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Search of human proteins with 11128023
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11128023 protocadherin gamma subfamily C, 5 isoform 1
precursor [Homo sapiens]
(944 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs... 1887 0.0
gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precurs... 1634 0.0
gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precurs... 926 0.0
gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 856 0.0
gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precurs... 855 0.0
gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precurs... 854 0.0
gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precurs... 851 0.0
gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precurs... 846 0.0
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 840 0.0
gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precurs... 839 0.0
gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precurs... 839 0.0
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 838 0.0
gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precurs... 833 0.0
gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precurs... 831 0.0
gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precur... 830 0.0
gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precurs... 828 0.0
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 821 0.0
gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precurs... 815 0.0
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs... 814 0.0
gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precurs... 812 0.0
gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precurs... 811 0.0
gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precurs... 811 0.0
gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precurs... 809 0.0
gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precurso... 689 0.0
gi|14277682 protocadherin gamma subfamily C, 4 isoform 2 precurs... 678 0.0
gi|14165431 protocadherin alpha subfamily C, 2 isoform 2 precurs... 664 0.0
gi|14589916 protocadherin 10 isoform 1 precursor [Homo sapiens] 635 0.0
gi|14589914 protocadherin 10 isoform 2 precursor [Homo sapiens] 629 e-180
gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens] 621 e-177
gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens] 614 e-175
>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
[Homo sapiens]
Length = 944
Score = 1887 bits (4887), Expect = 0.0
Identities = 944/944 (100%), Positives = 944/944 (100%)
Query: 1 MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLL 60
MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLL
Sbjct: 1 MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLL 60
Query: 61 SRRLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVE 120
SRRLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVE
Sbjct: 61 SRRLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVE 120
Query: 121 VEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSL 180
VEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSL
Sbjct: 121 VEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSL 180
Query: 181 NVKTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAP 240
NVKTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAP
Sbjct: 181 NVKTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAP 240
Query: 241 TFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSG 300
TFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSG
Sbjct: 241 TFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSG 300
Query: 301 AIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVL 360
AIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVL
Sbjct: 301 AIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVL 360
Query: 361 ESTPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHY 420
ESTPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHY
Sbjct: 361 ESTPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHY 420
Query: 421 IIELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASD 480
IIELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASD
Sbjct: 421 IIELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASD 480
Query: 481 PDTGDNARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSG 540
PDTGDNARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSG
Sbjct: 481 PDTGDNARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSG 540
Query: 541 SPPLHANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAG 600
SPPLHANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAG
Sbjct: 541 SPPLHANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAG 600
Query: 601 HNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTA 660
HNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTA
Sbjct: 601 HNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTA 660
Query: 661 TVLLVLEDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGN 720
TVLLVLEDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGN
Sbjct: 661 TVLLVLEDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGN 720
Query: 721 ADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSP 780
ADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSP
Sbjct: 721 ADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSP 780
Query: 781 ASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSG 840
ASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSG
Sbjct: 781 ASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSG 840
Query: 841 SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV 900
SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV
Sbjct: 841 SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV 900
Query: 901 PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 901 PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
>gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precursor
[Homo sapiens]
Length = 878
Score = 1634 bits (4231), Expect = 0.0
Identities = 823/827 (99%), Positives = 823/827 (99%), Gaps = 3/827 (0%)
Query: 1 MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLL 60
MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLL
Sbjct: 1 MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLL 60
Query: 61 SRRLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVE 120
SRRLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVE
Sbjct: 61 SRRLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVE 120
Query: 121 VEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSL 180
VEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSL
Sbjct: 121 VEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSL 180
Query: 181 NVKTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAP 240
NVKTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAP
Sbjct: 181 NVKTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAP 240
Query: 241 TFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSG 300
TFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSG
Sbjct: 241 TFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSG 300
Query: 301 AIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVL 360
AIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVL
Sbjct: 301 AIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVL 360
Query: 361 ESTPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHY 420
ESTPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHY
Sbjct: 361 ESTPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHY 420
Query: 421 IIELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASD 480
IIELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASD
Sbjct: 421 IIELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASD 480
Query: 481 PDTGDNARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSG 540
PDTGDNARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSG
Sbjct: 481 PDTGDNARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSG 540
Query: 541 SPPLHANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAG 600
SPPLHANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAG
Sbjct: 541 SPPLHANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAG 600
Query: 601 HNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTA 660
HNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTA
Sbjct: 601 HNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTA 660
Query: 661 TVLLVLEDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGN 720
TVLLVLEDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGN
Sbjct: 661 TVLLVLEDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGN 720
Query: 721 ADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSP 780
ADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSP
Sbjct: 721 ADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSP 780
Query: 781 ASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQ---QAPP 824
ASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQ APP
Sbjct: 781 ASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQVRGSAPP 827
>gi|11128025 protocadherin gamma subfamily C, 4 isoform 1 precursor
[Homo sapiens]
Length = 938
Score = 926 bits (2392), Expect = 0.0
Identities = 500/929 (53%), Positives = 634/929 (68%), Gaps = 24/929 (2%)
Query: 25 GWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGAL 84
G+V GQ+RY V EES+ GT VGNVAQD L L +RRLQ+ E N R+F + L SGAL
Sbjct: 25 GYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGAL 84
Query: 85 AVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISE 144
+ IDRE+LCG S SC++P++ VTE PLE+ R EVEI+D+ND++P F + ++ I E
Sbjct: 85 LIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGE 144
Query: 145 SAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREA 204
+A G RFPL+ AQD DVG+N++S Y LS N HF+L+VK DG PEL+LE+ LDRE
Sbjct: 145 AAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREK 204
Query: 205 QARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRL 264
Q+ ++LVLTAVDGG P RSGT + V VLD+NDNAP FQ S R+ + E+AP G +L++L
Sbjct: 205 QSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQL 264
Query: 265 NATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARD 324
NA+DPD G +G + + F HT + VRNLF L P++G + +LGP+DFE +YE RARD
Sbjct: 265 NASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARD 324
Query: 325 QGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGE 384
G PAME HC ++VD+ DVNDNAP + + S + ES GTVV L +V+D DSG NG+
Sbjct: 325 GGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGD 384
Query: 385 VSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLN 443
VSL I LPF +K + N +SL+T+ PLDREA S Y I + ASDAG+P L H TI LN
Sbjct: 385 VSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLN 444
Query: 444 ISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPA 503
ISDVNDN P F Q+ + ++ EN PG LLC++AASDPD+G NA ++YS++ + + A
Sbjct: 445 ISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSA 504
Query: 504 SSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPA 563
SSF+ +NP+ G + A R+FDYE Q LQ V RD G+PPL + ++ +FVLD NDNAPA
Sbjct: 505 SSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPA 564
Query: 564 VLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVST 623
VL PR PQ LP S G L+TKVTAVD D+G+NAW+SY LL ++ P LF VS
Sbjct: 565 VLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLL-EAPDPSLFAVSR 623
Query: 624 HTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIH 683
+ GEVRTA + D Q++V++V+D+G P LS++ T+L+ LE++ +P +
Sbjct: 624 YAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAP 682
Query: 684 PPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADG----DGGGGQC---CRRQDS 736
S LTLYL V+L + +S +F L +KCL+G A G G C RR++
Sbjct: 683 REGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREG 742
Query: 737 PSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQ 796
P +Q+ SD +K+++V SH S + F + V+
Sbjct: 743 LPP---SNGILRIQLGSDDPIKFVDV-----GGHSHGCTPLASAPTRSDSF-----MMVK 789
Query: 797 QPTA-LALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 855
P+A +A EP + L +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
Sbjct: 790 SPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF 849
Query: 856 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 915
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
Sbjct: 850 DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT 909
Query: 916 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 910 LTNAAGKRDGKAPAGGNGNKKKSGKKEKK 938
>gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor
[Homo sapiens]
Length = 935
Score = 856 bits (2211), Expect = 0.0
Identities = 479/947 (50%), Positives = 619/947 (65%), Gaps = 44/947 (4%)
Query: 15 VLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRY 74
+LC+ G+ + Q+RYSV EE+E G+ VGN+++DLGL+ +L R +++ S +
Sbjct: 16 LLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSRGKTQL 75
Query: 75 FSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFA 134
F+++ SG+L +IDRE LC +SC L ++++ E L++ VEVEI+D+NDN+PSF
Sbjct: 76 FAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQ 135
Query: 135 TPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPEL 194
