNTLDFEEVKEYSIVLEARDGG 323
Query: 327 SPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVS 386
M C++ V+++D NDNAP + S + E AE GT +AL+ V+D DS NG+V+
Sbjct: 324 G--MIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDSRHNGEVT 381
Query: 387 LRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNIS 446
++ +PF + ++ RN + LVT LDRE Y+I VTA+D G PPLS+ +I L+I
Sbjct: 382 CKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPLSSSSSITLHIG 441
Query: 447 DVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASS 506
DVNDN P F Q S+ V V ENN PG + + ASDPD G N +SY ++ SS
Sbjct: 442 DVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIMASDLEQRELSS 501
Query: 507 FISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVL 566
++S++ ++G V A R+FD+EQ + + +QARD+G+P LS+ V++R+ V D NDNAP VL
Sbjct: 502 YVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVDDRNDNAPRVL 561
Query: 567 RPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYA 625
P P GS +P + G+L+TKV AVD DSG+NAW+SY +L+A +P LF++
Sbjct: 562 YPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRT 621
Query: 626 GEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPRE 684
GEVRTA + D Q+L++ V+D G PPLS + TL + + V+PD+ + P +
Sbjct: 622 GEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLPDITDRPDPSD 681
Query: 685 GESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVT--CFPAGTCACLTRSRRREG 742
++ L YL V+L I + + + ++ LR ++ + CF G C + E
Sbjct: 682 LQAELQFYLVVALALISVLFLVAMILAIALRLRRSSSPASWSCFQPGLCV------KSES 735
Query: 743 LPPSNGILRIQLGSDDPIKFVDVGGHSHGCTP----LASAPTRSDSFMMVKSPSAPMAGE 798
+ P N +S G P L A T F +K +G+
Sbjct: 736 VVPPN--------------------YSEGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQ 775
Query: 799 PVR---------PSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 849
+ P C S+L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 776 DILCGDSSGALFPLCNSSELT-SHQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 834
Query: 850 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 909
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 835 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 894
Query: 910 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 895 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 805 bits (2078), Expect = 0.0
Identities = 460/943 (48%), Positives = 594/943 (62%), Gaps = 46/943 (4%)
Query: 17 LLFLFYHLGYVCG--QIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRH 74
LL LF+ + + G QI Y +PEE ++G+FVGN+++D L L+ R +++ +
Sbjct: 19 LLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRTQL 78
Query: 75 FRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFP 134
F ++ SG+L+ IDRE LC SA C+V + E ++++ E+E+ D+ND+AP+F
Sbjct: 79 FSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQ 138
Query: 135 RQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPEL 194
+ LD++I E G RFPL +A D DVG NS+ SY+LS N+HF+L V+ R++G PEL
Sbjct: 139 AENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPEL 198
Query: 195 LLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLES 254
+LE LDRE+++ + LVLTA DGG+P RSGT + V+V D NDNAP F YR+SV E+
Sbjct: 199 VLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPEN 258
Query: 255 APAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESEN 314
P G L+ + A+D D G +G VT+ F PD F L+ TG++ + LD+E
Sbjct: 259 LPVGTQLLTVTATDRDEGANGEVTYSFR-KLPDTQLLKFQLNKYTGEIKISENLDYEETG 317
Query: 315 YYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISV 374
+YE +++A DGG+ + V+ DVNDN+P +T+TS + E + GTVVAL++V
Sbjct: 318 FYEIEIQAEDGGAYLATAKVLITVE--DVNDNSPELTITSLFSPVTEDSPLGTVVALLNV 375
Query: 375 QDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPP 434
D DS NG V+ I +LPF L+ + + + LV LDRE SSY+I VTA+D G+PP
Sbjct: 376 HDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPP 435
Query: 435 LSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSL 494
LST L ++D+NDNPP+F Q S+ ++PENN G + S+ A DPDS NA I YSL
Sbjct: 436 LSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSL 495
Query: 495 LEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLF 554
E + V SS+IS+N TG ++A RSFDYEQ LQ +V A D G+PPLSS V++ LF
Sbjct: 496 AEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLF 555
Query: 555 VLDLNDNAPAVLRPR-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEA 613
VLD NDNAP +L P GS + P S G+L+TKV AVD DSG NAW+SY+LL+A
Sbjct: 556 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKA 615
Query: 614 PDPSLFAVSRYAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPV 672
+P LFAV + GEVRTA + D Q LV+ V+D G PPLS +VTL V++ + V
Sbjct: 616 SEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQV 675
Query: 673 VPDLRESSAPREGE-SRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTC 731
+ DL +P E S LTLYL V++ A+ V + LL+ LR
Sbjct: 676 LADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLR-------------- 721
Query: 732 ACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGG-------HSHGCTPLASAPTRSDS 784
R + L S G L GS FV V G +SH + A +
Sbjct: 722 ----RWHKSRLLQASGGGLTGVSGS----HFVGVDGVRAFLQTYSHEVSLTADSRKSHLI 773
Query: 785 FMMVKSPSAPMAGEPVRPSCPPS---DLLYGLE------QAPPNTDWRFSQAQRPGTSGS 835
F ++ E + P S D + +E QAPPNTDWRFSQAQRPGTSGS
Sbjct: 774 FPQPNYADTLISQESCEKNDPLSLLDDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGS 833
Query: 836 QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP 895
QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP
Sbjct: 834 QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP 893
Query: 896 DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 894 DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 936
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 805 bits (2078), Expect = 0.0
Identities = 439/926 (47%), Positives = 592/926 (63%), Gaps = 21/926 (2%)
Query: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
LL LFY +C IRY +PEE +G+ VGN+A+D L +SAR L+V+ E + HF
Sbjct: 21 LLPLFYPT--LCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSAE--KLHFS 76
Query: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
VD SG LL+K+ IDRE +C C + LE V E PL ++ V I DVNDHAP+F +
Sbjct: 77 VDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFRKD 136
Query: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
+++LEI E+ G LE A+D D+ NS+S Y+LS NE+F+L K DG PEL+L
Sbjct: 137 EINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDGGKYPELVL 196
Query: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
+K LDRE QS + LVLTA+DGG+PPRSGTA++R+ V+D NDN P F Q YR+S+ E P
Sbjct: 197 QKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVSLREDVP 256
Query: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYY 316
G ++++ A+D D G + +T+ F G D+ +++FSL TTG + PLDFE Y
Sbjct: 257 PGTSILRVKATDQDEGINSEITYSFFG-VADKAQHVFSLDYTTGNILTQQPLDFEEVERY 315
Query: 317 EFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQD 376
++ A+D GS + C + V+++D NDN+P I +TS + E + PG VVAL +D
Sbjct: 316 TINIEAKDRGS--LSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVVVALFKTRD 373
Query: 377 PDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLS 436
DSG NG+V + +PF + S+ N + LVT LDRE Y++ + A+D G PPLS
Sbjct: 374 QDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAATDRGKPPLS 433
Query: 437 THRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLE 496
+ +TI L+I+DVNDN P F Q ++ V VPENN+PG + ++ASDPD GLN +SYSL+
Sbjct: 434 SSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNGRVSYSLIA 493
Query: 497 PRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVL 556
+ SS++S++ Q+G V A R+FD+EQ +T + +QARD+G+P LS+ V++R+ V
Sbjct: 494 SDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVG 553
Query: 557 DLNDNAPAVLRPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPD 615
D NDNAP VL P P GS +P + G+L+TKV AVD DSG+NAW+SY +++A +
Sbjct: 554 DRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLSYHVVQASE 613
Query: 616 PSLFAVSRYAGEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVP 674
P LF++ GEVR + D Q+L++ V+D G PPLS + TL + + V+P
Sbjct: 614 PGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEVLP 673
Query: 675 DLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVT--CFPAGTCA 732
D + P + ++ + YL V+L I + + + ++ LR + CF + C
Sbjct: 674 DFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAGDCFESVLC- 732
Query: 733 CLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVKSPS 792
S+ PP+ + + + + + T + P D+ +
Sbjct: 733 ----SKSGPVGPPNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHCPATQDNL----NKD 784
Query: 793 APMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 852
+ + + PS +D +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE
Sbjct: 785 SMLLASILTPSV-EADKKILKQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTE 843
Query: 853 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 912
MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN
Sbjct: 844 MLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTN 903
Query: 913 AAGKRDGKAPAGGNGNKKKSGKKEKK 938
AAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 AAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 803 bits (2074), Expect = 0.0
Identities = 456/935 (48%), Positives = 594/935 (63%), Gaps = 54/935 (5%)
Query: 28 CGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLIK 87
C QIRY VPEE ++G+ VG++++D L+ L+ R +++ + F ++ SG+L+
Sbjct: 28 CTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQLFALNPRSGSLVTA 87
Query: 88 NPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAAP 147
IDRE LC + C + L+ + E +++Y EVE+ D+ND+AP F +L+++I E A
Sbjct: 88 GRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYFRESELEIKISENAA 147
Query: 148 PGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSD 207
RFPL A D D+G NS+ SY LS N HF+L V+ +DGS PEL+L++ LDRE+++
Sbjct: 148 TEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPELVLKRALDREEKAA 207
Query: 208 YRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNAS 267
+ LVLTA DGG+P R+GTA +RV VLD NDNAPAF Q YR SV E+ G L+ +NA+
Sbjct: 208 HHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPENLALGTQLLVVNAT 267
Query: 268 DPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGS 327
DPD G + V + F + D+ +F L +G ++ +G LD E +Y+ +V+A D
Sbjct: 268 DPDEGVNAEVRYSFR-YVDDKAAQVFKLDCNSGTISTIGELDHEESGFYQMEVQAMDNAG 326
Query: 328 PAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSL 387
+ + +LDVNDNAP + +TS ++PE++ GT++AL++V D DS NG V
Sbjct: 327 --YSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVNDQDSEENGQVIC 384
Query: 388 RIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNISD 447
I +LPF L+ ++ N +SLVT LDRE SY+I VTA+D G PPLST I LN++D
Sbjct: 385 FIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLSTETHISLNVAD 444
Query: 448 VNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASSF 507
NDNPP F Q S+ ++PENN G L S+ A DPD NA I+YSL E + S SS+
Sbjct: 445 TNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAENTIQGASLSSY 504
Query: 508 ISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVLR 567
+S+N TG ++A SFDYEQ + LQ +V ARD G+PPLSS V++ LFVLD NDNAP +L
Sbjct: 505 VSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVLDQNDNAPEILY 564
Query: 568 PR-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAG 626
P GS + P S G+L+TKV AVD DSG NAW+SY+LL+A +P LF+V + G
Sbjct: 565 PALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTG 624
Query: 627 EVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPREG 685
EVRTA + D Q LV+ V+D G PPLS +VTL V++ + V+ DL +P
Sbjct: 625 EVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLADLGSLESPANS 684
Query: 686 E-SRLTLYLAVSLVAICFVSFGSFVALL----------SKCLRGAACGVTCFPAGTCACL 734
E S LTLYL V++ A+ V F +FV LL S+ L+ + G+T
Sbjct: 685 ETSDLTLYLVVAVAAVSCV-FLAFVILLLALRLRRWHKSRLLQASGGGLT---------- 733
Query: 735 TRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASA-----PTRSDSFMMVK 789
G P S+ + G D F+ H T + P + + M+V
Sbjct: 734 -------GAPASHFV-----GVDGVQAFLQTYSHEVSLTTDSRKSHLIFPQPNYADMLVS 781
Query: 790 SPSAPMAGEPVRPSCPPSDLLYG------LEQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 843
S E P D ++ +EQAPPNTDWRFSQAQRPGTSGSQNGDDTGT
Sbjct: 782 QESF----EKSEPLLLSGDSVFSKDSHGLIEQAPPNTDWRFSQAQRPGTSGSQNGDDTGT 837
Query: 844 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 903
WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI
Sbjct: 838 WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYI 897
Query: 904 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 898 PGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 803 bits (2073), Expect = 0.0
Identities = 441/939 (46%), Positives = 604/939 (64%), Gaps = 32/939 (3%)
Query: 13 RWATLLFLFY---HLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGE 69
RW +L F G + QIRY +PEE + + VGN+A+D L L AR+L+V+ E
Sbjct: 12 RWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAE 71
Query: 70 VNQRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDH 129
+ +F V+ +SG LL+ + IDRE +CG C++ + V E PL ++ V + D+ND+
Sbjct: 72 --KEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDN 129
Query: 130 APRFPRQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGS 189
P F + +++L+IGE+ PG FPL+ A D+DVG NS+ Y L+ NE+F L K+ DG
Sbjct: 130 TPLFKQTKINLKIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGR 189
Query: 190 LVPELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRI 249
PEL+L+ LDRE+ S ++LVLTAVDGG+PP+SGT ++R+ V D NDN P F Q YR+
Sbjct: 190 KYPELILKHSLDREEHSLHQLVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRV 249
Query: 250 SVLESAPAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLD 309
++ E P G ++Q+ A+D D G + +T+ F + ++V++ F+L+ TG++T LD
Sbjct: 250 TLREDVPPGFFVLQVTATDRDEGINAEITYSFH-NVDEQVKHFFNLNEKTGEITTKDDLD 308
Query: 310 FESENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVV 369
FE + Y + A+D G A HCS++V++LD ND AP + VTS LPE + PGTV+
Sbjct: 309 FEIASSYTLSIEAKDPGDLAA--HCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVI 366
Query: 370 ALISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASD 429
ALI +D DSG NG+V ++ + F LKS+ +N + LVT G LDRE Y++ +TA+D
Sbjct: 367 ALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATD 426
Query: 430 AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNAL 489
G PPLS+ + L+ISDVNDN P F Q S+ V V ENN PG + ++ASDPD G +
Sbjct: 427 GGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQ 486
Query: 490 ISYSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTV 549
+SYS++ + S++S++ Q+G V A R+FD+EQ + + +QARD+G+P LS+ V
Sbjct: 487 VSYSIVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANV 546
Query: 550 TVRLFVLDLNDNAPAVLRPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSY 608
++R+ V DLNDNAP VL P P GS +P + G+L+TKV AVD DSG+NAW+SY
Sbjct: 547 SLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSY 606