E E+++SE A GARF L +A+DPDVG N++ Y LSPN++FSL ++ DG PEL
Sbjct: 136 EDEVEIKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPEL 195
Query: 195 VLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPEN 254
VLE LDRE +A H L+LTA+DGG P R G I V+VLD+ND+ P F SV RV +PEN
Sbjct: 196 VLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPEN 255
Query: 255 APIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESR 314
GT +L +NATDPDEG NG++ YSF + S+A +F LD +G + V G +DFE+ R
Sbjct: 256 ISSGTRVLMVNATDPDEGINGEVMYSFRNMESKA-SEIFQLDSQTGEVQVRGSLDFEKYR 314
Query: 315 FYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNV 374
FYE+ + +D G + + + V DVNDNAPE+ + S N +LE++P GTV+ L NV
Sbjct: 315 FYEMEIQGQDGG--GLFTTTTMLITVVDVNDNAPEITITSSINSILENSPPGTVIALLNV 372
Query: 375 RDRDSGRNGEVSLDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLASDAGSPS 433
+D+DSG NG+VS I LPF++ K N+Y L+TS+ LDRE Y I L A+D GSP
Sbjct: 373 QDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPP 432
Query: 434 LHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSI 493
L + LN++D NDN P F Y+AYI EN P G+ + +V A DPD+ NA +TYS+
Sbjct: 433 LSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTYSL 492
Query: 494 VGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVF 553
+ VQG P SS+V +N G ++A ++FDYE + L++ V RDSG PPL +N SL +F
Sbjct: 493 TDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLF 552
Query: 554 VLDENDNAPAVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQ 612
VLD+NDNAP +L+P + S L PRSA PG LVTKV AVD D+G NAWLSY LL +
Sbjct: 553 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLL-K 611
Query: 613 STAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPE 672
++ PGLF V HTGEVRTARALL+ D+ Q +VV V+D+G P LS+T T+ + + D PE
Sbjct: 612 ASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPE 671
Query: 673 EMPKSSDF-LIHPPERSDLTLYLIVALATVSLLSLVTFTFLSA---------KCLQGNAD 722
+ + E SDL+LYL+VA+A VS + LV L A + LQ +
Sbjct: 672 VLADLGSLESLANSETSDLSLYLVVAVAAVSCIFLVFVIVLLALRLWRWHKSRLLQASEG 731
Query: 723 GDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYM-----EVTLRPTDSQSHCYRTC 777
G G P+ F V DG ++ EV+L +SH
Sbjct: 732 GLAG---------MPTSHF---------VGVDGVQAFLQTYSHEVSLIADSQKSHLI--- 770
Query: 778 FSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPG 837
F + G +P +A + I + + +QQAPPNTDWRFSQAQRPG
Sbjct: 771 FPQPNYGDTLISQESCEKSEPLLIAEDSAIILGKCDPTS--NQQAPPNTDWRFSQAQRPG 828
Query: 838 TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL 897
TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL
Sbjct: 829 TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL 888
Query: 898 QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 889 QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 935
>gi|11056024 protocadherin gamma subfamily A, 5 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 855 bits (2208), Expect = 0.0
Identities = 481/925 (52%), Positives = 607/925 (65%), Gaps = 29/925 (3%)
Query: 28 SGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAVN 87
SGQ+RYS+ EE + G+ VGN+A+DLGL+ +L R +++ S + F+L+ SG+L
Sbjct: 28 SGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRGRTQLFALNPRSGSLVTA 87
Query: 88 QKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESAA 147
+IDRE LC S C++ ++ E+ +++ VEVEI+D+NDN P F E +++++E+AA
Sbjct: 88 GRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPRFRDEELKVKVNENAA 147
Query: 148 SGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQAR 207
+G R L A+D DVG N++ Y LS N HFSL+V + DG+ +PELVLEQ LDRE +
Sbjct: 148 AGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYPELVLEQPLDREKETV 207
Query: 208 HQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNAT 267
H L+LTA+DGG P SGTT I V VLD NDNAP F S V +PEN P+GT LL L AT
Sbjct: 208 HDLLLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPENIPVGTRLLMLTAT 267
Query: 268 DPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQ 327
DPDEG NG+L YSF + E + F LD + G I L +D+EESRFY + A+D G
Sbjct: 268 DPDEGINGKLTYSFRNE-EEKISETFQLDSNLGEISTLQSLDYEESRFYLMEVVAQDGG- 325
Query: 328 PAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVSL 387
A+ + V V DVNDNAPEV+L SL + + E GTV+ LF+V D DSG NGE++
Sbjct: 326 -ALVASAKVVVTVQDVNDNAPEVILTSLTSSISEDCLPGTVIALFSVHDGDSGENGEIAC 384
Query: 388 DISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLNISD 446
I +LPF+++ S +N+Y LLT++ LDRE TS Y I L D G+P L I L ++D
Sbjct: 385 SIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNITLTVMDHGTPPLSTESHIPLKVAD 444
Query: 447 VNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPASSF 506
VNDN P F Q Y+ + EN P G + +V A DPD+GDNAR+TYS+ + QGAP SS+
Sbjct: 445 VNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYSLAEDTFQGAPLSSY 504
Query: 507 VYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPAVLH 566
V +N + G ++A R+FDYE L+ LQ+ V DSG+PPL +N SL +FVLD+NDN P +L+
Sbjct: 505 VSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVLDQNDNTPEILY 564
Query: 567 PRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTHT 625
P + S L PRSA PG LVTKV AVD D+G NAWLSY LL +++ PGLF V HT
Sbjct: 565 PALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLL-KASEPGLFAVGLHT 623
Query: 626 GEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIH-P 684
GEVRTARALL+ D+ Q +VV V D+G P LS+T TV + + D P+ +
Sbjct: 624 GEVRTARALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDILADLGSIKTPID 683
Query: 685 PERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRRQDSPSPDFYKQ 744
PE DLTLYL+VA+A VS + L L L+ + R P+ F
Sbjct: 684 PEDLDLTLYLVVAVAAVSCVFLAFVIVLLVLRLRRWHKSRLLQAEGSRLAGVPASHF--- 740
Query: 745 SSPNLQVSSDGTLKYM-----EVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPT 799
V DG ++ EV+L +SH P + +D T L S ++
Sbjct: 741 ------VGVDGVRAFLQTYSHEVSLTADSRKSHL----IFPQPNYAD-TLLSEESCEKSE 789
Query: 800 ALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 859
L + + +N R QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM
Sbjct: 790 PLLMSD---KVDANKEERRVQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEM 846
Query: 860 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 919
LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA
Sbjct: 847 LQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA 906
Query: 920 AGKRDGKAPAGGNGNKKKSGKKEKK 944
AGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 907 AGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056026 protocadherin gamma subfamily A, 4 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 854 bits (2206), Expect = 0.0
Identities = 477/928 (51%), Positives = 609/928 (65%), Gaps = 39/928 (4%)
Query: 30 QLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAVNQK 89
Q+ YSV EE E G++VGN+A+DLGL +L R +++ S + F+L+ SG L +
Sbjct: 30 QILYSVFEEQEEGSVVGNIAKDLGLAPRELAERGVRIVSRGRTQLFALNPRSGTLVTAGR 89
Query: 90 IDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESAASG 149
IDRE LC S +C+ ++++ E ++++RVEVEI+D+NDN PSF T +RE++++E+ G
Sbjct: 90 IDREELCDRSPNCVTNLEILLEDTVKILRVEVEIIDVNDNPPSFGTEQREIKVAENENPG 149
Query: 150 ARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQARHQ 209
ARFPL A DPDVG N++ Y L+ N +FSL+V++ DG +PELVLE+ LDRE +A H
Sbjct: 150 ARFPLPEAFDPDVGVNSLQGYQLNSNGYFSLDVQSGADGIKYPELVLERALDREEEAVHH 209
Query: 210 LVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNATDP 269
LVLTA DGG P RSGT I +I++D NDNAP F V + EN P+GT LL + ATDP
Sbjct: 210 LVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVSVRENVPVGTRLLTVKATDP 269
Query: 270 DEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQPA 329
DEG NG + YSF + + LF L+ SG I +LG +D+E+S FY+I A D P
Sbjct: 270 DEGANGDVTYSFRK-VRDKISQLFQLNSLSGDITILGGLDYEDSGFYDIDVEAHDG--PG 326
Query: 330 MEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVSLDI 389
+ + V V D NDNAPEV + SL + V ES+ GTV+ LFNV D DSG NG V+ I
Sbjct: 327 LRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVIALFNVHDSDSGGNGLVTCSI 386
Query: 390 SPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLNISDVN 448
+LPF + K N+Y LLT + LDRE S Y I + A+D G+P L I L + D+N
Sbjct: 387 PDNLPFTLEKTYGNYYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDIN 446
Query: 449 DNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPASSFVY 508
DN P F Y+AYI EN P G+ + ++ A DPD+GDNAR+TYS+ + QGAP SS+V
Sbjct: 447 DNPPTFPHASYSAYIPENNPRGASILSMTAQDPDSGDNARITYSLAEDTFQGAPLSSYVS 506
Query: 509 VNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPAVLHPR 568
+N G ++A +FDYE + LQ+++ DSG PPL +N SL +FVLD+NDN P +L+P
Sbjct: 507 INSNTGILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPT 566
Query: 569 PDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTHTGE 627
+ S L PRSA G LVTKV AVD D+G NAWLSYSLL +S+ PGLF V HTGE
Sbjct: 567 FPTDGSTGVELAPRSADSGYLVTKVVAVDRDSGQNAWLSYSLL-KSSEPGLFAVGLHTGE 625
Query: 628 VRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPE------EMPKSSDFL 681
VRTARALL+ D+ Q++VV+V+D+G P LS+T T+ + + D P+ + S+D
Sbjct: 626 VRTARALLDRDALKQRLVVVVQDHGQPPLSATVTLTVAVADSIPDVLADLGSLKPSAD-- 683
Query: 682 IHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRRQDSPSPDF 741
P+ S LTLYL+VA+A VS + L T L A L+ + R P+ F
Sbjct: 684 ---PDDSGLTLYLVVAVAAVSCVFLAFVTVLLALKLRRWHKSRLLHAEGSRLAGVPASHF 740
Query: 742 YKQSSPNLQVSSDGTLKYM-----EVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQ 796
V DG ++ EV+L +SH FS S T + S +
Sbjct: 741 ---------VGVDGVRAFLQTYSHEVSLTADSRKSHLI---FSQPSYAD--TLISRESCE 786
Query: 797 QPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 856
+ L + D + ++ + QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD
Sbjct: 787 KSEPLLITQDLLETKGDP---NLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 843
Query: 857 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 916
TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL
Sbjct: 844 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 903
Query: 917 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
TNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|14589880 protocadherin gamma subfamily A, 3 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 851 bits (2198), Expect = 0.0
Identities = 479/947 (50%), Positives = 616/947 (65%), Gaps = 46/947 (4%)
Query: 15 VLCML--SLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENG 72
+LC L +LC G SGQ+RYSV EE + G+ VGN+A DLGL+ +L R +++ S
Sbjct: 15 LLCALLGTLCETG--SGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRGRT 72
Query: 73 RYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPS 132
+ FSL+ SG+L ++IDRE LC CL+ + ++ E L++ VE+EI D+NDN+P+
Sbjct: 73 QLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPN 132
Query: 133 FATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFP 192
F T E E++I E G RFP+ +A DPDVG N++ Y LSPN +FSL V ++ +G +P
Sbjct: 133 FPTEELEIKIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYP 192
Query: 193 ELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIP 252
ELVLE+ LDRE + HQLVL A DGG P SG I VIVLD NDN P F RV +
Sbjct: 193 ELVLERALDREKKEIHQLVLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVW 252
Query: 253 ENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEE 312
EN P+GT LL +NATDPDEG N Q+ Y D + +F L+ SG + +L +D+E+
Sbjct: 253 ENVPVGTRLLTVNATDPDEGFNAQVSYIL-DKMPGKIAEIFHLNSVSGEVSILKSLDYED 311
Query: 313 SRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLF 372
+ FYEI A+D P + I V V DVNDNAPE+ + SL + V E VG + L
Sbjct: 312 AMFYEIKIEAQDG--PGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALI 369
Query: 373 NVRDRDSGRNGEVSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGS 431
+V DRDSG+NG+V + + +LPF+++ S + +Y L+T+ LDRE S Y I L ASD GS
Sbjct: 370 DVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNISLRASDGGS 429
Query: 432 PSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTY 491
P L I L++ D+NDN P F Y+AYI EN P G+ + +V A DPD+ +NAR+TY
Sbjct: 430 PPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITY 489
Query: 492 SIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLH 551
++ + +QGAP SSFV +N G ++A R+FDYE + L+++V DSG+PPL +N SL+
Sbjct: 490 ALTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLN 549
Query: 552 VFVLDENDNAPAVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSYSLL 610
+FVLD+NDNAP +L+P + S L PRSA PG LVTKV AVD D+G NAWLSY LL
Sbjct: 550 LFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLL 609
Query: 611 PQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDED 670
+++ PGLF V HTGEVRTARALL+ D+ Q +VV V+D+G P LS+T T+ + + D
Sbjct: 610 -KASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRI 668
Query: 671 PEEMPKSSDFLIHP---PERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQG-----NAD 722
P+ + + P P SDLTLYL+VA+A VS + L L A L+
Sbjct: 669 PDILADLGS--LEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRLRRWHKSRLLQ 726
Query: 723 GDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYM-----EVTLRPTDSQSHCYRTC 777
GGG +P F V +DG ++ EV+L +SH
Sbjct: 727 ASGGG-----LASTPGSHF---------VGADGVRAFLQTYSHEVSLTADSRKSHL---- 768
Query: 778 FSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPG 837
P + +D T + S ++ L + D + + ++ QQAPPNTDWRFSQAQRPG
Sbjct: 769 IFPQPNYAD-TLISQESCEKSEPLLITQDLLEMKGDS--NLLQQAPPNTDWRFSQAQRPG 825
Query: 838 TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL 897
TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL
Sbjct: 826 TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL 885
Query: 898 QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 886 QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128037 protocadherin gamma subfamily B, 1 isoform 1 precursor
[Homo sapiens]
Length = 927
Score = 846 bits (2185), Expect = 0.0
Identities = 467/942 (49%), Positives = 614/942 (65%), Gaps = 48/942 (5%)
Query: 18 MLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSL 77
+LSL C G +S Q+RY++ EE G+ VG +A+DLGL + +L +R+L++ +E+ YF++
Sbjct: 19 LLSLFC-GAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAED---YFNV 74
Query: 78 SLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPE 137
SL SG L VN +IDRE +CG C L + V E+P+ + V V I D+NDN+P F
Sbjct: 75 SLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVIQDINDNAPRFVAKG 134
Query: 138 REMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLE 197
++ I ESA G +F LDSAQD DV N++ YT++PN +FSL+ K DG +P L+LE
Sbjct: 135 IDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLE 194
Query: 198 QQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPI 257
+ LDRE Q+ H+L+LTA+DGG P SGTT I + V D NDNAP F V RV + EN P
Sbjct: 195 KPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPW 254
Query: 258 GTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYE 317
GT +LR+ ATD DEG N ++ Y+F + S +LF L+P++G I G +DFEE+ Y
Sbjct: 255 GTSVLRVMATDQDEGINAEITYAFLN--SPISTSLFNLNPNTGDITTNGTLDFEETSRYV 312
Query: 318 IHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDR 377
+ A+D G HC +Q+++ D NDNAPEV S +N + E + +GTV+ L VRD+
Sbjct: 313 LSVEAKDGG--VHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDK 370
Query: 378 DSGRNGEVSLDISPDLPFQIKP-SENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHK 436
DSG+NG V+ ++PF+++ S+N+Y L+ + L+RE T+ Y + ++A+D G P+L
Sbjct: 371 DSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIATDKGKPALSS 430
Query: 437 HLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGN 496
+I L+ISD+NDNAP F+Q Y ++ EN PPG+ + V+ASDPD G N R++YSI+ +
Sbjct: 431 RTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILAS 490
Query: 497 QVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLD 556
++ S+V V+P+ G +FAQR FD+E L+ ++ + RD GSP L AN SL V V D
Sbjct: 491 DLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGD 550
Query: 557 ENDNAPAVLHPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTA 615
NDNAP VL+P + SA +PR+A PG LVTKV AVDAD+GHNAWLSY +L Q++
Sbjct: 551 LNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVL-QASE 609
Query: 616 PGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMP 675
PGLF + TGEVRTARAL + D+ Q+++V VRD G P LS+TAT+ L+ D E +P
Sbjct: 610 PGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLP 669
Query: 676 KSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGG----GQCC 731
SD +++L YL+VALA +S+L L+ A L+ ++ D G G C
Sbjct: 670 DLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTEGCFQTGLCS 729
Query: 732 RRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLR 791
+ P+ S+GTL Y Y C + S ++F L
Sbjct: 730 KSGPGVPPNH-----------SEGTLPYS-------------YNLCIASHSAKTEFNSLN 765
Query: 792 --PLSVQQPTALALEPDAIRSRSNTLRE-------RSQQAPPNTDWRFSQAQRPGTSGSQ 842
P L +P + SN + S QAPPNTDWRFSQAQRPGTSGSQ
Sbjct: 766 LTPEMAPPQDLLCDDPSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQ 825
Query: 843 NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD 902
NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD
Sbjct: 826 NGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPD 885
Query: 903 YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 886 YRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 927
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 840 bits (2170), Expect = 0.0
Identities = 476/947 (50%), Positives = 607/947 (64%), Gaps = 40/947 (4%)
Query: 12 KWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEEN 71
K +LC L W +GQ+RYSV EE + G+ VGN+A+DLGL+ L + +++ S
Sbjct: 12 KLVLLCFLLATLWEARAGQIRYSVREEIDRGSFVGNIAKDLGLEPLALAEQGVRIVSRGR 71
Query: 72 GRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSP 131
+ F+L+ SG+L +IDRE LC S CLL ++ E L + VEVEI D+NDN+P
Sbjct: 72 SQLFALNPRSGSLVTANRIDREELCAQSAPCLLNFNILLEDKLTIYSVEVEITDINDNAP 131
Query: 132 SFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPF 191
F E E++ISE+ G R PL +A D DVG N + Y L+PN HFSL+V+ DG +
Sbjct: 132 RFGVEELELKISETTTPGFRIPLKNAHDADVGENALQKYALNPNDHFSLDVRRGADGNKY 191
Query: 192 PELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGI 251
PELVLE+ LDRE +A H LVL A DGG P SGT+ I V VLD NDNAP F R+ I
Sbjct: 192 PELVLERSLDREEEAVHHLVLVASDGGDPVLSGTSRICVKVLDANDNAPVFTQPEYRISI 251
Query: 252 PENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFE 311
PEN +GT +L + ATD DEG Q+ Y F + + +F L +SG + ++ +D+E
Sbjct: 252 PENTLVGTRILTVTATDADEGYYAQVVY-FLEKSPGETSEVFELKSTSGELTIIKDLDYE 310
Query: 312 ESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGL 371
++ F+EI A+D P + + V V DVNDNAPE + S + V E + GT++GL
Sbjct: 311 DATFHEIDIEAQDG--PGLLTRAKVIVTVLDVNDNAPEFYMTSATSSVSEDSLPGTIIGL 368
Query: 372 FNVRDRDSGRNGEVSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAG 430
FNV DRDSG+N + + DLPF+++ S +N+Y L+T++ LDRE S Y I L A D G
Sbjct: 369 FNVHDRDSGQNAFTTCSLPEDLPFKLEKSVDNYYRLVTTRALDREQFSFYNITLTAKDGG 428
Query: 431 SPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLT 490
+PSL I L ++D+NDNAP F++ Y+ YI EN P G+ + +V A DPD+ DNA +T
Sbjct: 429 NPSLSTDAHILLQVADINDNAPAFSRTSYSTYIPENNPRGASVFSVTAHDPDSNDNAHVT 488
Query: 491 YSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSL 550
YS + VQGAP SS++ +N + G ++A R+FDYE L+ LQ+ V RDSG+PPL +N SL
Sbjct: 489 YSFAEDTVQGAPLSSYISINSDTGVLYALRSFDYEQLRDLQVWVIARDSGNPPLSSNVSL 548
Query: 551 HVFVLDENDNAPAVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSYSL 609
+FVLD+NDNAP +L+P + S L PRSA PG LVTKV AVD D+G NAWLSY L
Sbjct: 549 SLFVLDQNDNAPEILYPAFPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYHL 608
Query: 610 LPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDE 669
L +++ PGLF V HTGEVRTARALL+ D+ Q +VV ++D+G P LS+T T+ + + D
Sbjct: 609 L-KASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAIQDHGQPPLSATVTLTVAVADR 667
Query: 670 DPEEMPKSSDFLIHP---PERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADG--- 723
P+ + + P P SDLTLYL+VA+A VS + L L A L+
Sbjct: 668 IPDILADLGS--LEPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLL 725
Query: 724 DGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYM-----EVTLRPTDSQSHCYRTCF 778
GG Q S V DG ++ EV+L +SH
Sbjct: 726 QASGGSLTGMQSSHF------------VGVDGVRAFLQTYSHEVSLTADSRKSHL----I 769
Query: 779 SPASDGSDFTFLRPLSVQQPTALALEPDAIRS-RSNTLRERSQQAPPNTDWRFSQAQRPG 837
P + +D T + S ++ L+ + R T SQQAPPNTDWRFSQAQRPG
Sbjct: 770 FPQPNYAD-TLISQESCEKKDFLSAPQSLLEEEREETF---SQQAPPNTDWRFSQAQRPG 825
Query: 838 TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL 897
TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL
Sbjct: 826 TSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTL 885
Query: 898 QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 886 QHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|8850232 protocadherin gamma subfamily A, 12 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 839 bits (2168), Expect = 0.0
Identities = 478/943 (50%), Positives = 612/943 (64%), Gaps = 58/943 (6%)
Query: 26 WVSG--QLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGA 83
W +G Q+RYSV EE E G+ VG++++DLGL+ +L R +++ + F+L+ SG+
Sbjct: 24 WETGCTQIRYSVPEELEKGSRVGDISRDLGLEPRELAERGVRIIPRGRTQLFALNPRSGS 83
Query: 84 LAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRIS 143
L +IDRE LC + C L + ++ E +++ VEVE+ D+NDN+P F E E++IS
Sbjct: 84 LVTAGRIDREELCMGAIKCQLNLDILMEDKVKIYGVEVEVRDINDNAPYFRESELEIKIS 143
Query: 144 ESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDRE 203
E+AA+ RFPL A DPD+G N++ Y LSPN+HFSL V+ DG +PELVL++ LDRE
Sbjct: 144 ENAATEMRFPLPHAWDPDIGKNSLQSYELSPNTHFSLIVQNGADGSKYPELVLKRALDRE 203
Query: 204 AQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLR 263
+A H LVLTA DGG P R+GT I V+VLD NDNAP F R +PEN +GT LL
Sbjct: 204 EKAAHHLVLTASDGGDPVRTGTARIRVMVLDANDNAPAFAQPEYRASVPENLALGTQLLV 263
Query: 264 LNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARAR 323
+NATDPDEG N ++ YSF + + +F LD +SG I +G +D EES FY++ +A
Sbjct: 264 VNATDPDEGVNAEVRYSFR-YVDDKAAQVFKLDCNSGTISTIGELDHEESGFYQMEVQAM 322
Query: 324 DQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNG 383
D + + V DVNDNAPEV+L SLA+ V E++P GT++ L NV D+DS NG
Sbjct: 323 DNA--GYSARAKVLITVLDVNDNAPEVVLTSLASSVPENSPRGTLIALLNVNDQDSEENG 380
Query: 384 EVSLDISPDLPFQIKPSE-NHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRL 442
+V I +LPF+++ S N+YSL+T LDRE Y I + A+D G+P L I L
Sbjct: 381 QVICFIQGNLPFKLEKSYGNYYSLVTDIVLDREQVPSYNITVTATDRGTPPLSTETHISL 440
Query: 443 NISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAP 502
N++D NDN P F Q Y+AYI EN P G L +V A DPD +NA++TYS+ N +QGA
Sbjct: 441 NVADTNDNPPVFPQASYSAYIPENNPRGVSLVSVTAHDPDCEENAQITYSLAENTIQGAS 500
Query: 503 ASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAP 562
SS+V +N + G ++A +FDYE + LQ+ V RD+G PPL +N SL +FVLD+NDNAP
Sbjct: 501 LSSYVSINSDTGVLYALSSFDYEQFRDLQVKVMARDNGHPPLSSNVSLSLFVLDQNDNAP 560
Query: 563 AVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLV 621
+L+P + S L PRSA PG LVTKV AVD D+G NAWLSY LL +++ PGLF V
Sbjct: 561 EILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLL-KASEPGLFSV 619
Query: 622 STHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPE--------E 673
HTGEVRTARALL+ D+ Q +VV V+D+G P LS+T T+ + + D P+ E
Sbjct: 620 GLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQVLADLGSLE 679
Query: 674 MPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQG-------NADGDGG 726
P +S E SDLTLYL+VA+A VS + L L A L+ A G G
Sbjct: 680 SPANS-------ETSDLTLYLVVAVAAVSCVFLAFVILLLALRLRRWHKSRLLQASGGGL 732
Query: 727 GGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYM-----EVTLRPTDSQSHCYRTCFSPA 781
G +P+ F V DG ++ EV+L +SH P
Sbjct: 733 TG-------APASHF---------VGVDGVQAFLQTYSHEVSLTTDSRKSHL----IFPQ 772
Query: 782 SDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGS 841
+ +D + S ++ L L D++ S+ + +QAPPNTDWRFSQAQRPGTSGS
Sbjct: 773 PNYADMLVSQE-SFEKSEPLLLSGDSVFSKDS--HGLIEQAPPNTDWRFSQAQRPGTSGS 829
Query: 842 QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP 901
QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP
Sbjct: 830 QNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVP 889
Query: 902 DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 890 DYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056065 protocadherin gamma subfamily A, 6 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 839 bits (2168), Expect = 0.0
Identities = 474/957 (49%), Positives = 613/957 (64%), Gaps = 43/957 (4%)
Query: 3 PKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSR 62
P+ PQ + + +L +L WG + Q+RYS+ EE E G+ VGN+ +DLGL+ +L
Sbjct: 4 PQRHPQRSEQVLLLTLLGTL-WGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEH 62
Query: 63 RLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVE 122
+++ S + FSL+ +G+L +IDRE LC S CL+ ++ E L L VEVE
Sbjct: 63 GVRIVSRGRMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVE 122
Query: 123 ILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNV 182
I+D+NDN+P F E E++I E+AA +RFPL DPDVG N++ + LS NSHFS++V
Sbjct: 123 IVDINDNTPRFLKEELEVKILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDV 182
Query: 183 KTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTF 242
++ G +PELVLE LDRE +A ++LVLTA+DGG P RS I V VLD+NDN P F
Sbjct: 183 QSEAHGPKYPELVLEGTLDREGEAVYRLVLTAMDGGDPVRSSVAQILVTVLDVNDNTPMF 242
Query: 243 QSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAI 302
V RV +PEN P+GT +L + ATD DEG +G++ YSF T E + +F L+ +G I
Sbjct: 243 TQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYSFVKIT-EKISQIFCLNVLTGEI 301
Query: 303 HVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLES 362
+D+E+S FYE+ ARD P + + + + DVNDN PEV++ S + + ES
Sbjct: 302 STSANLDYEDSSFYELGVEARDG--PGLRDRAKVLITILDVNDNVPEVVVTSGSRTIAES 359
Query: 363 TPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSE-NHYSLLTSQPLDREATSHYI 421
P GTV+ LF V DRDSG NG V+ I LPF+++ S N+Y L+T+ LDRE Y
Sbjct: 360 APPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYN 419
Query: 422 IELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDP 481
I + A+D G+P L I LN++D NDN P F Y+ Y+LEN P G+ + +V A DP
Sbjct: 420 ITVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDP 479
Query: 482 DTGDNARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGS 541
D NA+++YS+ + +QGAP SS+V +N + G ++A R+FDYE L+ LQ+ V DSG
Sbjct: 480 DVDQNAQVSYSLAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGD 539
Query: 542 PPLHANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAG 600
PPL +N SL +FVLD+NDNAP +L+P + S L PRSA PG LVTKV AVD D+G
Sbjct: 540 PPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSG 599
Query: 601 HNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTA 660
NAWLSY LL +++ PGLF V HTGEVRTARALL+ D+ Q +VV V+D+G P LS+T
Sbjct: 600 QNAWLSYRLL-KASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATV 658