Query: 609 QLLEAPDPSLFAVSRYAGEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEE 667
+L+A +P LF++ GEVRTA + D Q+L++ V+D G PPLS + TL + +
Sbjct: 607 HVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFAD 666
Query: 668 DTHPVVPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLR--GAACGVTC 725
V+PDL + P + +++L YL V+L I + F + + +S LR + C
Sbjct: 667 SLQEVLPDLSDRREPSDPQAKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAWDC 726
Query: 726 FPAGTCA----CLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTP--LASAP 779
F G + + + LP S + + F+++ TP + +
Sbjct: 727 FQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNI-------TPELVPAQD 779
Query: 780 TRSDSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGD 839
D+ ++ + AG P SD + L+QAPPNTDWRFSQAQRPGTSGSQNGD
Sbjct: 780 LVCDNASWEQNTNHGAAGVPF-----ASDTI--LKQAPPNTDWRFSQAQRPGTSGSQNGD 832
Query: 840 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 899
DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ
Sbjct: 833 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 892
Query: 900 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 893 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 801 bits (2069), Expect = 0.0
Identities = 448/933 (48%), Positives = 588/933 (63%), Gaps = 34/933 (3%)
Query: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
LL LFY + IRY +PEE +G+ VGN+A+D L +SAR+L+V+ E + HF
Sbjct: 21 LLPLFYPT--LSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSAE--KLHFS 76
Query: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
VD +SG LL+KN IDRE +C C + LE V E PL ++ V I DVNDHAP+F ++
Sbjct: 77 VDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFDKK 136
Query: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
++ LEI E+A G R L+ A D D+ NSI Y+++SN +F+L V+ SDG PEL L
Sbjct: 137 EIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPELSL 196
Query: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
EK LDRE+Q + L+LTA+DGG+PPRS TA + +SV D NDN P F + YRIS+ E+ P
Sbjct: 197 EKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSENLP 256
Query: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYY 316
G ++Q+ A+D D G + + +YF T +++FSL TG + DFE Y
Sbjct: 257 PGSPVLQVTATDQDEGVNAEINYYFRS-TAQSTKHMFSLDEKTGMIKNNQSFDFEDVERY 315
Query: 317 EFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQD 376
+V A+DGG + C + +++LD NDN+P I +TS + E++ PG VVAL +D
Sbjct: 316 TMEVEAKDGGG--LSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMVVALFKTRD 373
Query: 377 PDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLS 436
D G NG+V I +PF + S+ N + LVT G LDRE Y++ + A+D G PPLS
Sbjct: 374 LDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVATDRGKPPLS 433
Query: 437 THRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLE 496
+ R+I L ++D+NDN P F Q S+ V V ENN PG + ++ASDPD GLN ISYS++
Sbjct: 434 SSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYSIVA 493
Query: 497 PRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVL 556
++ SS++S++ Q+G V A R+FD+EQ + +QARD G+P LS+ V++R+ V
Sbjct: 494 SDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVG 553
Query: 557 DLNDNAPAVLRPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPD 615
D NDNAP VL P P GS +P S G+L+TKV AVD DSG+NAW+SY +L+A +
Sbjct: 554 DRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASE 613
Query: 616 PSLFAVSRYAGEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVP 674
P LF++ GEVRTA + D Q+L++ V+D G PPLS + TL + ++ ++P
Sbjct: 614 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILP 673
Query: 675 DLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVT--CFPAGTCA 732
DL + + ++ L YL V+L I + + + ++ LR + T CF G C
Sbjct: 674 DLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLSPATWDCFHPGLCV 733
Query: 733 C---LTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVK 789
+ EG P + L I F+ S P S+ M+
Sbjct: 734 KSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLK-----------CSVPLHSNEDMVCS 782
Query: 790 -SPSA---PMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 845
SP A P GE + + P L QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP
Sbjct: 783 VSPGALIPPHGGEDL--TSHPETLT---SQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWP 837
Query: 846 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 905
NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG
Sbjct: 838 NNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPG 897
Query: 906 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 898 SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 801 bits (2068), Expect = 0.0
Identities = 450/934 (48%), Positives = 583/934 (62%), Gaps = 54/934 (5%)
Query: 29 GQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLIKN 88
GQIRY V EE G+FVGN+A+D L+ +L+ + +++ + F ++ SG+L+ N
Sbjct: 29 GQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGRSQLFALNPRSGSLVTAN 88
Query: 89 PIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAAPP 148
IDRE LC SA C++ + E L +Y EVEI D+ND+APRF ++L+L+I E P
Sbjct: 89 RIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAPRFGVEELELKISETTTP 148
Query: 149 GQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSDY 208
G R PL+ A DADVG N++ Y L+ N+HF+LDV++ +DG+ PEL+LE+ LDRE+++ +
Sbjct: 149 GFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKYPELVLERSLDREEEAVH 208
Query: 209 RLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASD 268
LVL A DGG+P SGT+ + V VLD NDNAP F Q YRIS+ E+ G ++ + A+D
Sbjct: 209 HLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISIPENTLVGTRILTVTATD 268
Query: 269 PDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSP 328
D G V YF +P +F L T+G+LT++ LD+E ++E D+ A+DG P
Sbjct: 269 ADEGYYAQVV-YFLEKSPGETSEVFELKSTSGELTIIKDLDYEDATFHEIDIEAQDG--P 325
Query: 329 AMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSLR 388
+ + V +LDVNDNAP +TS ++ E + PGT++ L +V D DSG N +
Sbjct: 326 GLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGLFNVHDRDSGQNAFTTCS 385
Query: 389 IPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNISDV 448
+P+ LPF L+ + N + LVT LDRE S Y+I +TA D GNP LST I L ++D+
Sbjct: 386 LPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGGNPSLSTDAHILLQVADI 445
Query: 449 NDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASSFI 508
NDN P+F + S+ ++PENN G + S+ A DPDS NA ++YS E + SS+I
Sbjct: 446 NDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVTYSFAEDTVQGAPLSSYI 505
Query: 509 SLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVLRP 568
S+N TG ++A RSFDYEQ + LQ V ARD GNPPLSS V++ LFVLD NDNAP +L P
Sbjct: 506 SINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSLSLFVLDQNDNAPEILYP 565
Query: 569 R-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAGE 627
GS + P S G+L+TKV AVD DSG NAW+SY LL+A +P LF+V + GE
Sbjct: 566 AFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHLLKASEPGLFSVGLHTGE 625
Query: 628 VRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPD---LRESSAPR 683
VRTA + D Q LV+ ++D G PPLS +VTL V++ + ++ D L S+ P
Sbjct: 626 VRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAIP- 684
Query: 684 EGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREGL 743
+S LTLYL V++ A+ V + LL+ LR R + L
Sbjct: 685 -NDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLR------------------RWHKSRLL 725
Query: 744 PPSNGILRIQ-----LGSDDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVKSPSAPMAGE 798
S G L +G D F+ H T A +R + P A
Sbjct: 726 QASGGSLTGMQSSHFVGVDGVRAFLQTYSHEVSLT----ADSRKSHLIF---PQPNYADT 778
Query: 799 PV-RPSCPPSDLLYG-------------LEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 844
+ + SC D L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTW
Sbjct: 779 LISQESCEKKDFLSAPQSLLEEEREETFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTW 838
Query: 845 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 904
PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP
Sbjct: 839 PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIP 898
Query: 905 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 899 GSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 796 bits (2055), Expect = 0.0
Identities = 445/919 (48%), Positives = 589/919 (64%), Gaps = 24/919 (2%)
Query: 29 GQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLIKN 88
GQIRY VPEE+ +G+FVGN+++D LD L+ +++ + F ++ SG+L+
Sbjct: 29 GQIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRGRTQLFALNPRSGSLITAG 88
Query: 89 PIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAAPP 148
IDRE LC S C++ + + E +++ E+EI+D+ND+ P+F + L+++I E A P
Sbjct: 89 RIDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEVKINEIAVP 148
Query: 149 GQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSDY 208
G R+PL +A D DVG NS+ SY+LS N HF+LDV+ +G++ PEL+LE+ LDRE+++ +
Sbjct: 149 GARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAH 208
Query: 209 RLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASD 268
LVLTA DGG PPRS T + V+VLD NDNAP F YR+ VLE+ P G L+ + ASD
Sbjct: 209 HLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASD 268
Query: 269 PDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSP 328
PD G +G V + F ++ LF L+ TG++++ LD+E ++YE +++A D G
Sbjct: 269 PDEGINGKVAYKFR-KINEKQTPLFQLNENTGEISIAKSLDYEECSFYEMEIQAEDVG-- 325
Query: 329 AMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSLR 388
A+ L + + DVNDN P + +TS + E++ PGTV+A +SV D DSG NG V
Sbjct: 326 ALLGRTKLLISVEDVNDNRPEVIITSLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVVCY 385
Query: 389 IPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNISDV 448
D+LPF L+ + N + LVT LDRE S Y+I V ASD G PPLST I L+++D+
Sbjct: 386 TRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNITVMASDLGTPPLSTETQIALHVADI 445
Query: 449 NDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASSFI 508
NDNPP+F S+ ++ ENN G + SL A DPDS NA ++YS+ E + SS+I
Sbjct: 446 NDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYSVTEDTLQGAPLSSYI 505
Query: 509 SLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVLRP 568
S+N TG ++A +SFDYEQ + LQ V A D G+PPLSS +++ LFVLD NDNAP +L P
Sbjct: 506 SINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYP 565
Query: 569 R-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAGE 627
GS + P S G+L+TKV AVD DSG NAW+SY+LL+A +P LF+V + GE
Sbjct: 566 ALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGE 625
Query: 628 VRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRE-SSAPREG 685
VRTA + D Q LV+ V+D G PPLS +VTL V++ + V+ +L +
Sbjct: 626 VRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVDPN 685
Query: 686 ESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREGLPP 745
+S LTLYL V++ AI V LL LR +G R G+P
Sbjct: 686 DSSLTLYLVVAVAAISCVFLAFVAVLLGLRLRRWHKSRLLQDSG--------GRLVGVPA 737
Query: 746 SN--GILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVKSPSAPMAGEPVRPS 803
S+ G+ +Q + V + S + P +D M+ S + + S
Sbjct: 738 SHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIFPQPNYAD---MLISQEGCEKNDSLLTS 794
Query: 804 CP----PSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL 859
++ +G +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL
Sbjct: 795 VDFHEYKNEADHG-QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMIL 853
Query: 860 ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG 919
ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG
Sbjct: 854 ASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG 913
Query: 920 KAPAGGNGNKKKSGKKEKK 938
KAPAGGNGNKKKSGKKEKK
Sbjct: 914 KAPAGGNGNKKKSGKKEKK 932
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 795 bits (2053), Expect = 0.0
Identities = 443/924 (47%), Positives = 587/924 (63%), Gaps = 36/924 (3%)
Query: 30 QIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLIKNP 89
QIRY VPEE+++G VGN+++D L+ L+ RR+++ + F ++ SG L+
Sbjct: 30 QIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRGRTQLFSLNPRSGTLVTAGR 89
Query: 90 IDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAAPPG 149
IDRE LC S C+V + + E +++Y E+E+ D+ND AP+F + L+++I E A PG
Sbjct: 90 IDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPKFQAESLEVKINEIAVPG 149
Query: 150 QRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSDYR 209
R+PL +A D DVG NS+ SY+LS N HF+L+V+ +G++ PEL+LE+ LDRE+ + +
Sbjct: 150 ARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPELVLERALDREEATAHH 209
Query: 210 LVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDP 269
LVLTA DGG P RS T + V+VLD NDNAP F Q YR+ VLE+ P G L+ ASD
Sbjct: 210 LVLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVLENVPPGTWLLTATASDL 269
Query: 270 DLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSPA 329
D G +G V + F ++ LF L+ TG+++ LD+E ++YE +++A DGG
Sbjct: 270 DEGINGKVAYKF-WKINEKQSLLFQLNENTGEISTAKSLDYEECSFYEMEIQAEDGG--G 326
Query: 330 MEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSLRI 389
++ + + + DVNDN P +T+TS + E A GTV+ L + D DSG NG V I
Sbjct: 327 LKGWTKVLISVEDVNDNRPEVTITSLFSPVREDAPQGTVILLFNAHDRDSGKNGQVVCSI 386
Query: 390 PDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNISDVN 449
++L F L+++ + + L+TA LDRE S Y+I VTA+D G PPLST I L ++D+N
Sbjct: 387 QENLSFTLENSEEDYYRLLTAQILDREKASEYNITVTATDRGTPPLSTEIHITLQVTDIN 446
Query: 450 DNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASSFIS 509
DNPP+F Q S+ V++PENN G + S+ A DPDS N+ + YSL E + S+++S
Sbjct: 447 DNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAEDTIQGSPLSTYVS 506
Query: 510 LNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVLRPR 569
+N TG ++A SFDYEQ + LQ +V A D G+PPLSS V++RLFVLD NDNAP +L P
Sbjct: 507 INSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVLDQNDNAPEILYPA 566
Query: 570 -ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAGEV 628
GS + P S G+L+TKV AVD DSG NAW+SY+L +A +P LF+V + GEV
Sbjct: 567 LPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASEPGLFSVGLHTGEV 626
Query: 629 RTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPREGE- 686
RTA + D Q LV+ V+D G PPLS +VTL V++ + ++ DL P + E
Sbjct: 627 RTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDILADLGSLQIPADLEA 686
Query: 687 SRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREGLPPS 746
S LTLYL V++ + V + LL+ LR + S G+P S
Sbjct: 687 SDLTLYLVVAVAVVSCVFLTFVITLLALRLR--------HWHSSHLLRATSDGLAGVPTS 738
Query: 747 NGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVKSPS------APMAGEPV 800
+ + G D F+ T A +R S ++ P+ + + E
Sbjct: 739 HFV-----GVDGVRAFLQTYSQEFSLT----ADSRK-SHLIFPQPNYADTLISQQSCEKN 788
Query: 801 RPSCPPSDLLYGLE------QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 854
P C D + +E QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML
Sbjct: 789 EPLCVSVDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEML 848
Query: 855 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 914
QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA
Sbjct: 849 QAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA 908
Query: 915 GKRDGKAPAGGNGNKKKSGKKEKK 938
GKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 909 GKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 793 bits (2047), Expect = 0.0
Identities = 445/932 (47%), Positives = 588/932 (63%), Gaps = 50/932 (5%)
Query: 29 GQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGALLIKN 88
G+I Y V EE+ +G+FVG++A+D L+ L+ R +++ + F ++ SG+L+
Sbjct: 29 GRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRSGSLVTAG 88
Query: 89 PIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGEAAPP 148
IDRE +C SA C+V + E + +Y +VEI+D+ND+ PRF ++++++I E P
Sbjct: 89 RIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVKIMENTAP 148
Query: 149 GQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSDY 208
G RFPL +A D DVG+NS+ SY+LS N HF+L V+ D + PEL+LE+ LDRE++ +
Sbjct: 149 GVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPELVLERVLDREEERVH 208
Query: 209 RLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASD 268
LVLTA DGG+PPRS TA ++V+V+DVND+ P F Y+++V E+ P G L+ ++A D
Sbjct: 209 HLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLTVHAID 268
Query: 269 PDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARDGGSP 328
D G +G VT+ F TP ++ +F L+ TG+++ L LD+E +YE +V+A+DG P
Sbjct: 269 LDEGVNGEVTYSFRKITP-KLPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQDG--P 325
Query: 329 AMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSLR 388
+ + +LDVNDNAP +T+TS ++PE GTV+AL +QD DSG NG+V+
Sbjct: 326 GSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNGEVTCT 385
Query: 389 IPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLNISDV 448
IP++LPF L+ + N + LVT LDRE S Y+I + A+D G PPLS IF+ ++D
Sbjct: 386 IPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFMQVADT 445
Query: 449 NDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSASSFI 508
NDNPP+F S+ V++ ENN G + + A D DS NA I+YSL E + SS++
Sbjct: 446 NDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAPVSSYV 505
Query: 509 SLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPAVLRP 568
S+N TG ++A +SFDYEQ + LQ V A D G+PPLSS +++ LFVLD NDN P +L P
Sbjct: 506 SINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPPEILYP 565
Query: 569 R-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAGE 627
GS + P S G+L+TKV AVD DSG NAW+SY LL+A +P LFAV Y GE
Sbjct: 566 ALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLLKASEPGLFAVGLYTGE 625
Query: 628 VRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPREGE 686
VRTA + D Q LV+ V+D G PPLS +VTL V++ + V+ DL S P +G
Sbjct: 626 VRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADL-GSLEPSDGP 684
Query: 687 SR--LTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREGLP 744
LTLYL V++ + V + LL+ LR R + L
Sbjct: 685 YNYDLTLYLVVAVATVSCVFLAFVLVLLALRLR------------------RWHKSRLLQ 726
Query: 745 PSNGILRIQ-----LGSDDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVKSPSAPMAGEP 799
S G L +G D F+ H T A +R + + M
Sbjct: 727 ASEGGLANVPTSHFVGMDGVQAFLQTYSHEVSLT----ADSRKSHLIFPQPNYVDMLIS- 781
Query: 800 VRPSCPPSDLLY-------------GLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 846
+ SC +D L ++QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 782 -QESCEKNDSLLTSVDFQECKENLPSIQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 840
Query: 847 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 906
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 841 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 900
Query: 907 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 786 bits (2031), Expect = 0.0
Identities = 445/936 (47%), Positives = 578/936 (61%), Gaps = 40/936 (4%)
Query: 18 LFLFYHLGYVCGQ-IRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
LFL L V + IRY +PEE G+ VGN+A+D L R L+V E ++ F
Sbjct: 19 LFLLSLLDQVLSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAE--KKFFT 76
Query: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
V ++G LL+ + IDRE +CG ++C++ E V E PL + V I D+ND+ P F +
Sbjct: 77 VSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFSQN 136
Query: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
+LEI E A G F LE AQD DVG NS+ Y LS + HF+L K+ DGS PEL+L
Sbjct: 137 ITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPELVL 196
Query: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
+ PLDRE+Q + LVLTAVDGG P RS T ++RV V D NDN P F Q YR++V E+ P
Sbjct: 197 KAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAENLP 256
Query: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYY 316
AG ++++ A D D G + + + F + VR LF L TG+LT +G LDFE + Y
Sbjct: 257 AGSSVLKVMAIDMDEGINAEIIYAFI-NIGKEVRQLFKLDSKTGELTTIGELDFEERDSY 315
Query: 317 EFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQD 376
V A+DGG +C +++D+ D NDNAP IT+ SE + E AE GT VALI D
Sbjct: 316 TIGVEAKDGGHHTA--YCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHD 373
Query: 377 PDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLS 436
DSG NG++ ++ + PF + +N + LVT G LDRE Y++ +TA+D GNPPLS
Sbjct: 374 LDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLS 433
Query: 437 THRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSL-- 494
+ +TI L+I DVNDN P F Q S+ V V ENN PG + + ASDPD G N L+SY +
Sbjct: 434 SSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVA 493
Query: 495 --LEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVR 552
LEPR SS++S++ ++G V A R+FD+EQ + + +QARD+G+P LS+ V++R
Sbjct: 494 SDLEPRE----LSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLR 549
Query: 553 LFVLDLNDNAPAVLRPRARP-GSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLL 611
+ V D NDNAP VL P P GS +P S G+L+TKV AVD DSGYNAW+SY ++
Sbjct: 550 VLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIV 609
Query: 612 EAPDPSLFAVSRYAGEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTH 670
+A +P LF++ GEVRTA + + Q+L++ V+D G PLS +V L + +
Sbjct: 610 QASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQ 669
Query: 671 PVVPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVT------ 724
+ PDL + P + ++ L +L V+L I + + + +S LR ++ T
Sbjct: 670 EIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYFQP 729
Query: 725 --CFPAGTCACLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRS 782
CF T S R LP S S+ KF+++ + P +
Sbjct: 730 GVCFKTVPGVLPTYSERT--LPYSYNPCAASHSSNTEFKFLNI--KAENAAPQDLLCDEA 785
Query: 783 DSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTG 842
F +P P ++ +QAPPNTDWRFSQAQRPGTSGSQNGDDTG
Sbjct: 786 SWFESNDNPEMPSNSGNLQ------------KQAPPNTDWRFSQAQRPGTSGSQNGDDTG 833
Query: 843 TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVY 902
TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVY
Sbjct: 834 TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVY 893
Query: 903 IPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
IPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 894 IPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precursor
[Homo sapiens]
Length = 878
Score = 678 bits (1750), Expect = 0.0
Identities = 365/746 (48%), Positives = 492/746 (65%), Gaps = 13/746 (1%)
Query: 25 GYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGAL 84
G+V GQ+RY V EES+ GT VGNVAQD L L +RRLQ+ E N R+F + L SGAL