Query: 661 TVLLVLEDEDPEEMPKSSDFLIHP---PERSDLTLYLIVALATVSLLSLVTFTFLSAKCL 717
T+ + + D P+ + + P P SDLTLYL+VA+A VS + L L A L
Sbjct: 659 TLTVAVADRIPDILADLGS--LEPSAKPNDSDLTLYLVVAVAAVSCVFLAFVIVLLALRL 716
Query: 718 QG-----NADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYM-----EVTLRPT 767
Q GGG P F V +G ++ EV+L
Sbjct: 717 QRWHKSRLLQASGGG-----LASMPGSHF---------VGVEGVRAFLQTYSHEVSLTAD 762
Query: 768 DSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTD 827
+SH P + +D T + S ++ L + D + ++ + QQAPPNTD
Sbjct: 763 SRKSHL----IFPQPNYAD-TLINQESYEKSEPLLITQDLLETKGEP--RQLQQAPPNTD 815
Query: 828 WRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGL 887
WRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGL
Sbjct: 816 WRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGL 875
Query: 888 SARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
SARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 876 SARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 838 bits (2166), Expect = 0.0
Identities = 478/961 (49%), Positives = 614/961 (63%), Gaps = 46/961 (4%)
Query: 1 MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLL 60
M T QL G+ +LC L W + Q+RYSV EE+E G +VGN+++DL L+ +L
Sbjct: 1 MAAPTKCQLRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELA 60
Query: 61 SRRLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVE 120
RR+++ S + FSL+ SG L +IDRE LC S CL+ +V+ E ++L +E
Sbjct: 61 ERRVRIVSRGRTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIE 120
Query: 121 VEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSL 180
+E+ D+ND++P F E++I+E A GAR+PL A DPDVG N++ Y LSPN HFSL
Sbjct: 121 IEVTDINDSAPKFQAESLEVKINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSL 180
Query: 181 NVKTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAP 240
NV+T +G PELVLE+ LDRE H LVLTA DGG P RS T I V VLD NDNAP
Sbjct: 181 NVQTGDNGAINPELVLERALDREEATAHHLVLTASDGGEPRRSSTVRIHVTVLDTNDNAP 240
Query: 241 TFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSG 300
F + RV + EN P GT LL A+D DEG NG++ Y F +E LF L+ ++G
Sbjct: 241 VFAQRIYRVKVLENVPPGTWLLTATASDLDEGINGKVAYKFWK-INEKQSLLFQLNENTG 299
Query: 301 AIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVL 360
I +D+EE FYE+ +A D G ++G + + V DVNDN PEV + SL +PV
Sbjct: 300 EISTAKSLDYEECSFYEMEIQAEDGG--GLKGWTKVLISVEDVNDNRPEVTITSLFSPVR 357
Query: 361 ESTPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSE-NHYSLLTSQPLDREATSH 419
E P GTV+ LFN DRDSG+NG+V I +L F ++ SE ++Y LLT+Q LDRE S
Sbjct: 358 EDAPQGTVILLFNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASE 417
Query: 420 YIIELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAAS 479
Y I + A+D G+P L + I L ++D+NDN P F+Q Y+ Y+ EN G+ + +V A
Sbjct: 418 YNITVTATDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAY 477
Query: 480 DPDTGDNARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDS 539
DPD+ +N+R+ YS+ + +QG+P S++V +N + G ++A +FDYE + LQ+ V DS
Sbjct: 478 DPDSNENSRVIYSLAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDS 537
Query: 540 GSPPLHANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDAD 598
GSPPL +N SL +FVLD+NDNAP +L+P + S L PRSA PG LVTKV AVD D
Sbjct: 538 GSPPLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRD 597
Query: 599 AGHNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSS 658
+G NAWLSY L +++ PGLF V HTGEVRTARALL+ D+ Q +VV V+D+G P LS+
Sbjct: 598 SGQNAWLSYRLF-KASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSA 656
Query: 659 TATVLLVLEDEDPEEMPKSSDFLIHPP-ERSDLTLYLIVALATVS---------LLSLVT 708
T T+ + + D P+ + I E SDLTLYL+VA+A VS LL+L
Sbjct: 657 TVTLTVAIADSIPDILADLGSLQIPADLEASDLTLYLVVAVAVVSCVFLTFVITLLALRL 716
Query: 709 FTFLSAKCLQGNADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYM-----EVT 763
+ S+ L+ +DG G P+ F V DG ++ E +
Sbjct: 717 RHWHSSHLLRATSDGLAG---------VPTSHF---------VGVDGVRAFLQTYSQEFS 758
Query: 764 LRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAP 823
L +SH P + +D T + S ++ L + D+ +T QAP
Sbjct: 759 LTADSRKSHL----IFPQPNYAD-TLISQQSCEKNEPLCVSVDSKFPIEDT--PLVPQAP 811
Query: 824 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG 883
PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG
Sbjct: 812 PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAG 871
Query: 884 TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK 943
TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK
Sbjct: 872 TMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEK 931
Query: 944 K 944
K
Sbjct: 932 K 932
>gi|14270484 protocadherin gamma subfamily A, 8 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 833 bits (2153), Expect = 0.0
Identities = 472/951 (49%), Positives = 618/951 (64%), Gaps = 31/951 (3%)
Query: 3 PKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSR 62
P++ P+ G+ +LC L W GQ+RYSV EE++ G+ VGN+++DLGL L
Sbjct: 4 PQSRPR-RGELILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLAKH 62
Query: 63 RLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVE 122
+++ S + F+L+ SG+L +IDRE LC S CL+ + + E +L VE+E
Sbjct: 63 GVRIVSRGRTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVEIE 122
Query: 123 ILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNV 182
I+D+NDN+P F + E++I+E A GAR+PL A DPDVG N++ Y LSPN HFSL+V
Sbjct: 123 IIDINDNNPKFQVEDLEVKINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDV 182
Query: 183 KTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTF 242
+T +G PELVLE+ LDRE +A H LVLTA DGG P RS T I V VLD NDNAP F
Sbjct: 183 QTGDNGAINPELVLERALDREEEAAHHLVLTASDGGKPPRSSTVRIHVTVLDTNDNAPVF 242
Query: 243 QSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAI 302
+ RV + EN P GT LL + A+DPDEG NG++ Y F +E LF L+ ++G I
Sbjct: 243 PHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYKF-RKINEKQTPLFQLNENTGEI 301
Query: 303 HVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLES 362
+ +D+EE FYE+ +A D G A+ G + + V DVNDN PEV++ SL +PVLE+
Sbjct: 302 SIAKSLDYEECSFYEMEIQAEDVG--ALLGRTKLLISVEDVNDNRPEVIITSLFSPVLEN 359
Query: 363 TPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYI 421
+ GTV+ +V D+DSG+NG+V +LPF+++ S N+Y L+T + LDRE S Y
Sbjct: 360 SLPGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYN 419
Query: 422 IELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDP 481
I ++ASD G+P L I L+++D+NDN P F Y+AYILEN G+ + ++ A DP
Sbjct: 420 ITVMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDP 479
Query: 482 DTGDNARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGS 541
D+ +NA++TYS+ + +QGAP SS++ +N + G ++A ++FDYE ++ LQ++V DSG
Sbjct: 480 DSQENAQVTYSVTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGD 539
Query: 542 PPLHANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAG 600
PPL +N SL +FVLD+NDNAP +L+P + S L PRSA G LVTKV AVD D+G
Sbjct: 540 PPLSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSG 599
Query: 601 HNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTA 660
NAWLSY LL +++ PGLF V HTGEVRTARALL+ D+ Q +VV V+D+G P LS+T
Sbjct: 600 QNAWLSYRLL-KASEPGLFSVGLHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATV 658
Query: 661 TVLLVLEDEDPEEMPKSSDFLIH-PPERSDLTLYLIVALATVSLLSLVTFTFLSAKCL-- 717
T+ + + D PE + + P S LTLYL+VA+A +S + L L L
Sbjct: 659 TLTVAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAISCVFLAFVAVLLGLRLRR 718
Query: 718 --QGNADGDGGGGQCCRRQDSPSPDF--YKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHC 773
+ D GG R P+ F ++ LQ S EV+L +SH
Sbjct: 719 WHKSRLLQDSGG----RLVGVPASHFVGVEEVQAFLQTYS------QEVSLTADSRKSH- 767
Query: 774 YRTCFSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQA 833
P + +D + ++ +L D ++ + QQAPPNTDWRFSQA
Sbjct: 768 ---LIFPQPNYADM-LISQEGCEKNDSLLTSVDFHEYKNEA--DHGQQAPPNTDWRFSQA 821
Query: 834 QRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGP 893
QRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGP
Sbjct: 822 QRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGP 881
Query: 894 QFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
QFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 882 QFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11056063 protocadherin gamma subfamily A, 7 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 831 bits (2147), Expect = 0.0
Identities = 466/940 (49%), Positives = 611/940 (65%), Gaps = 50/940 (5%)
Query: 24 WGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGA 83
W +G++ YSV EE++ G+ VG++A+DLGL+ +L R +++ S + F+L+ SG+
Sbjct: 24 WEAWAGRILYSVSEETDKGSFVGDIAKDLGLEPRELAERGVRIISRGRTQLFALNQRSGS 83
Query: 84 LAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRIS 143
L +IDRE +C S CL+ ++ E + L ++VEI+D+NDN P F T E ++I
Sbjct: 84 LVTAGRIDREEICAQSARCLVNFNILMEDKMNLYPIDVEIIDINDNVPRFLTEEINVKIM 143
Query: 144 ESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDRE 203
E+ A G RFPL A DPDVGTN++ Y LSPN HFSL V++ D +PELVLE+ LDRE
Sbjct: 144 ENTAPGVRFPLSEAGDPDVGTNSLQSYQLSPNRHFSLAVQSGDDETKYPELVLERVLDRE 203
Query: 204 AQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLR 263
+ H LVLTA DGG P RS T I V V+D+ND+ P F +V +PEN P+GT LL
Sbjct: 204 EERVHHLVLTASDGGDPPRSSTAHIQVTVVDVNDHTPVFSLPQYQVTVPENVPVGTRLLT 263
Query: 264 LNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARAR 323
++A D DEG NG++ YSF T + + +F L+ +G I L +D+EE+ FYE+ +A+
Sbjct: 264 VHAIDLDEGVNGEVTYSFRKITPK-LPKMFHLNSLTGEISTLEGLDYEETAFYEMEVQAQ 322
Query: 324 DQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNG 383
D P + + V DVNDNAPEV + SL++ + E TP+GTV+ LF ++DRDSG+NG
Sbjct: 323 D--GPGSLTKAKVLITVLDVNDNAPEVTMTSLSSSIPEDTPLGTVIALFYLQDRDSGKNG 380
Query: 384 EVSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRL 442
EV+ I +LPF+++ S +N+Y L+T++ LDRE S Y I L A+D G+P L + I +
Sbjct: 381 EVTCTIPENLPFKLEKSIDNYYRLVTTKNLDRETLSLYNITLKATDGGTPPLSRETHIFM 440
Query: 443 NISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAP 502
++D NDN P F Y+ YI EN P G+ + V A D D+ DNA++TYS+ + +QGAP
Sbjct: 441 QVADTNDNPPTFPHSSYSVYIAENNPRGASIFLVTAQDHDSEDNAQITYSLAEDTIQGAP 500
Query: 503 ASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAP 562
SS+V +N + G ++A ++FDYE L+ LQ+ V DSG PPL +N SL +FVLD+NDN P
Sbjct: 501 VSSYVSINSDTGVLYALQSFDYEQLRELQLRVTAHDSGDPPLSSNMSLSLFVLDQNDNPP 560
Query: 563 AVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLV 621
+L+P + S L PRSA PG LVTKV AVD D+G NAWLSY LL +++ PGLF V
Sbjct: 561 EILYPALPTDGSTGMELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYLLL-KASEPGLFAV 619
Query: 622 STHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFL 681
+TGEVRTARALL+ D+ Q +VV V+D+G P LS+T T+ + + D PE +
Sbjct: 620 GLYTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGS-- 677
Query: 682 IHP---PERSDLTLYLIVALATVS---------LLSLVTFTFLSAKCLQGNADGDGGGGQ 729
+ P P DLTLYL+VA+ATVS LL+L + ++ LQ + G
Sbjct: 678 LEPSDGPYNYDLTLYLVVAVATVSCVFLAFVLVLLALRLRRWHKSRLLQASEGG------ 731
Query: 730 CCRRQDSPSPDFYKQSSPNLQVSSDGTLKYM-----EVTLRPTDSQSHCYRTCFSPASDG 784
+ P+ F V DG ++ EV+L +SH P +
Sbjct: 732 ---LANVPTSHF---------VGMDGVQAFLQTYSHEVSLTADSRKSH----LIFPQPNY 775
Query: 785 SDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNG 844
D + S ++ +L D + N QQAPPNTDWRFSQAQRPGTSGSQNG
Sbjct: 776 VDM-LISQESCEKNDSLLTSVDFQECKENL--PSIQQAPPNTDWRFSQAQRPGTSGSQNG 832
Query: 845 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR 904
DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR
Sbjct: 833 DDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYR 892
Query: 905 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 893 QNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 932
>gi|11128041 protocadherin gamma subfamily A, 10 isoform 1 precursor
[Homo sapiens]
Length = 936
Score = 830 bits (2144), Expect = 0.0
Identities = 468/945 (49%), Positives = 604/945 (63%), Gaps = 42/945 (4%)
Query: 15 VLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRY 74
+LC+ W + Q+ YS+ EE E G+ VGN+++DLGL +L R +++ S +
Sbjct: 19 LLCLFFGIPWEAGARQISYSIPEELEKGSFVGNISKDLGLAPRELAERGVRIVSRGRTQL 78
Query: 75 FSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFA 134
FSL+ SG+L +IDRE LC S C++ ++ E ++L +E+E+ D+NDN+P F
Sbjct: 79 FSLNPRSGSLITAGRIDREELCAQSARCVVSFNILVEDRVKLFGIEIEVTDINDNAPKFQ 138
Query: 135 TPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPEL 194
+++I+E+ A+G RFPL A DPDVG N++ Y LSPN HFSL V++ +G +PEL
Sbjct: 139 AENLDVKINENVAAGMRFPLPEAIDPDVGVNSLQSYQLSPNKHFSLRVQSRANGVKYPEL 198
Query: 195 VLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPEN 254
VLE LDRE +A H LVLTA DGG P RSGT L+SV V D NDNAP F RV +PEN
Sbjct: 199 VLEHSLDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDANDNAPVFTLPEYRVSVPEN 258
Query: 255 APIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESR 314
P+GT LL + ATD DEG NG++ YSF + F L+ +G I + +D+EE+
Sbjct: 259 LPVGTQLLTVTATDRDEGANGEVTYSFRKLPDTQLLK-FQLNKYTGEIKISENLDYEETG 317
Query: 315 FYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNV 374
FYEI +A D G A + + V DVNDN+PE+ + SL +PV E +P+GTVV L NV
Sbjct: 318 FYEIEIQAEDGG--AYLATAKVLITVEDVNDNSPELTITSLFSPVTEDSPLGTVVALLNV 375
Query: 375 RDRDSGRNGEVSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGSPS 433
D DS +NG+V+ I LPF+++ S +++Y L+ + LDRE S Y I + A+D GSP
Sbjct: 376 HDLDSEQNGQVTCSILAYLPFKLEKSIDSYYRLVIHRALDREQVSSYNITVTATDGGSPP 435
Query: 434 LHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSI 493