Sbjct: 25 GWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGAL 84
Query: 85 LIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGE 144
+ IDRE+LCG S SC++P++ VTE PLE+ R EVEI+D+ND++P F + ++ I E
Sbjct: 85 AVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISE 144
Query: 145 AAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREK 204
+A G RFPL+ AQD DVG+N++S Y LS N HF+L+VK DG PEL+LE+ LDRE
Sbjct: 145 SAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREA 204
Query: 205 QSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQL 264
Q+ ++LVLTAVDGG P RSGT + V VLD+NDNAP FQ S R+ + E+AP G +L++L
Sbjct: 205 QARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRL 264
Query: 265 NASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARD 324
NA+DPD G +G + + F HT + VRNLF L P++G + +LGP+DFE +YE RARD
Sbjct: 265 NATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARD 324
Query: 325 GGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGD 384
G PAME HC ++VD+ DVNDNAP + + S + ES GTVV L +V+D DSG NG+
Sbjct: 325 QGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGE 384
Query: 385 VSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLN 444
VSL I LPF +K + N +SL+T+ PLDREA S Y I + ASDAG+P L H TI LN
Sbjct: 385 VSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLN 443
Query: 445 ISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSA 504
ISDVNDN P F Q+ + ++ EN PG LLC++AASDPD+G NA ++YS++ + + A
Sbjct: 444 ISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPA 503
Query: 505 SSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPA 564
SSF+ +NP+ G + A R+FDYE Q LQ V RD G+PPL + ++ +FVLD NDNAPA
Sbjct: 504 SSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPA 563
Query: 565 VLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLL-EAPDPSLFAVSR 623
VL PR PQ LP S G L+TKVTAVD D+G+NAW+SY LL ++ P LF VS
Sbjct: 564 VLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVST 623
Query: 624 YAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAP 682
+ GEVRTA + D Q++V++V+D+G P LS++ T+L+ LE++ +P +
Sbjct: 624 HTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIH 683
Query: 683 REGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREG 742
S LTLYL V+L + +S +F L +KCL+G A G G C RR++
Sbjct: 684 PPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADG----DGGGGQC---CRRQDS 736
Query: 743 LPP---SNGILRIQLGSDDPIKFVDV 765
P +Q+ SD +K+++V
Sbjct: 737 PSPDFYKQSSPNLQVSSDGTLKYMEV 762
>gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precursor
[Homo sapiens]
Length = 1007
Score = 627 bits (1617), Expect = e-179
Identities = 372/965 (38%), Positives = 552/965 (57%), Gaps = 52/965 (5%)
Query: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQV--AGEVNQRH 74
LL L G Q+RY VPEE G VGNVA+ L+ L L++ G + R+
Sbjct: 30 LLLLLLLPGPAASQLRYSVPEEQAPGALVGNVARALGLELRRLGPGCLRINHLGAPSPRY 89
Query: 75 FRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFP 134
+DL SGAL + IDREALC C++ LE + P+ + EVEI+D+ND++PRFP
Sbjct: 90 LELDLTSGALFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAVEVEILDINDNSPRFP 149
Query: 135 RQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPEL 194
R L++ E+ PG RF +E AQD DVG+NS+ +Y LS +EHF LD+K + S V EL
Sbjct: 150 RPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEHFELDLKPLQENSKVLEL 209
Query: 195 LLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLES 254
+L K LDRE+ + + LVLTAVDGG P RSGTA++ V VLD NDN+PAF QS+YR+ + E
Sbjct: 210 VLRKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVLDTNDNSPAFDQSTYRVQLRED 269
Query: 255 APAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESEN 314
+P G ++++LNASDPD G +G + + S +T DR R LFS+ +TG++ ++G LD+E +
Sbjct: 270 SPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEAS 329
Query: 315 YYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISV 374
Y+ V+A D G M HC + VD++DVNDNAP + +T +PE+A P T+VA++SV
Sbjct: 330 SYQIYVQATDRGPVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVLSV 389
Query: 375 QDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPP 434
D DSG N VSL + LPF L + F N ++LV +GPLDRE + Y+I VTA+D G P
Sbjct: 390 NDQDSGPNRKVSLGLEATLPFRL-NGFGNSYTLVVSGPLDRERVAVYNITVTATDGGIPQ 448
Query: 435 LSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSL 494
L++ RT+ + ISD+NDNPPSF + S+ +++ ENN PG LLC++ A+DPD NA ++YSL
Sbjct: 449 LTSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAEVTYSL 508
Query: 495 LEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLF 554
LE + + +S++S+N +G+++A SFDYE+ + V+A+D+G+PPLSSTVT ++
Sbjct: 509 LEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGSPPLSSTVTANVY 568
Query: 555 VLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAP 614
V+D+ND+AP +L P + S + +P + AG+L+TKV A+D DSG NAW+ Y L +
Sbjct: 569 VVDMNDHAPHILYPTSTNSSAAFEMVPRTAPAGYLVTKVIAMDSDSGQNAWLFYHLAQTS 628
Query: 615 DPSLFAVSRYAGEVRTAVPIPADLPPQ-KLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVV 673
D LF V + GE+RT + + L +VV+D+G P LS SV + V++ + ++
Sbjct: 629 DLDLFKVELHTGEIRTTRKMGDESGSTFNLTVVVRDNGEPSLSASVAITVAVVDRVSKIL 688
Query: 674 PDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVAL-LSKCLRGAACGVTCFPAGTCA 732
PD + S +TLYL ++L + F+ + + L + KC R A G C G C
Sbjct: 689 PDTQRHVKSPRTYSEITLYLIIALSTVSFIFLLTIIILSIIKCYRYTAYGTACC-GGFCG 747
Query: 733 CLTRSRRREGLPPSNGI-LRIQLGSDDPIKFVDVGGH-----SHGCTPLASAPTRSDSFM 786
RS +N I RI G F++V G+ ++ +A + SD+FM
Sbjct: 748 VRERSPAELYKQANNNIDARIPHGLKVQPHFIEVRGNGSLTKTYCYKACLTAGSGSDTFM 807
Query: 787 MVKSPSAPMAG-EPVRPSCPPSDLLYGL-------------------EQAPPNTDWRFSQ 826
+ + G + + S L G E PN DWR+S
Sbjct: 808 FYNTGAQTGPGPSGAQAAVTDSRNLTGQSGQNAGNLIILKNEAVSQNEPRQPNPDWRYSA 867
Query: 827 AQRPGTSGSQNGDDTGT------WPNNQFDTEMLQAMILASAS---EAADGSSTLGGGAG 877
+ R G S + ++ G P+ Q+ T ++SA+ EA + S +G G
Sbjct: 868 SLRAGMHSSVHLEEAGILRAGPGGPDQQWPT-------VSSATPEPEAGEVSPPVGAGVN 920
Query: 878 TMGLSARYGPQFTLQHVP-DYRQNVYIPGSNATLT---NAAGKRDGKAPAGGNGNKKKSG 933
+ + +YGP Q P + IPGS A ++ + K+ G K+++
Sbjct: 921 SNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETK 980
Query: 934 KKEKK 938
KK+KK
Sbjct: 981 KKKKK 985
>gi|14165431 protocadherin alpha subfamily C, 2 isoform 2 precursor
[Homo sapiens]
Length = 884
Score = 607 bits (1564), Expect = e-173
Identities = 330/780 (42%), Positives = 482/780 (61%), Gaps = 12/780 (1%)
Query: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQV--AGEVNQRH 74
LL L G Q+RY VPEE G VGNVA+ L+ L L++ G + R+
Sbjct: 30 LLLLLLLPGPAASQLRYSVPEEQAPGALVGNVARALGLELRRLGPGCLRINHLGAPSPRY 89
Query: 75 FRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFP 134
+DL SGAL + IDREALC C++ LE + P+ + EVEI+D+ND++PRFP
Sbjct: 90 LELDLTSGALFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAVEVEILDINDNSPRFP 149
Query: 135 RQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPEL 194
R L++ E+ PG RF +E AQD DVG+NS+ +Y LS +EHF LD+K + S V EL
Sbjct: 150 RPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEHFELDLKPLQENSKVLEL 209
Query: 195 LLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLES 254
+L K LDRE+ + + LVLTAVDGG P RSGTA++ V VLD NDN+PAF QS+YR+ + E
Sbjct: 210 VLRKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVLDTNDNSPAFDQSTYRVQLRED 269
Query: 255 APAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESEN 314
+P G ++++LNASDPD G +G + + S +T DR R LFS+ +TG++ ++G LD+E +
Sbjct: 270 SPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEEAS 329
Query: 315 YYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISV 374
Y+ V+A D G M HC + VD++DVNDNAP + +T +PE+A P T+VA++SV
Sbjct: 330 SYQIYVQATDRGPVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVLSV 389
Query: 375 QDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPP 434
D DSG N VSL + LPF L + F N ++LV +GPLDRE + Y+I VTA+D G P
Sbjct: 390 NDQDSGPNRKVSLGLEATLPFRL-NGFGNSYTLVVSGPLDRERVAVYNITVTATDGGIPQ 448
Query: 435 LSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSL 494
L++ RT+ + ISD+NDNPPSF + S+ +++ ENN PG LLC++ A+DPD NA ++YSL
Sbjct: 449 LTSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAEVTYSL 508
Query: 495 LEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLF 554
LE + + +S++S+N +G+++A SFDYE+ + V+A+D+G+PPLSSTVT ++
Sbjct: 509 LEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGSPPLSSTVTANVY 568
Query: 555 VLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAP 614
V+D+ND+AP +L P + S + +P + AG+L+TKV A+D DSG NAW+ Y L +
Sbjct: 569 VVDMNDHAPHILYPTSTNSSAAFEMVPRTAPAGYLVTKVIAMDSDSGQNAWLFYHLAQTS 628
Query: 615 DPSLFAVSRYAGEVRTAVPIPADLPPQ-KLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVV 673
D LF V + GE+RT + + L +VV+D+G P LS SV + V++ + ++
Sbjct: 629 DLDLFKVELHTGEIRTTRKMGDESGSTFNLTVVVRDNGEPSLSASVAITVAVVDRVSKIL 688
Query: 674 PDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVAL-LSKCLRGAACGVTCFPAGTCA 732
PD + S +TLYL ++L + F+ + + L + KC R A G C G C
Sbjct: 689 PDTQRHVKSPRTYSEITLYLIIALSTVSFIFLLTIIILSIIKCYRYTAYGTACC-GGFCG 747
Query: 733 CLTRSRRREGLPPSNGI-LRIQLGSDDPIKFVDVGGH-----SHGCTPLASAPTRSDSFM 786
RS +N I RI G F++V G+ ++ +A + SD+FM
Sbjct: 748 VRERSPAELYKQANNNIDARIPHGLKVQPHFIEVRGNGSLTKTYCYKACLTAGSGSDTFM 807
>gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 600 bits (1547), Expect = e-171
Identities = 374/949 (39%), Positives = 536/949 (56%), Gaps = 54/949 (5%)
Query: 12 WRWATLLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVN 71
WR LL L GQ+ Y VPEE++ GTFVG +AQD L+ L R +VA + +
Sbjct: 12 WRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKRH 71
Query: 72 QRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAP 131
+ V L +G L + + IDRE LCG SA C + LE + + PL+++ +VE+ DVND+ P
Sbjct: 72 RDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVKDVNDNPP 131
Query: 132 RFPRQQLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLV 191
F + L + E+ P RFPLE A DADVG+NS+ +YRLSS+++F LDV ++D + +
Sbjct: 132 VFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFMLDVNSKNDENKL 191
Query: 192 PELLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISV 251
EL+L K LDRE + L LTA DGG P +GT +L V+VLDVNDNAP F+QS Y + +
Sbjct: 192 VELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEVRI 251
Query: 252 LESAPAGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFE 311
E+A G +I+LNASDPD G +G +++ F+ V + FS+ TG++ + G LDFE
Sbjct: 252 FENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTGEIVIRGNLDFE 311
Query: 312 SENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVAL 371
EN Y+ + A D G P M HC++ V +LD NDN P I +TS + E A+ GTV+AL
Sbjct: 312 QENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVIAL 371
Query: 372 ISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAG 431
ISV D DSG+NG V+ + H+PF L S F+N +SLV LDRE S+Y+++VTA D G
Sbjct: 372 ISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSAYELVVTARDGG 431
Query: 432 NPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALIS 491
+P L ++ + ++DVNDN P+F Q + VFV ENN PG + +++A D D+ NAL+S
Sbjct: 432 SPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVS 491
Query: 492 YSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTV 551
YSL+E R + S SS+IS++ ++G V+A + D+E+ + LQF+V ARD G PPL S VT+
Sbjct: 492 YSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTL 551
Query: 552 RLFVLDLNDNAPAVLRPR-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQL 610
++FVLD NDNAPA+L PR G + +P SVGAGH++ KV AVD DSGYNAW+SY+L
Sbjct: 552 QVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDADSGYNAWLSYEL 611
Query: 611 L-EAPDPSL-FAVSRYAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEE 667
A P + F V Y GE+ T V AD P +L+++VKD G P L+ + T+LVSL E
Sbjct: 612 QPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSLVE 671
Query: 668 DTHPVVPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFP 727
R+S+ E+ L ++AIC VS + LL +
Sbjct: 672 SGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVSSLLVLTLL------------LYT 719
Query: 728 AGTCACL-TRSRRREGLPP---SNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRSD 783
A C+ L T R G P S+ + P + G P ++D
Sbjct: 720 ALRCSALPTEGGCRAGKPTLVCSSAVGSWSYSQQQPQRVCSGEG-----------PPKTD 768
Query: 784 SFMMVKSPSAPM-AGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTG 842
+M SP P G ++ +GL+ PN DWR+S + R G S + ++ G
Sbjct: 769 --LMAFSPCLPPDLGSVDVGEEQDLNVDHGLKPRQPNPDWRYSASLRAGMHSSVHLEEAG 826
Query: 843 T------WPNNQFDTEMLQAMILASAS---EAADGSSTLGGGAGTMGLSARYGPQFTLQH 893
P+ Q+ T ++SA+ EA + S +G G + + +YGP Q
Sbjct: 827 ILRAGPGGPDQQWPT-------VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQS 879
Query: 894 VP-DYRQNVYIPGSNATLT---NAAGKRDGKAPAGGNGNKKKSGKKEKK 938
P + IPGS A ++ + K+ G K+++ KK+KK
Sbjct: 880 GPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKKK 928
>gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor
[Homo sapiens]
Length = 837
Score = 592 bits (1525), Expect = e-169
Identities = 312/699 (44%), Positives = 457/699 (65%), Gaps = 6/699 (0%)
Query: 18 LFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRV 77
+FL G+ QIRY VPEE+++G+FVGN+++D L+ L+ R +++ + F V
Sbjct: 19 IFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQLFAV 78
Query: 78 DLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQ 137
+ SG+L+ IDRE LC +SC + +E + E L++Y EVEI+D+ND+AP F +
Sbjct: 79 NPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQEDE 138
Query: 138 LDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLE 197
+++++ E A PG RF L A+D DVG NS+ SY+LS N +F+L ++ R+DG+ PEL+LE
Sbjct: 139 VEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPELVLE 198
Query: 198 KPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPA 257
LDREK++ + L+LTA+DGG+P R G +RV VLDVND+ P F QS YR+SV E+ +
Sbjct: 199 GSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISS 258
Query: 258 GMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYE 317
G ++ +NA+DPD G +G V + F + + +F L TG++ + G LDFE +YE
Sbjct: 259 GTRVLMVNATDPDEGINGEVMYSFR-NMESKASEIFQLDSQTGEVQVRGSLDFEKYRFYE 317
Query: 318 FDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDP 377
+++ +DGG + ++ + ++DVNDNAP IT+TS + ++ E++ PGTV+AL++VQD
Sbjct: 318 MEIQGQDGGG--LFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNVQDQ 375
Query: 378 DSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLST 437
DSG NG VS IP+HLPF L+ + N + L+T+ LDRE SY+I +TA+D G+PPLS
Sbjct: 376 DSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPLSA 435
Query: 438 HRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEP 497
++LN++D NDNPP F S+ ++PENN G + S+ A DPDS NAL++YSL +
Sbjct: 436 ETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSLTDD 495
Query: 498 RNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLD 557
+ V SS++S+N TG ++A +SFDYEQ + L+ V ARD G+PPLSS V++ LFVLD
Sbjct: 496 TVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLD 555
Query: 558 LNDNAPAVLRPR-ARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDP 616