L L ++D+NDN P F+Q Y YI EN G+ + +V A DPD+ +NA++ YS+
Sbjct: 436 LSTEAHFMLQVADINDNPPTFSQVSYFTYIPENNARGASIFSVTALDPDSKENAQIIYSL 495
Query: 494 VGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVF 553
+ +QG P SS++ +N + G ++A R+FDYE LQ+ V DSG PPL +N SL +F
Sbjct: 496 AEDTIQGVPLSSYISINSDTGVLYALRSFDYEQFHELQMQVTASDSGDPPLSSNVSLSLF 555
Query: 554 VLDENDNAPAVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQ 612
VLD+NDNAP +L+P + S L PRSA PG LVTKV AVD D+G NAWLSY LL +
Sbjct: 556 VLDQNDNAPEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLL-K 614
Query: 613 STAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPE 672
++ PGLF V HTGEVRTARALL+ D+ Q +VV V+D+G P LS+T T+ + + D P+
Sbjct: 615 ASEPGLFAVGEHTGEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPQ 674
Query: 673 EMPKSSDFLIHP-PERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQG-------NADGD 724
+ F E SDLTLYL+VA+A VS + L L A L+ A G
Sbjct: 675 VLADLGSFESPANSETSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGG 734
Query: 725 GGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYM-----EVTLRPTDSQSHCYRTCFS 779
G G S + V DG ++ EV+L +SH
Sbjct: 735 GLTG----------------VSGSHFVGVDGVRAFLQTYSHEVSLTADSRKSH----LIF 774
Query: 780 PASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTS 839
P + +D T + S ++ L+L D+ +T QAPPNTDWRFSQAQRPGTS
Sbjct: 775 PQPNYAD-TLISQESCEKNDPLSLLDDSKFPIEDT--PLVPQAPPNTDWRFSQAQRPGTS 831
Query: 840 GSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQH 899
GSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQH
Sbjct: 832 GSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQH 891
Query: 900 VPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
VPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 892 VPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 936
>gi|11128027 protocadherin gamma subfamily B, 7 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 828 bits (2140), Expect = 0.0
Identities = 465/948 (49%), Positives = 603/948 (63%), Gaps = 42/948 (4%)
Query: 10 AGKWQVLCMLSL-CCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGS 68
AG QVL L L + + +RYS+ EE G++VGN+A+DLGL + D+ +R L++ +
Sbjct: 11 AGPRQVLFPLLLPLFYPTLCEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARELRVSA 70
Query: 69 EENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLND 128
E+ +FS+ SG L V +IDRE +C C L ++ V E+PL + V V I D+ND
Sbjct: 71 EK--LHFSVDAQSGDLLVKDRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVND 128
Query: 129 NSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDG 188
++P F E + ISES + G L+SA+DPD+ N++S Y LSPN +FSL K DG
Sbjct: 129 HAPQFRKDEINLEISESVSLGMGTILESAEDPDISMNSLSKYQLSPNEYFSLVEKDNPDG 188
Query: 189 KPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLR 248
+PELVL++ LDRE Q+ H LVLTA+DGG P RSGT I ++V+D NDN P F V R
Sbjct: 189 GKYPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYR 248
Query: 249 VGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPI 308
V + E+ P GT +LR+ ATD DEG N ++ YSF +A +++F LD ++G I P+
Sbjct: 249 VSLREDVPPGTSILRVKATDQDEGINSEITYSFFGVADKA-QHVFSLDYTTGNILTQQPL 307
Query: 309 DFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTV 368
DFEE Y I+ A+D+G ++ C + V+V D NDN+PE+++ SL++ ++E +P G V
Sbjct: 308 DFEEVERYTINIEAKDRG--SLSTRCKVIVEVVDENDNSPEIIITSLSDQIMEDSPPGVV 365
Query: 369 VGLFNVRDRDSGRNGEVSLDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLAS 427
V LF RD+DSG NGEV +S +PF+I S N+Y L+T + LDRE T Y + + A+
Sbjct: 366 VALFKTRDQDSGENGEVRCSLSRGVPFKIHSSSNNYYKLVTDEALDREQTPEYNVTIAAT 425
Query: 428 DAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNA 487
D G P L TI L+I+DVNDNAP F Q Y ++ EN PG+ + V+ASDPD G N
Sbjct: 426 DRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVHVPENNQPGASIAQVSASDPDFGLNG 485
Query: 488 RLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHAN 547
R++YS++ + ++ SS+V V+ + G +FAQR FD+E L+ ++ + RD GSP L AN
Sbjct: 486 RVSYSLIASDLESRTLSSYVSVSAQSGVVFAQRAFDHEQLRTFELTLQARDQGSPALSAN 545
Query: 548 TSLHVFVLDENDNAPAVLHPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLS 606
SL V V D NDNAP VL+P + SA +PR+A PG LVTKV AVDAD+GHNAWLS
Sbjct: 546 VSLRVLVGDRNDNAPRVLYPALGPDGSALFDTVPRAAQPGYLVTKVVAVDADSGHNAWLS 605
Query: 607 YSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVL 666
Y ++ Q++ PGLF + TGEVR RAL + DS Q+++V VRD G P LS+TAT+ LV
Sbjct: 606 YHVV-QASEPGLFSLGLRTGEVRMVRALGDKDSVRQRLLVAVRDGGQPPLSATATLHLVF 664
Query: 667 EDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNAD---G 723
D E +P SD ++++ YL+VALA +S+L L+ A L+ + G
Sbjct: 665 ADSLQEVLPDFSDHPTPSDSQAEMQFYLVVALALISVLFLLAVILAIALRLRQSFSPTAG 724
Query: 724 DGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSPASD 783
D C + P Y S+GTL Y Y C
Sbjct: 725 DCFESVLCSKSGPVGPPNY----------SEGTLPY-------------AYNFCVPGDQM 761
Query: 784 GSDFTFLRPLSVQQPTALALEPDAIRSRSNTL-------RERSQQAPPNTDWRFSQAQRP 836
+F F + T L D++ S + QQAPPNTDWRFSQAQRP
Sbjct: 762 NPEFNFFTSVDHCPATQDNLNKDSMLLASILTPSVEADKKILKQQAPPNTDWRFSQAQRP 821
Query: 837 GTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFT 896
GTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFT
Sbjct: 822 GTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFT 881
Query: 897 LQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
LQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 882 LQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 821 bits (2121), Expect = 0.0
Identities = 469/937 (50%), Positives = 596/937 (63%), Gaps = 40/937 (4%)
Query: 16 LCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYF 75
L +LSL C + Q+RY + EE G++VGN+A DLG + +L +R+L++ SE+ YF
Sbjct: 19 LFLLSLFCPA-LCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKP--YF 75
Query: 76 SLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFAT 135
++S SG L V+ ++DRE +CG +C L + V E+PL V VEI D+ND++P F
Sbjct: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
Query: 136 PEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELV 195
E++ISESA G RF L SA D D+G+NT+ Y LSP+ HFSL K DG +PE+V
Sbjct: 136 NSFELQISESAQPGTRFILGSAHDADIGSNTLQNYQLSPSDHFSLINKEKSDGSKYPEMV 195
Query: 196 LEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENA 255
L+ LDRE Q + L LTA+D G P S T I V+V D NDNAP F V RV + EN
Sbjct: 196 LKTPLDREKQKSYHLTLTALDFGAPPLSSTAQIHVLVTDANDNAPVFSQDVYRVSLSENV 255
Query: 256 PIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRF 315
GT +L++ ATD DEG N ++ +SF + S+ + F L+ ++G I VL +DFEE +
Sbjct: 256 YPGTTVLQVTATDQDEGVNAEITFSFSE-ASQITQ--FDLNSNTGEITVLNTLDFEEVKE 312
Query: 316 YEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVR 375
Y I ARD G M C ++V+V D NDNAPEV+ SL N ++E +GT + L VR
Sbjct: 313 YSIVLEARDGG--GMIAQCTVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVR 370
Query: 376 DRDSGRNGEVSLDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLASDAGSPSL 434
D+DS NGEV+ + D+PF+I S N Y L+T LDRE Y I + A+D G P L
Sbjct: 371 DKDSRHNGEVTCKLEGDVPFKILTSSRNTYKLVTDAVLDREQNPEYNITVTATDRGKPPL 430
Query: 435 HKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIV 494
+I L+I DVNDNAP F+Q Y ++ EN PPG+ + V ASDPD G N +++Y I+
Sbjct: 431 SSSSSITLHIGDVNDNAPVFSQSSYIVHVAENNPPGASISQVRASDPDLGPNGQVSYCIM 490
Query: 495 GNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFV 554
+ ++ SS+V ++ E G +FAQR FD+E L+ ++ + RD GSP L AN SL V V
Sbjct: 491 ASDLEQRELSSYVSISAESGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLV 550
Query: 555 LDENDNAPAVLHPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQS 613
D NDNAP VL+P + SA +P +A PG LVTKV AVDAD+GHNAWLSY +L Q+
Sbjct: 551 DDRNDNAPRVLYPALGPDGSALFDMVPHAAEPGYLVTKVVAVDADSGHNAWLSYHVL-QA 609
Query: 614 TAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEE 673
+ PGLF + TGEVRTARAL + D+ Q+++V VRD G P LS+TAT+ LV D E
Sbjct: 610 SEPGLFSLGLRTGEVRTARALGDRDAVRQRLLVAVRDGGQPPLSATATLHLVFADSLQEV 669
Query: 674 MPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRR 733
+P +D +++L YL+VALA +S+L LV A R
Sbjct: 670 LPDITDRPDPSDLQAELQFYLVVALALISVLFLVAMILAIA----------------LRL 713
Query: 734 QDSPSPDFYKQSSPNLQVSSDGTL--KYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLR 791
+ S SP + P L V S+ + Y E TL + Y C + ++F FL+
Sbjct: 714 RRSSSPASWSCFQPGLCVKSESVVPPNYSEGTL------PYSYNLCVAHTGK-TEFNFLK 766
Query: 792 ---PLSVQQPTALALEPDAIRSRSNTLRERS-QQAPPNTDWRFSQAQRPGTSGSQNGDDT 847
LS Q A+ N+ S QQAPPNTDWRFSQAQRPGTSGSQNGDDT
Sbjct: 767 CSEQLSSGQDILCGDSSGALFPLCNSSELTSHQQAPPNTDWRFSQAQRPGTSGSQNGDDT 826
Query: 848 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 907
GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV
Sbjct: 827 GTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNV 886
Query: 908 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 887 YIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|11128029 protocadherin gamma subfamily B, 6 isoform 1 precursor
[Homo sapiens]
Length = 930
Score = 815 bits (2105), Expect = 0.0
Identities = 460/952 (48%), Positives = 603/952 (63%), Gaps = 49/952 (5%)
Query: 10 AGKWQVLCMLSL-CCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGS 68
AG QVL L L + +S +RYS+ EE G++VGN+A+DLGL + D+ +R+L++ +
Sbjct: 11 AGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSA 70
Query: 69 EENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLND 128
E+ +FS+ SG L V +IDRE +C C L ++ V E+PL + V V I D+ND
Sbjct: 71 EK--LHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVND 128
Query: 129 NSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDG 188
++P F E + I ESA++G R LD A DPD+ N++ Y ++ N +FSL V+ DG
Sbjct: 129 HAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDG 188
Query: 189 KPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLR 248
+PEL LE+ LDRE Q H L+LTA+DGG P RS T I + V D NDN P F R
Sbjct: 189 GKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYR 248
Query: 249 VGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPI 308
+ + EN P G+ +L++ ATD DEG N +++Y F T+++ +++F LD +G I
Sbjct: 249 ISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRS-TAQSTKHMFSLDEKTGMIKNNQSF 307
Query: 309 DFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTV 368
DFE+ Y + A+D G + C + +++ D NDN+PE+++ SL++ +LE++P G V
Sbjct: 308 DFEDVERYTMEVEAKDGG--GLSTQCKVIIEILDENDNSPEIIITSLSDQILENSPPGMV 365
Query: 369 VGLFNVRDRDSGRNGEVSLDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLAS 427
V LF RD D G NGEV +I D+PF+I S N+Y L+T LDRE T Y + ++A+
Sbjct: 366 VALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNVTIVAT 425
Query: 428 DAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNA 487
D G P L +I L ++D+NDNAP F+Q Y ++ EN PPG+ + V+ASDPD G N
Sbjct: 426 DRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNG 485
Query: 488 RLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHAN 547
++YSIV + ++ SS+V V+ + G +FAQR FD+E L+ + + RD GSP L AN
Sbjct: 486 HISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSAN 545
Query: 548 TSLHVFVLDENDNAPAVLHPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLS 606
SL V V D NDNAP VL+P + SA +PRSA PG LVTKV AVDAD+GHNAWLS
Sbjct: 546 VSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLS 605
Query: 607 YSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVL 666
Y +L Q++ PGLF + TGEVRTARAL + D+ Q+++V VRD G P LS+TAT+ LV
Sbjct: 606 YHVL-QASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVF 664
Query: 667 EDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGG 726
D E +P SD + +++L YL+VALA +S+L L+ A
Sbjct: 665 ADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIA------------ 712
Query: 727 GGQCCRRQDSPSPDFYKQSSPNLQVSSDGTL--KYMEVTLRPTDSQSHCYRTCFSPASDG 784
R + S SP + P L V S + Y E TL + Y C +
Sbjct: 713 ----LRLRRSLSPATWDCFHPGLCVKSGPVVPPNYSEGTL------PYSYNLCIAHTGT- 761
Query: 785 SDFTFLR---PLSVQQPTALALEPDAI---------RSRSNTLRERSQQAPPNTDWRFSQ 832
+F FL+ PL + ++ P A+ S TL + QAPPNTDWRFSQ
Sbjct: 762 KEFNFLKCSVPLHSNEDMVCSVSPGALIPPHGGEDLTSHPETL---TSQAPPNTDWRFSQ 818
Query: 833 AQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG 892
AQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG
Sbjct: 819 AQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYG 878
Query: 893 PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 879 PQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 930
>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 814 bits (2103), Expect = 0.0
Identities = 459/939 (48%), Positives = 599/939 (63%), Gaps = 44/939 (4%)
Query: 16 LCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYF 75
L +LSL C + Q+RY + EE G++VGN+A DLG + +L +R+L++ SE+ YF
Sbjct: 19 LFLLSLFCPA-LCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKP--YF 75
Query: 76 SLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFAT 135
++S SG L V+ ++DRE +CG +C L + V E+PL V VEI D+ND++P F
Sbjct: 76 TVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLNFYHVNVEIEDINDHTPKFTQ 135
Query: 136 PEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELV 195
E++ISESA G RF L+ A+D D+G N++ Y LS N FSL +K +DG +PEL
Sbjct: 136 NSFELQISESAQPGTRFILEVAEDADIGLNSLQKYKLSLNPSFSLIIKEKQDGSKYPELA 195
Query: 196 LEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENA 255
LE+ LDRE Q+ H+LVLTA+DGG P SGTT + + V D NDN P F V RV + EN
Sbjct: 196 LEKTLDREQQSYHRLVLTALDGGHPPLSGTTELRIQVTDANDNPPVFNRDVYRVSLRENV 255
Query: 256 PIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRF 315
P GT +L+++ATD DEG N ++ YSF +F L+ SG I +DFEE++
Sbjct: 256 PPGTTVLQVSATDQDEGINSEITYSF-----YRTGQIFSLNSKSGEITTQKKLDFEETKE 310
Query: 316 YEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVR 375
Y + RD G + C +++++ D NDN+PEV SL +LE+ GT++ L +
Sbjct: 311 YSMVVEGRDGG--GLVAQCTVEINIQDENDNSPEVTFHSLLEMILENAVPGTLIALIKIH 368
Query: 376 DRDSGRNGEVSLDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLASDAGSPSL 434
D+DSG NGEV+ + ++PF+I S+N Y L+T LDRE T Y + + A+D G P L
Sbjct: 369 DQDSGENGEVNCQLQGEVPFKIISSSKNSYKLVTDGTLDREQTPEYNVTITATDRGKPPL 428
Query: 435 HKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIV 494
+++ L+I DVNDNAP F+Q Y + EN PPG+ + V ASD D G N +++YSI+
Sbjct: 429 SSSISVILHIRDVNDNAPVFHQASYLVSVPENNPPGASIAQVCASDLDLGLNGQVSYSIM 488
Query: 495 GNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFV 554
+ ++ +S+V ++ + G +FAQR FDYE L+ ++ + RD GSP L AN SL V V
Sbjct: 489 ASDLEPLALASYVSMSAQSGVVFAQRAFDYEQLRTFELTLQARDQGSPALSANVSLRVLV 548
Query: 555 LDENDNAPAVLHPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQS 613
D NDNAP VL+P + SA +PR+A PG LVTKV AVDAD+GHNAWLSY +L Q+
Sbjct: 549 GDRNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVL-QA 607
Query: 614 TAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEE 673
+ PGLF + TGEVRTARAL + D+ Q+++V VRD G P LS+TAT+ LV D E
Sbjct: 608 SEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADSLQEV 667
Query: 674 MPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRR 733
+P +D + +++L YL+VALA +S+L L+ A L RR
Sbjct: 668 LPDITDRPVPSDPQAELQFYLVVALALISVLFLLAVILAVALRL--------------RR 713
Query: 734 QDSPS------PDFYKQSSPNLQVS-SDGTLKYM-EVTLRPTDSQSHCYRTCFSPASDGS 785
SP+ P +S P + + S GTL Y + + T + C S G
Sbjct: 714 SSSPAAWSCFQPGLCVKSGPVVPPNYSQGTLPYSYNLCVAHTGKTEFNFLKCSEQLSSGQ 773
Query: 786 DFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGD 845
D + ++ AL P S S + E QAPPNTDWRFSQAQRPGTSGSQNGD
Sbjct: 774 DI-------LCGDSSGALFPLCNSSESTSHPEL--QAPPNTDWRFSQAQRPGTSGSQNGD 824
Query: 846 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 905
DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ
Sbjct: 825 DTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQ 884
Query: 906 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 885 NVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 923
>gi|14277675 protocadherin gamma subfamily C, 3 isoform 1 precursor
[Homo sapiens]
Length = 934
Score = 812 bits (2097), Expect = 0.0
Identities = 438/932 (46%), Positives = 587/932 (62%), Gaps = 48/932 (5%)
Query: 31 LRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAVNQKI 90
+ Y + EE E G VGNV +LGL + L +RR ++ S + R+F ++ +G + VN ++
Sbjct: 33 IHYEIPEEREKGFAVGNVVANLGLDLGSLSARRFRVVSGASRRFFEVNRETGEMFVNDRL 92
Query: 91 DRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESAASGA 150
DRE LCG SC + +++V E+PLEL VEV I D+NDN+P+F T E ++ ISE+ A G
Sbjct: 93 DREELCGTLPSCTVTLELVVENPLELFSVEVVIQDINDNNPAFPTQEMKLEISEAVAPGT 152
Query: 151 RFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQARHQL 210
RFPL+SA DPDVG+N++ Y LS N +F+L V+T +D + ELVLE+ LDRE + QL
Sbjct: 153 RFPLESAHDPDVGSNSLQTYELSRNEYFALRVQTREDSTKYAELVLERALDREREPSLQL 212
Query: 211 VLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNATDPD 270
VLTA+DGGTPA S + I + VLD NDNAP F S+ R + E+AP GT ++++ ATD D
Sbjct: 213 VLTALDGGTPALSASLPIHIKVLDANDNAPVFNQSLYRARVLEDAPSGTRVVQVLATDLD 272
Query: 271 EGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQPAM 330
EG NG++ YSFG H VR LF LD +G + + G +DFE+++ +EI+ +A+D+G
Sbjct: 273 EGPNGEIIYSFGSHNRAGVRQLFALDLVTGMLTIKGRLDFEDTKLHEIYIQAKDKGANPE 332
Query: 331 EGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVSLDIS 390
HC + V+V DVNDNAPE+ + S+ +PV E P+GTV+ L +V D D+G NG V+ ++
Sbjct: 333 GAHCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEVP 392
Query: 391 PDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLNISDVND 449
P LPF + S +N+++L TS LDRE Y + + A DAG+PSL +R+ +SD+ND
Sbjct: 393 PGLPFSLTSSLKNYFTLKTSADLDRETVPEYNLSITARDAGTPSLSALTIVRVQVSDIND 452
Query: 450 NAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPASSFVYV 509
N P+ +Q Y YI EN PG+ + ++ DPD NARL++ ++ + + +
Sbjct: 453 NPPQSSQSSYDVYIEENNLPGAPILNLSVWDPDAPQNARLSFFLLEQGAETGLVGRYFTI 512
Query: 510 NPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPAVLHPRP 569
N ++G + + DYE + ++ + D G+P L N S+++FV D NDNAP VL+PRP
Sbjct: 513 NRDNGIVSSLVPLDYEDRREFELTAHISDGGTPVLATNISVNIFVTDRNDNAPQVLYPRP 572
Query: 570 DWEHSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTHTGEVR 629
S+ + LPR G LV++V DADAGHNAWLSYSLL S LF + HTG++
Sbjct: 573 G--GSSVEMLPRGTSAGHLVSRVVGWDADAGHNAWLSYSLL-GSPNQSLFAIGLHTGQIS 629
Query: 630 TARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIHPPERSD 689
TAR + + DS Q + VL++DNG+PSLS+TAT+ + + ++ PE + ++ +
Sbjct: 630 TARPVQDTDSPRQTLTVLIKDNGEPSLSTTATLTVSVTEDSPEARAEFPSGSAPREQKKN 689
Query: 690 LTLYLIVALATVSLLSLVT-FTFLSAKCLQGNADGDGGGGQCCRRQDSPSPDFYKQSSPN 748
LT YL+++L VS+ +VT F + K + D +P Y+ P+
Sbjct: 690 LTFYLLLSLILVSVGFVVTVFGVIIFKVYKWKQSRD--------LYRAPVSSLYRTPGPS 741
Query: 749 LQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPDAI 808
L + +R H Y + L+ P A
Sbjct: 742 LHADA----------VRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLA-------- 783
Query: 809 RSRSNTLRE----------------RSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 852
SR NTLR QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 784 -SRQNTLRSCDPVFYRQVLGAESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 842
Query: 853 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 912
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 843 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 902
Query: 913 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 934
>gi|11128035 protocadherin gamma subfamily B, 2 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 811 bits (2095), Expect = 0.0
Identities = 451/928 (48%), Positives = 590/928 (63%), Gaps = 41/928 (4%)
Query: 30 QLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAVNQK 89
Q+RYS+ EE ++VGN+A+DLGL + DL +R+L++ +E+ YF+++ SG L V+ +
Sbjct: 32 QIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSAEKE--YFTVNPESGDLLVSDR 89
Query: 90 IDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESAASG 149
IDRE +CG C+L V E+PL + + V + D+NDN+P F + ++I ES G
Sbjct: 90 IDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINLKIGESTKPG 149
Query: 150 ARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQARHQ 209
FPLD A D DVG N++ Y L+ N +F L K DG+ +PEL+L+ LDRE + HQ
Sbjct: 150 TTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQ 209
Query: 210 LVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNATDP 269
LVLTAVDGG P +SGTT I + V D NDN P F V RV + E+ P G +L++ ATD
Sbjct: 210 LVLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDR 269
Query: 270 DEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQPA 329
DEG N ++ YSF + E V++ F L+ +G I +DFE + Y + A+D G A
Sbjct: 270 DEGINAEITYSF-HNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLA 328
Query: 330 MEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVSLDI 389
HC IQV++ D ND APEV++ S++ P+ E +P GTV+ L RDRDSG NGEV +
Sbjct: 329 --AHCSIQVEILDDNDCAPEVIVTSVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQV 386
Query: 390 SPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLNISDVN 448
+ F +K S +N+Y L+T LDRE Y + + A+D G P L + + L+ISDVN
Sbjct: 387 LGNAKFILKSSSKNYYKLVTDGALDREEIPEYNLTITATDGGKPPLSSSIIVTLHISDVN 446
Query: 449 DNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPASSFVY 508
DNAP F Q Y ++ EN PPG+ + ++ASDPD G + +++YSIV + ++ S+V
Sbjct: 447 DNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYSIVASDLKPREILSYVS 506
Query: 509 VNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPAVLHPR 568
V+ + G +FAQR FD+E L+ ++ + RD GSP L AN SL V V D NDNAP VL+P
Sbjct: 507 VSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPA 566
Query: 569 PDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTHTGE 627
+ SA +PR+A PG LVTKV AVDAD+GHNAWLSY +L Q++ PGLF + TGE
Sbjct: 567 LGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVL-QASEPGLFSLGLRTGE 625
Query: 628 VRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIHPPER 687
VRTARAL + D+ Q+++V VRD G P LS+TAT+ L+ D E +P SD +
Sbjct: 626 VRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDPQ 685
Query: 688 SDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRRQDSPSPDFYKQSSP 747
+ L YL+VALA +S+L + + L+ ++ D D P + P
Sbjct: 686 AKLQFYLVVALALISVLFFLAVILAISLRLRLSSRSDAW--------DCFQPGLSSKPGP 737
Query: 748 NLQVS-SDGTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPD 806
+ + S+GTL Y Y C + S ++F FL ++ + A L D
Sbjct: 738 GVLPNYSEGTLPYS-------------YNLCVASQSAKTEFNFLN-ITPELVPAQDLVCD 783
Query: 807 AIRSRSNTLRERS----------QQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 856
NT + +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD
Sbjct: 784 NASWEQNTNHGAAGVPFASDTILKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 843
Query: 857 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 916
TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL
Sbjct: 844 TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATL 903
Query: 917 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
TNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 904 TNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11056032 protocadherin gamma subfamily A, 1 isoform 1 precursor
[Homo sapiens]
Length = 931
Score = 811 bits (2095), Expect = 0.0
Identities = 455/932 (48%), Positives = 595/932 (63%), Gaps = 43/932 (4%)
Query: 28 SGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAVN 87
+G + YSV EE++ G+ VGN+A+DLGL+ +L +++ S F+L+ SG+L
Sbjct: 28 AGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRGRMPLFALNPRSGSLITA 87
Query: 88 QKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESAA 147
++IDRE LC S CL+ ++ E ++L VEVEI+D+NDN+P F E E +++E
Sbjct: 88 RRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQFQLEELEFKMNEITT 147
Query: 148 SGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQAR 207
G R L QD DVG N++ Y LS N HFSL+V+ DG PE+VL+ LDRE +A
Sbjct: 148 PGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAV 207
Query: 208 HQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNAT 267
H L+LTA DGG P RSGT I + V+D NDN P F + + +PEN P+GT LL +NAT
Sbjct: 208 HHLILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPENVPLGTQLLMVNAT 267
Query: 268 DPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQ 327
DPDEG NG++ YSF + V +F LD +G I P+DFEE + Y + +A+D
Sbjct: 268 DPDEGANGEVTYSF-HNVDHRVAQIFRLDSYTGEISNKEPLDFEEYKMYSMEVQAQDGA- 325
Query: 328 PAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVSL 387
+ + + V DVNDNAPEV + S+ V E+ P GT++ L +V D+DSG NG +
Sbjct: 326 -GLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPENFPPGTIIALISVHDQDSGDNGYTTC 384
Query: 388 DISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLNISD 446
I +LPF++ K +N+Y L+T + LDRE S Y I + A D G+P+L I L ++D
Sbjct: 385 FIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNITITAIDQGTPALSTETHISLLVTD 444
Query: 447 VNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPASSF 506
+NDN+P F+Q Y+AYI EN P G+ + +V A D D+ +NA++TYS++ + +QGAP S++
Sbjct: 445 INDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYSLIEDTIQGAPLSAY 504
Query: 507 VYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPAVLH 566
+ +N + G ++A R+FDYE + +Q+ V RDSG PPL +N SL +F+LD+NDNAP +L+
Sbjct: 505 LSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLLDQNDNAPEILY 564
Query: 567 PRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTHT 625
P + S L P SA PG LVTKV AVD D+G NAWLSY LL +++ PGLF V HT
Sbjct: 565 PALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLL-KASEPGLFSVGLHT 623
Query: 626 GEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIHP- 684
GEVRTARALL+ D+ Q +VV V+D+G P LS+T T+ + + D + + + P
Sbjct: 624 GEVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILADLGS--LEPS 681
Query: 685 --PERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQG-----NADGDGGGGQCCRRQDSP 737
P SDLTLYL+VA A VS + L L A L+ GGG P
Sbjct: 682 AKPNDSDLTLYLVVAAAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGG-----LASMP 736
Query: 738 SPDFYKQSSPNLQVSSDGTLKYM-----EVTLRPTDSQSHCYRTCFSPASDGSDFTFLRP 792
F V DG ++ EV+L +SH P + +D T +
Sbjct: 737 GSHF---------VGVDGVRAFLQTYSHEVSLTADSRKSHL----IFPQPNYAD-TLISQ 782
Query: 793 LSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 852
S ++ L+ + + SQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
Sbjct: 783 ESCEKKGFLSAPQSLLEDKKEPF---SQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN 839
Query: 853 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 912
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS
Sbjct: 840 NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGS 899
Query: 913 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 944
NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 900 NATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK 931
>gi|11128033 protocadherin gamma subfamily B, 3 isoform 1 precursor