NDNAP +L P GS + P S G+L+TKV AVD DSG NAW+SY+LL+A +P
Sbjct: 556 QNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEP 615
Query: 617 SLFAVSRYAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPD 675
LFAV + GEVRTA + D Q LV+ V+D G PPLS +VTL V++ + V+ D
Sbjct: 616 GLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLAD 675
Query: 676 LRESSAPREGE-SRLTLYLAVSLVAICFVSFGSFVALLS 713
L + E S L+LYL V++ A+ + + LL+
Sbjct: 676 LGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLA 714
>gi|14717401 protocadherin alpha subfamily C, 1 isoform 1 precursor
[Homo sapiens]
Length = 963
Score = 590 bits (1522), Expect = e-168
Identities = 371/954 (38%), Positives = 524/954 (54%), Gaps = 52/954 (5%)
Query: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
+L L+ G GQ+ Y VPEE++ G VGN++ D L ++S+R + + +F
Sbjct: 8 VLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFG 67
Query: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
VDL SG L+++ P DRE LC A+C++ + V E PLE+++ + ++D ND++P FP
Sbjct: 68 VDLPSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAG 127
Query: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
+ L I E PG RF L AQD D GSN I SY LS ++HF LD+ R DGS PEL+L
Sbjct: 128 DVQLHIPEFLTPGARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVL 187
Query: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
EK LDRE+++ + LVLTA DGG P RSG A++ + V+D NDNAP F++S YR V E+AP
Sbjct: 188 EKALDREQRATHLLVLTARDGGLPARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAP 247
Query: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTL---LGPLDFESE 313
G VL ++ A DPD G +G V + S T +R+ F +HP +G++ + LGP + E
Sbjct: 248 NGTVLFRVQALDPDEGSNGEVQYSLSNSTQAELRHRFHVHPKSGEVQVAASLGPPETLLE 307
Query: 314 NYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALIS 373
Y E ARD G + L V++ DVND+AP + + +PE A PGTV+AL S
Sbjct: 308 AYIE----ARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVPEDAAPGTVIALFS 363
Query: 374 VQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNP 433
V+D D SNG V + PF L ++F N +SL+ GPLDRE S Y +++TASD+G+P
Sbjct: 364 VKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDSGSP 423
Query: 434 PLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYS 493
PLST RTI ++++DVNDN P+F Q E+FV ENN PG L + A DPD G N L+SY
Sbjct: 424 PLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYE 483
Query: 494 LLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRL 553
LL+ + SASS +++ +GA+ A SFD+EQ + F+V+ RD G PP S+TVT+ L
Sbjct: 484 LLDVISEGPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINL 543
Query: 554 FVLDLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEA 613
FV+D NDN P +L P R GS+ + +P S GHL+TKV A D DSG NAW+SY + A
Sbjct: 544 FVVDRNDNYPVILFPLPRNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRA 603
Query: 614 PDPSLFAVSRYAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPV 672
D SLF +S GE+RTA + +P D Q++V+VV+D G PPLS+SVTL V L +
Sbjct: 604 SDSSLFRISANIGELRTARLVLPTDAVKQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQL 663
Query: 673 VPDLRESSAPREGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCA 732
+PD + P S LYL ++L I F+ G CL C G CA
Sbjct: 664 LPDFEDVWEPGGQLSAQNLYLVIALACISFLFLG--------CLLFFVCTKLHQSPGCCA 715
Query: 733 CLTRSRRREGLPPSNGILRIQLGSDDPIKFVDVGGHSHGCTPLASAPTRSDSFMMVKSPS 792
+ R E L + ++ + I V S AS SD+ ++
Sbjct: 716 -QSCCRSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLLLRGE 774
Query: 793 ---------APMAGEPVRPSCPPSDLLYG----LEQAP--PNTDWRFSQAQRPGTSGSQN 837
A G + SC G + P PN DWR+S + R G S +
Sbjct: 775 YNAADLRNLATGVGLNLPISCIQIRNRKGDHANVNAMPRQPNPDWRYSASLRAGMHSSVH 834
Query: 838 GDDTGT------WPNNQFDTEMLQAMILASAS---EAADGSSTLGGGAGTMGLSARYGPQ 888
++ G P+ Q+ T ++SA+ EA + S +G G + + +YGP
Sbjct: 835 LEEAGILRAGPGGPDQQWPT-------VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPG 887
Query: 889 FTLQHVP-DYRQNVYIPGSNATLT---NAAGKRDGKAPAGGNGNKKKSGKKEKK 938
Q P + IPGS A ++ + K+ G K+++ KK+KK
Sbjct: 888 NPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKKK 941
>gi|14277677 protocadherin gamma subfamily C, 3 isoform 2 precursor
[Homo sapiens]
Length = 863
Score = 588 bits (1515), Expect = e-167
Identities = 305/685 (44%), Positives = 424/685 (61%), Gaps = 3/685 (0%)
Query: 17 LLFLFYHLGYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFR 76
+L L L I Y +PEE ++G VGNV + LD SLSARR +V ++R F
Sbjct: 19 VLLLLGALNKASTVIHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVSGASRRFFE 78
Query: 77 VDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQ 136
V+ ++G + + + +DRE LCG SC V LE V E PLE++ EV I D+ND+ P FP Q
Sbjct: 79 VNRETGEMFVNDRLDREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQ 138
Query: 137 QLDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLL 196
++ LEI EA PG RFPLE A D DVGSNS+ +Y LS NE+FAL V+ R D + EL+L
Sbjct: 139 EMKLEISEAVAPGTRFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVL 198
Query: 197 EKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAP 256
E+ LDRE++ +LVLTA+DGG P S + + + VLD NDNAP F QS YR VLE AP
Sbjct: 199 ERALDREREPSLQLVLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAP 258
Query: 257 AGMVLIQLNASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYY 316
+G ++Q+ A+D D GP+G + + F H VR LF+L TG LT+ G LDFE +
Sbjct: 259 SGTRVVQVLATDLDEGPNGEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLH 318
Query: 317 EFDVRARDGGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQD 376
E ++A+D G+ HC + V+++DVNDNAP ITVTS +PE A GTV+AL+SV D
Sbjct: 319 EIYIQAKDKGANPEGAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTD 378
Query: 377 PDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLS 436
D+G NG V+ +P LPF+L S+ +N F+L T+ LDRE Y++ +TA DAG P LS
Sbjct: 379 LDAGENGLVTCEVPPGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLS 438
Query: 437 THRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLE 496
+ + +SD+NDNPP Q S++V++ ENN PG + +L+ DPD+ NA +S+ LLE
Sbjct: 439 ALTIVRVQVSDINDNPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLE 498
Query: 497 PRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVL 556
+ ++N G V + DYE + + D G P L++ ++V +FV
Sbjct: 499 QGAETGLVGRYFTINRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVT 558
Query: 557 DLNDNAPAVLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLLEAPDP 616
D NDNAP VL P RPG + LP AGHL+++V D D+G+NAW+SY LL +P+
Sbjct: 559 DRNDNAPQVLYP--RPGGSSVEMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLLGSPNQ 616
Query: 617 SLFAVSRYAGEVRTAVPI-PADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPD 675
SLFA+ + G++ TA P+ D P Q L +++KD+G P LST+ TL VS+ ED+ +
Sbjct: 617 SLFAIGLHTGQISTARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAE 676
Query: 676 LRESSAPREGESRLTLYLAVSLVAI 700
SAPRE + LT YL +SL+ +
Sbjct: 677 FPSGSAPREQKKNLTFYLLLSLILV 701
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,429,724
Number of Sequences: 37866
Number of extensions: 1925518
Number of successful extensions: 12286
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 5006
Number of HSP's gapped (non-prelim): 750
length of query: 938
length of database: 18,247,518
effective HSP length: 112
effective length of query: 826
effective length of database: 14,006,526
effective search space: 11569390476
effective search space used: 11569390476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.