[Homo sapiens]
Length = 929
Score = 809 bits (2089), Expect = 0.0
Identities = 457/927 (49%), Positives = 588/927 (63%), Gaps = 35/927 (3%)
Query: 27 VSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAV 86
+S +RY++ EE + G+LVGN+A+DLG + DL +R L++ +E+ ++F++S +G L V
Sbjct: 29 LSEPIRYAIPEELDRGSLVGNLAKDLGFGVGDLPTRNLRVIAEK--KFFTVSPENGNLLV 86
Query: 87 NQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESA 146
+ +IDRE +CG ++C+L ++V E PL V V I D+NDN P+F+ E+ ISE A
Sbjct: 87 SDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVTVLIQDINDNPPTFSQNITELEISELA 146
Query: 147 ASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQA 206
+GA F L+SAQDPDVG N++ Y LSP+ HFSL K DG +PELVL+ LDRE Q
Sbjct: 147 LTGATFALESAQDPDVGVNSLQQYYLSPDPHFSLIQKENLDGSRYPELVLKAPLDREEQP 206
Query: 207 RHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRLNA 266
H LVLTAVDGG P+RS TT I VIV D NDN P F + RV + EN P G+ +L++ A
Sbjct: 207 HHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPPVFTQDMYRVNVAENLPAGSSVLKVMA 266
Query: 267 TDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARDQG 326
D DEG N ++ Y+F + E VR LF LD +G + +G +DFEE Y I A+D G
Sbjct: 267 IDMDEGINAEIIYAFINIGKE-VRQLFKLDSKTGELTTIGELDFEERDSYTIGVEAKDGG 325
Query: 327 QPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGEVS 386
+C +Q+D+ D NDNAPE+ LAS + + E +GT V L D DSG NGE+
Sbjct: 326 HHT--AYCKVQIDISDENDNAPEITLASESQHIQEDAELGTAVALIKTHDLDSGFNGEIL 383
Query: 387 LDISPDLPFQI-KPSENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLNIS 445
+ + PF+I + ++N Y L+T LDRE Y + + A+D G+P L TI L+I
Sbjct: 384 CQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNVTITATDKGNPPLSSSKTITLHIL 443
Query: 446 DVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPASS 505
DVNDN P F+Q YT ++ EN PPG+ + V ASDPD G N ++Y IV + ++ SS
Sbjct: 444 DVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPDLGPNGLVSYYIVASDLEPRELSS 503
Query: 506 FVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPAVL 565
+V V+ G +FAQR FD+E L+ ++ + RD GSP L AN SL V V D NDNAP VL
Sbjct: 504 YVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSPTLSANVSLRVLVDDRNDNAPLVL 563
Query: 566 HPRPDWEHSAP-QRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVSTH 624
+P E SA +PRSA PG LVTKV AVDAD+G+NAWLSY ++ Q++ PGLF +
Sbjct: 564 YPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGYNAWLSYHIV-QASEPGLFSLGLR 622
Query: 625 TGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIHP 684
TGEVRTAR L + ++ Q+++V VRD G LS+T + L+ D E P SD
Sbjct: 623 TGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVMLHLIFADSLQEIQPDLSDRPTPS 682
Query: 685 PERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADGDGGGGQCCRRQDSPSPDFYKQ 744
+++L +L+VALA +S+L L+ + L+ C R P+ + Y Q
Sbjct: 683 DPQAELQFHLVVALALISVLFLLAVILAISLRLR-----------CSSR---PATEGYFQ 728
Query: 745 SSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALE 804
+ Y E TL + Y C + S ++F FL + L
Sbjct: 729 PGVCFKTVPGVLPTYSERTL------PYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLC 782
Query: 805 PDAIRSRSNTLRER-------SQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 857
+A SN E +QAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT
Sbjct: 783 DEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT 842
Query: 858 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 917
EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT
Sbjct: 843 EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 902
Query: 918 NAAGKRDGKAPAGGNGNKKKSGKKEKK 944
NAAGKRDGKAPAGGNGNKKKSGKKEKK
Sbjct: 903 NAAGKRDGKAPAGGNGNKKKSGKKEKK 929
>gi|9256600 protocadherin alpha subfamily C, 2 isoform 1 precursor
[Homo sapiens]
Length = 1007
Score = 689 bits (1777), Expect = 0.0
Identities = 396/967 (40%), Positives = 576/967 (59%), Gaps = 46/967 (4%)
Query: 15 VLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLG--SEENG 72
+L +L L G + QLRYSV EE PG LVGNVA+ LGL++ L L++ +
Sbjct: 28 LLLLLLLLLPGPAASQLRYSVPEEQAPGALVGNVARALGLELRRLGPGCLRINHLGAPSP 87
Query: 73 RYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPS 132
RY L L SGAL VN++IDRE+LC CLL ++V+ +P+ + VEVEILD+NDNSP
Sbjct: 88 RYLELDLTSGALFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAVEVEILDINDNSPR 147
Query: 133 FATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFP 192
F P ++++SES A GARF ++SAQDPDVG N+V Y LSP+ HF L++K L++
Sbjct: 148 FPRPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEHFELDLKPLQENSKVL 207
Query: 193 ELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIP 252
ELVL + LDRE A H LVLTAVDGG PARSGT ISV VLD NDN+P F S RV +
Sbjct: 208 ELVLRKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVLDTNDNSPAFDQSTYRVQLR 267
Query: 253 ENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEE 312
E++P GTL+++LNA+DPDEG+NG+L YS +TS+ R LF +D S+G + V+G +D+EE
Sbjct: 268 EDSPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEE 327
Query: 313 SRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLF 372
+ Y+I+ +A D+G M GHC + VD+ DVNDNAPEV+L L +PV E+ T+V +
Sbjct: 328 ASSYQIYVQATDRGPVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVL 387
Query: 373 NVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHYIIELLASDAGSP 432
+V D+DSG N +VSL + LPF++ N Y+L+ S PLDRE + Y I + A+D G P
Sbjct: 388 SVNDQDSGPNRKVSLGLEATLPFRLNGFGNSYTLVVSGPLDRERVAVYNITVTATDGGIP 447
Query: 433 SLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYS 492
L T+++ ISD+NDN P F + Y+ YI EN PG LLCTV A+DPD +NA +TYS
Sbjct: 448 QLTSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAEVTYS 507
Query: 493 IVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHV 552
++ ++QG P +S+V +N G ++A +FDYE + + V +D GSPPL + + +V
Sbjct: 508 LLEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGSPPLSSTVTANV 567
Query: 553 FVLDENDNAPAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQ 612
+V+D ND+AP +L+P +A + +PR+AP G LVTKV A+D+D+G NAWL Y L Q
Sbjct: 568 YVVDMNDHAPHILYPTSTNSSAAFEMVPRTAPAGYLVTKVIAMDSDSGQNAWLFYH-LAQ 626
Query: 613 STAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPE 672
++ LF V HTGE+RT R + ++ T + V+VRDNG+PSLS++ + + + D +
Sbjct: 627 TSDLDLFKVELHTGEIRTTRKMGDESGSTFNLTVVVRDNGEPSLSASVAITVAVVDRVSK 686
Query: 673 EMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLS-AKCLQGNADGDG-GGGQC 730
+P + + P S++TLYLI+AL+TVS + L+T LS KC + A G GG C
Sbjct: 687 ILPDTQRHVKSPRTYSEITLYLIIALSTVSFIFLLTIIILSIIKCYRYTAYGTACCGGFC 746
Query: 731 CRRQDSPSPDFYKQSSPNLQVSSDGTLK----YMEVTLRPTDSQSHCYRTCFSPASDGSD 786
R+ SP+ + YKQ++ N+ LK ++EV + ++++CY+ C + S
Sbjct: 747 GVRERSPA-ELYKQANNNIDARIPHGLKVQPHFIEVRGNGSLTKTYCYKACLTAGSGSDT 805
Query: 787 FTFLRPLSVQQPTALALEPDAIRSRS----------------NTLRERSQQAPPNTDWRF 830
F F + P + SR+ N +++ PN DWR+
Sbjct: 806 FMFYNTGAQTGPGPSGAQAAVTDSRNLTGQSGQNAGNLIILKNEAVSQNEPRQPNPDWRY 865
Query: 831 SQAQRPGTSGSQNGDDTGT------WPNNQFDTEMLQAMILASAS---EAADGSSTLGGG 881
S + R G S + ++ G P+ Q+ T ++SA+ EA + S +G G
Sbjct: 866 SASLRAGMHSSVHLEEAGILRAGPGGPDQQWPT-------VSSATPEPEAGEVSPPVGAG 918
Query: 882 AGTMGLSARYGPQFTLQHVP-DYRQNVYIPGSNATLT---NAAGKRDGKAPAGGNGNKKK 937
+ + +YGP Q P + IPGS A ++ + K+ G K++
Sbjct: 919 VNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEE 978
Query: 938 SGKKEKK 944
+ KK+KK
Sbjct: 979 TKKKKKK 985
>gi|14277682 protocadherin gamma subfamily C, 4 isoform 2 precursor
[Homo sapiens]
Length = 871
Score = 678 bits (1750), Expect = 0.0
Identities = 365/746 (48%), Positives = 492/746 (65%), Gaps = 13/746 (1%)
Query: 25 GWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGAL 84
G+V GQ+RY V EES+ GT VGNVAQD L L +RRLQ+ E N R+F + L SGAL
Sbjct: 25 GYVCGQIRYPVPEESQEGTFVGNVAQDFLLDTDSLSARRLQVAGEVNQRHFRVDLDSGAL 84
Query: 85 AVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISE 144
+ IDRE+LCG S SC++P++ VTE PLE+ R EVEI+D+ND++P F + ++ I E
Sbjct: 85 LIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLDLEIGE 144
Query: 145 SAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREA 204
+A G RFPL+ AQD DVG+N++S Y LS N HF+L+VK DG PEL+LE+ LDRE
Sbjct: 145 AAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREK 204
Query: 205 QARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPIGTLLLRL 264
Q+ ++LVLTAVDGG P RSGT + V VLD+NDNAP FQ S R+ + E+AP G +L++L
Sbjct: 205 QSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQL 264
Query: 265 NATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESRFYEIHARARD 324
NA+DPD G +G + + F HT + VRNLF L P++G + +LGP+DFE +YE RARD
Sbjct: 265 NASDPDLGPSGNVTFYFSGHTPDRVRNLFSLHPTTGKLTLLGPLDFESENYYEFDVRARD 324
Query: 325 QGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNVRDRDSGRNGE 384
G PAME HC ++VD+ DVNDNAP + + S + ES GTVV L +V+D DSG NG+
Sbjct: 325 GGSPAMEQHCSLRVDLLDVNDNAPYITVTSELGTLPESAEPGTVVALISVQDPDSGSNGD 384
Query: 385 VSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLASDAGSPSLHKHLTIRLN 443
VSL I LPF +K + N +SL+T+ PLDREA S Y I + ASDAG+P L H TI LN
Sbjct: 385 VSLRIPDHLPFALKSAFRNQFSLVTAGPLDREAKSSYDIMVTASDAGNPPLSTHRTIFLN 444
Query: 444 ISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSIVGNQVQGAPA 503
ISDVNDN P F Q+ + ++ EN PG LLC++AASDPD+G NA ++YS++ + + A
Sbjct: 445 ISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLNALISYSLLEPRNRDVSA 504
Query: 504 SSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVFVLDENDNAPA 563
SSF+ +NP+ G + A R+FDYE Q LQ V RD G+PPL + ++ +FVLD NDNAPA
Sbjct: 505 SSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAPA 564
Query: 564 VLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQSTAPGLFLVST 623
VL PR PQ LP S G L+TKVTAVD D+G+NAW+SY LL ++ P LF VS
Sbjct: 565 VLRPRARPGSLCPQALPPSVGAGHLITKVTAVDLDSGYNAWVSYQLL-EAPDPSLFAVSR 623
Query: 624 HTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPEEMPKSSDFLIH 683
+ GEVRTA + D Q++V++V+D+G P LS++ T+L+ LE++ +P +
Sbjct: 624 YAGEVRTA-VPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAP 682
Query: 684 PPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADG----DGGGGQC---CRRQDS 736
S LTLYL V+L + +S +F L +KCL+G A G G C RR++
Sbjct: 683 REGESRLTLYLAVSLVAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREG 742
Query: 737 PSPDFYKQSSPNLQVSSDGTLKYMEV 762
P +Q+ SD +K+++V
Sbjct: 743 LPP---SNGILRIQLGSDDPIKFVDV 765
>gi|14165431 protocadherin alpha subfamily C, 2 isoform 2 precursor
[Homo sapiens]
Length = 884
Score = 664 bits (1712), Expect = 0.0
Identities = 355/783 (45%), Positives = 505/783 (64%), Gaps = 10/783 (1%)
Query: 15 VLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLG--SEENG 72
+L +L L G + QLRYSV EE PG LVGNVA+ LGL++ L L++ +
Sbjct: 28 LLLLLLLLLPGPAASQLRYSVPEEQAPGALVGNVARALGLELRRLGPGCLRINHLGAPSP 87
Query: 73 RYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPS 132
RY L L SGAL VN++IDRE+LC CLL ++V+ +P+ + VEVEILD+NDNSP
Sbjct: 88 RYLELDLTSGALFVNERIDREALCEQRPRCLLSLEVLAHNPVAVSAVEVEILDINDNSPR 147
Query: 133 FATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFP 192
F P ++++SES A GARF ++SAQDPDVG N+V Y LSP+ HF L++K L++
Sbjct: 148 FPRPNYQLQVSESVAPGARFHIESAQDPDVGANSVQTYELSPSEHFELDLKPLQENSKVL 207
Query: 193 ELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIP 252
ELVL + LDRE A H LVLTAVDGG PARSGT ISV VLD NDN+P F S RV +
Sbjct: 208 ELVLRKGLDREQAALHHLVLTAVDGGIPARSGTAQISVRVLDTNDNSPAFDQSTYRVQLR 267
Query: 253 ENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEE 312
E++P GTL+++LNA+DPDEG+NG+L YS +TS+ R LF +D S+G + V+G +D+EE
Sbjct: 268 EDSPPGTLVVKLNASDPDEGSNGELRYSLSSYTSDRERQLFSIDASTGEVRVIGGLDYEE 327
Query: 313 SRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLF 372
+ Y+I+ +A D+G M GHC + VD+ DVNDNAPEV+L L +PV E+ T+V +
Sbjct: 328 ASSYQIYVQATDRGPVPMAGHCKVLVDIVDVNDNAPEVVLTDLYSPVPENATPNTIVAVL 387
Query: 373 NVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHYIIELLASDAGSP 432
+V D+DSG N +VSL + LPF++ N Y+L+ S PLDRE + Y I + A+D G P
Sbjct: 388 SVNDQDSGPNRKVSLGLEATLPFRLNGFGNSYTLVVSGPLDRERVAVYNITVTATDGGIP 447
Query: 433 SLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYS 492
L T+++ ISD+NDN P F + Y+ YI EN PG LLCTV A+DPD +NA +TYS
Sbjct: 448 QLTSLRTLKVEISDINDNPPSFLEDSYSIYIQENNLPGVLLCTVQATDPDEKENAEVTYS 507
Query: 493 IVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHV 552
++ ++QG P +S+V +N G ++A +FDYE + + V +D GSPPL + + +V
Sbjct: 508 LLEREIQGLPVTSYVSINSASGSLYAVNSFDYEKFREFFVTVEAQDKGSPPLSSTVTANV 567
Query: 553 FVLDENDNAPAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQ 612
+V+D ND+AP +L+P +A + +PR+AP G LVTKV A+D+D+G NAWL Y L Q
Sbjct: 568 YVVDMNDHAPHILYPTSTNSSAAFEMVPRTAPAGYLVTKVIAMDSDSGQNAWLFYH-LAQ 626
Query: 613 STAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVLLVLEDEDPE 672
++ LF V HTGE+RT R + ++ T + V+VRDNG+PSLS++ + + + D +
Sbjct: 627 TSDLDLFKVELHTGEIRTTRKMGDESGSTFNLTVVVRDNGEPSLSASVAITVAVVDRVSK 686
Query: 673 EMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLS-AKCLQGNADGDG-GGGQC 730
+P + + P S++TLYLI+AL+TVS + L+T LS KC + A G GG C
Sbjct: 687 ILPDTQRHVKSPRTYSEITLYLIIALSTVSFIFLLTIIILSIIKCYRYTAYGTACCGGFC 746
Query: 731 CRRQDSPSPDFYKQSSPNLQVSSDGTLK----YMEVTLRPTDSQSHCYRTCFSPASDGSD 786
R+ SP+ + YKQ++ N+ LK ++EV + ++++CY+ C + S
Sbjct: 747 GVRERSPA-ELYKQANNNIDARIPHGLKVQPHFIEVRGNGSLTKTYCYKACLTAGSGSDT 805
Query: 787 FTF 789
F F
Sbjct: 806 FMF 808
>gi|14589916 protocadherin 10 isoform 1 precursor [Homo sapiens]
Length = 1040
Score = 635 bits (1638), Expect = 0.0
Identities = 385/970 (39%), Positives = 546/970 (56%), Gaps = 87/970 (8%)
Query: 27 VSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAV 86
V QL Y+V EE E GT VGN+A+DLGL +T L +R Q Y L+L +G L V
Sbjct: 16 VFSQLHYTVQEEQEHGTFVGNIAEDLGLDITKLSARGFQTVPNSRTPYLDLNLETGVLYV 75
Query: 87 NQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESA 146
N+KIDRE +C S SC+L ++V E+PLEL +VE+E+LD+NDN PSF P+ + ISESA
Sbjct: 76 NEKIDREQICKQSPSCVLHLEVFLENPLELFQVEIEVLDINDNPPSFPEPDLTVEISESA 135
Query: 147 ASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQA 206
G RFPL+SA DPDVGTN++ Y ++PNS+FSL+V+T DG F ELVLE+ LDRE QA
Sbjct: 136 TPGTRFPLESAFDPDVGTNSLRDYEITPNSYFSLDVQTQGDGNRFAELVLEKPLDREQQA 195
Query: 207 RHQLVLTAVDGG-------------------TPARSGTTLISVIVLDINDNAPTFQSSVL 247
H+ VLTAVDGG R+GT L+++ VLD NDN P F V
Sbjct: 196 VHRYVLTAVDGGGGGGVGEGGGGGGGAGLPPQQQRTGTALLTIRVLDSNDNVPAFDQPVY 255
Query: 248 RVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGP 307
V +PEN+P GTL+++LNATDPDEG NG++ YSF H S R LFGL P +G + V G
Sbjct: 256 TVSLPENSPPGTLVIQLNATDPDEGQNGEVVYSFSSHISPRARELFGLSPRTGRLEVSGE 315
Query: 308 IDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGT 367
+D+EES Y+++ +A+D G A+ HC + V V D NDNAPE+ +++ V E GT
Sbjct: 316 LDYEESPVYQVYVQAKDLGPNAVPAHCKVLVRVLDANDNAPEISFSTVKEAVSEGAAPGT 375
Query: 368 VVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLA 426
VV LF+V DRDS NG+V ++ D+PF++K S +N+Y+++T PLDREA Y + ++A
Sbjct: 376 VVALFSVTDRDSEENGQVQCELLGDVPFRLKSSFKNYYTIVTEAPLDREAGDSYTLTVVA 435
Query: 427 SDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDN 486
D G P+L +I++ +SDVNDNAPRF+Q +Y Y+ EN PG+ + V+A+D D G N
Sbjct: 436 RDRGEPALSTSKSIQVQVSDVNDNAPRFSQPVYDVYVTENNVPGAYIYAVSATDRDEGAN 495
Query: 487 ARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSP-PLH 545
A+L YSI+ Q+QG ++V +N E+G ++A R+FDYE L+ V RD+GSP L
Sbjct: 496 AQLAYSILECQIQGMSVFTYVSINSENGYLYALRSFDYEQLKDFSFQVEARDAGSPQALA 555
Query: 546 ANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQR--LPRSAPPGSLVTKVTAVDADAGHNA 603
N ++++ ++D+NDNAPA++ P P + P R LPRSA PG L+T+V AVDAD G NA
Sbjct: 556 GNATVNILIVDQNDNAPAIVAPLPG-RNGTPAREVLPRSAEPGYLLTRVAAVDADDGENA 614
Query: 604 WLSYSLLPQSTAPGLFLVSTHTGEVRTARAL--LEDDSDTQQVVVLVRDNGDPSLSSTAT 661
L+YS++ + LF + TGE+RTAR + D ++V+ VRD+G P LSSTAT
Sbjct: 615 RLTYSIV-RGNEMNLFRMDWRTGELRTARRVPAKRDPQRPYELVIEVRDHGQPPLSSTAT 673
Query: 662 VLLVLEDEDPEEM-----PKSSDFLIHPPERS-------DLTLYLIVALATVSLLSLVTF 709
+++ L D E P RS DLTL LI+AL +VS + L+
Sbjct: 674 LVVQLVDGAVEPQGGGGSGGGGSGEHQRPSRSGGGETSLDLTLILIIALGSVSFIFLLAM 733
Query: 710 TFLSAKCLQGNADG----------------DGGGGQCCRRQDSPSPDFYKQSSPNLQVSS 753
L+ +C + GGG CC RQ +S L SS
Sbjct: 734 IVLAVRCQKEKKLNIYTCLASDCCLCCCCCGGGGSTCCGRQARARKKKLSKSDIMLVQSS 793
Query: 754 DGTLKYMEVTLRPT-------DSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALA---- 802
+ +V + + +Q++CY+ C +P S +D FL+P S + T
Sbjct: 794 NVPSNPAQVPIEESGGFGSHHHNQNYCYQVCLTPESAKTDLMFLKPCSPSRSTDTEHNPC 853
Query: 803 ---------LEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGD-----DTG 848
+PD I S + L ++ + + +R +S Q D D+G
Sbjct: 854 GAIVTGYTDQQPDII-SNGSILSNETKHQRAELSYLVDRPRRVNSSAFQEADIVSSKDSG 912
Query: 849 TWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSAR-YGPQFTL---QHVPDYR 904
+ Q D++ + S D S +G S R + P F + DYR
Sbjct: 913 HGDSEQGDSD--HDATNRAQSAGMDLFSNCTEECKALGHSDRCWMPSFVPSDGRQAADYR 970
Query: 905 QNVYIPGSNA 914
N+++PG ++
Sbjct: 971 SNLHVPGMDS 980
>gi|14589914 protocadherin 10 isoform 2 precursor [Homo sapiens]
Length = 896
Score = 629 bits (1622), Expect = e-180
Identities = 358/833 (42%), Positives = 498/833 (59%), Gaps = 62/833 (7%)
Query: 27 VSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRYFSLSLMSGALAV 86
V QL Y+V EE E GT VGN+A+DLGL +T L +R Q Y L+L +G L V
Sbjct: 16 VFSQLHYTVQEEQEHGTFVGNIAEDLGLDITKLSARGFQTVPNSRTPYLDLNLETGVLYV 75
Query: 87 NQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFATPEREMRISESA 146
N+KIDRE +C S SC+L ++V E+PLEL +VE+E+LD+NDN PSF P+ + ISESA
Sbjct: 76 NEKIDREQICKQSPSCVLHLEVFLENPLELFQVEIEVLDINDNPPSFPEPDLTVEISESA 135
Query: 147 ASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPELVLEQQLDREAQA 206
G RFPL+SA DPDVGTN++ Y ++PNS+FSL+V+T DG F ELVLE+ LDRE QA
Sbjct: 136 TPGTRFPLESAFDPDVGTNSLRDYEITPNSYFSLDVQTQGDGNRFAELVLEKPLDREQQA 195
Query: 207 RHQLVLTAVDGG-------------------TPARSGTTLISVIVLDINDNAPTFQSSVL 247
H+ VLTAVDGG R+GT L+++ VLD NDN P F V
Sbjct: 196 VHRYVLTAVDGGGGGGVGEGGGGGGGAGLPPQQQRTGTALLTIRVLDSNDNVPAFDQPVY 255
Query: 248 RVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGP 307
V +PEN+P GTL+++LNATDPDEG NG++ YSF H S R LFGL P +G + V G
Sbjct: 256 TVSLPENSPPGTLVIQLNATDPDEGQNGEVVYSFSSHISPRARELFGLSPRTGRLEVSGE 315
Query: 308 IDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGT 367
+D+EES Y+++ +A+D G A+ HC + V V D NDNAPE+ +++ V E GT
Sbjct: 316 LDYEESPVYQVYVQAKDLGPNAVPAHCKVLVRVLDANDNAPEISFSTVKEAVSEGAAPGT 375
Query: 368 VVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPS-ENHYSLLTSQPLDREATSHYIIELLA 426
VV LF+V DRDS NG+V ++ D+PF++K S +N+Y+++T PLDREA Y + ++A
Sbjct: 376 VVALFSVTDRDSEENGQVQCELLGDVPFRLKSSFKNYYTIVTEAPLDREAGDSYTLTVVA 435
Query: 427 SDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDN 486
D G P+L +I++ +SDVNDNAPRF+Q +Y Y+ EN PG+ + V+A+D D G N
Sbjct: 436 RDRGEPALSTSKSIQVQVSDVNDNAPRFSQPVYDVYVTENNVPGAYIYAVSATDRDEGAN 495
Query: 487 ARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSP-PLH 545
A+L YSI+ Q+QG ++V +N E+G ++A R+FDYE L+ V RD+GSP L
Sbjct: 496 AQLAYSILECQIQGMSVFTYVSINSENGYLYALRSFDYEQLKDFSFQVEARDAGSPQALA 555
Query: 546 ANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQR--LPRSAPPGSLVTKVTAVDADAGHNA 603
N ++++ ++D+NDNAPA++ P P + P R LPRSA PG L+T+V AVDAD G NA
Sbjct: 556 GNATVNILIVDQNDNAPAIVAPLPG-RNGTPAREVLPRSAEPGYLLTRVAAVDADDGENA 614
Query: 604 WLSYSLLPQSTAPGLFLVSTHTGEVRTARAL--LEDDSDTQQVVVLVRDNGDPSLSSTAT 661
L+YS++ + LF + TGE+RTAR + D ++V+ VRD+G P LSSTAT
Sbjct: 615 RLTYSIV-RGNEMNLFRMDWRTGELRTARRVPAKRDPQRPYELVIEVRDHGQPPLSSTAT 673
Query: 662 VLLVLEDEDPEEM-----PKSSDFLIHPPERS-------DLTLYLIVALATVSLLSLVTF 709
+++ L D E P RS DLTL LI+AL +VS + L+
Sbjct: 674 LVVQLVDGAVEPQGGGGSGGGGSGEHQRPSRSGGGETSLDLTLILIIALGSVSFIFLLAM 733
Query: 710 TFLSAKCLQGNADG----------------DGGGGQCCRRQDSPSPDFYKQSSPNLQVSS 753
L+ +C + GGG CC RQ +S L SS
Sbjct: 734 IVLAVRCQKEKKLNIYTCLASDCCLCCCCCGGGGSTCCGRQARARKKKLSKSDIMLVQSS 793
Query: 754 DGTLKYMEVTLRPT-------DSQSHCYRTCFSPASDGSDFTFLRPLSVQQPT 799
+ +V + + +Q++CY+ C +P S +D FL+P S + T
Sbjct: 794 NVPSNPAQVPIEESGGFGSHHHNQNYCYQVCLTPESAKTDLMFLKPCSPSRST 846
>gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 621 bits (1601), Expect = e-177
Identities = 373/951 (39%), Positives = 551/951 (57%), Gaps = 58/951 (6%)
Query: 15 VLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSEENGRY 74
+L +L L SGQL YSV EE++ GT VG +AQDLGL++ +L+ R ++ S+ +G
Sbjct: 15 LLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKRHGDL 74
Query: 75 FSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDNSPSFA 134
++L +G L VN +IDRE LCG S C + ++V+ + PL++ VEVE+ D+NDN+P F
Sbjct: 75 LEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDNAPVFP 134
Query: 135 TPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGKPFPEL 194
+ + ISES G+RF L+ A D D+GTN++ Y+L +F+L+VK + L
Sbjct: 135 MAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTLDVKRNDEEIKSLGL 194
Query: 195 VLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPEN 254
VL++ L+RE +H L++TA+DGG P +GTT + + VLD+NDNAP F+ ++ +V + EN
Sbjct: 195 VLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAPAFERTIYKVRLLEN 254
Query: 255 APIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPIDFEESR 314
AP GTL++ +NATD DEG N + YSF S + + F LDP +G I V G IDFEES+
Sbjct: 255 APNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNGQISVKGNIDFEESK 314
Query: 315 FYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVVGLFNV 374
YEI A D+G P M HC + +++ D+NDN PE+++ SL+ PVLE +P+ TV+ L +V
Sbjct: 315 SYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVLEDSPLSTVIALISV 374
Query: 375 RDRDSGRNGEVSLDISPDLPFQ-IKPSENHYSLLTSQPLDREATSHYIIELLASDAGSPS 433
DRDSG NG+V+ ++P +PF+ + +N+YSL+ PLDRE+ S Y + + A D GSPS
Sbjct: 375 SDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSAYELVVTARDGGSPS 434
Query: 434 LHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNARLTYSI 493
L ++ + ++DVNDNAP F+Q YT ++ EN PPG + TV+A D D +NA ++YS+
Sbjct: 435 LWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSL 494
Query: 494 VGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVF 553
V +V SS+V V+ E G+++A + D+E L++LQ V RD+G PPL +N +L VF
Sbjct: 495 VERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVF 554
Query: 554 VLDENDNAPAVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSYSLLPQ 612
VLDENDNAPA+L PR A L PRS G +V KV AVDAD+G+NAWLSY L P
Sbjct: 555 VLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPG 614
Query: 613 STAPGL-FLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVL--LVLEDE 669
+ + F V +TGE+ T RAL E D+ +++VLV+D+G+PSL++TATVL LV +
Sbjct: 615 TGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLTATATVLVSLVESGQ 674
Query: 670 DPEEMPKSSDFLIHPPER-SDLTLYLIVALATV-SLLSLVTFTFLSAKCLQGNADGDGGG 727
P+ ++S P D+ +YLIVA+ V SLL L + + +C +GD G
Sbjct: 675 APKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTALRCSAPPTEGDCGP 734
Query: 728 GQCCRRQDSPSPDFYKQSSPNLQVSSD-GTLKYMEVTLRPTDSQSHCYRTCFSPASDGSD 786
G+ P L SS G+ Y SQ R C + +G
Sbjct: 735 GK-----------------PTLVCSSAVGSWSY---------SQQRQQRVC---SGEGLP 765
Query: 787 FTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGDD 846
T L S P + D + + ++ PN DWR+S + R G S + ++
Sbjct: 766 KTDLMAFSPSLPPC-PISRDREEKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEE 824
Query: 847 TGT------WPNNQFDTEMLQAMILASAS---EAADGSSTLGGGAGTMGLSARYGPQFTL 897
G P+ Q+ T ++SA+ EA + S +G G + + +YGP
Sbjct: 825 AGILRAGPGGPDQQWPT-------VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPK 877
Query: 898 QHVP-DYRQNVYIPGSNATLT---NAAGKRDGKAPAGGNGNKKKSGKKEKK 944
Q P + IPGS A ++ + K+ G K+++ KK+KK
Sbjct: 878 QSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKKK 928
>gi|9256596 protocadherin alpha 8 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 614 bits (1584), Expect = e-175
Identities = 376/955 (39%), Positives = 540/955 (56%), Gaps = 57/955 (5%)
Query: 11 GKWQVLCMLSL-CCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLLSRRLQLGSE 69
G W++L +L L W SGQL YSV EE++ GT VG +AQDLGL++ +L+ R ++ S+
Sbjct: 10 GSWRLLLLLLLLAAWKVGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASK 69
Query: 70 ENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVEVEILDLNDN 129
+ +SL +G L VN +IDRE LCG S C + ++V+ + PL++ V+VE+ D+NDN
Sbjct: 70 RHRDLLEVSLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVDVEVKDVNDN 129
Query: 130 SPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSLNVKTLKDGK 189
P F ++++ +SES +RFPL+ A D DVG N+V Y LS + +F L+V + D
Sbjct: 130 PPVFRVKDQKLFVSESRMPDSRFPLEGASDADVGANSVLTYRLSSHDYFMLDVNSKNDEN 189
Query: 190 PFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRV 249
ELVL + LDRE H L LTA DGG P +GT + V VLD+NDNAPTF+ S V
Sbjct: 190 KLVELVLRKSLDREDAPAHHLFLTATDGGKPELTGTVQLLVTVLDVNDNAPTFEQSEYEV 249
Query: 250 GIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSGAIHVLGPID 309
I ENA GT +++LNA+DPDEG NG + YSF V + F +D ++G I + G +D
Sbjct: 250 RIFENADNGTTVIKLNASDPDEGANGAISYSFNSLVETMVIDHFSIDRNTGEIVIRGNLD 309
Query: 310 FEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLESTPVGTVV 369
FE+ Y+I A D+G P M GHC + V + D NDN PE+ L SL+ PV E GTV+
Sbjct: 310 FEQENLYKILIDATDKGHPPMAGHCTVLVRILDKNDNVPEIALTSLSLPVREDAQFGTVI 369
Query: 370 GLFNVRDRDSGRNGEVSLDISPDLPFQ-IKPSENHYSLLTSQPLDREATSHYIIELLASD 428
L +V D DSG NG+V+ + P +PF+ + +N+YSL+ LDRE S Y + + A D
Sbjct: 370 ALISVNDLDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRERVSAYELVVTARD 429
Query: 429 AGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNAR 488
GSPSL ++ + ++DVNDNAP F Q YT ++ EN PPG + TV+A D D +NA
Sbjct: 430 GGSPSLWATASLSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENAL 489
Query: 489 LTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANT 548
++YS+V +V SS++ V+ E G+++A + D+E L++LQ V RD+G PPL +N
Sbjct: 490 VSYSLVERRVGERSLSSYISVHTESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNV 549
Query: 549 SLHVFVLDENDNAPAVLHPRPDWEHSAPQRL-PRSAPPGSLVTKVTAVDADAGHNAWLSY 607
+L VFVLDENDNAPA+L PR A +L PRS G +V KV AVDAD+G+NAWLSY
Sbjct: 550 TLQVFVLDENDNAPALLEPRVGGTGGAASKLVPRSVGAGHVVAKVRAVDADSGYNAWLSY 609
Query: 608 SLLPQSTAPGL-FLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTATVL--L 664
L P +++P + F V +TGE+ T R L E DS +++VLV+D+G+P+L++TATVL L
Sbjct: 610 ELQPAASSPRIPFRVGLYTGEISTTRVLDEADSPRHRLLVLVKDHGEPALTATATVLVSL 669
Query: 665 VLEDEDPEEMPKSSDFLIHPPER-SDLTLYLIVALATVSLLSLVTFTFLSAKCLQGNADG 723
V + P+ + S ++ P D+ +YLI+A+ VS SL+ T L L+ +A
Sbjct: 670 VESGQAPKASSRQSAGVLGPEAALVDVNVYLIIAICAVS--SLLVLTLLLYTALRCSALP 727
Query: 724 DGGGGQCCRRQDSPSPDFYKQSSPNLQVSSD-GTLKYMEVTLRPTDSQSHCYRTCFSPAS 782
GG CR P L SS G+ Y SQ R C +
Sbjct: 728 TEGG---CR-----------AGKPTLVCSSAVGSWSY---------SQQQPQRVC---SG 761
Query: 783 DGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSGSQ 842
+G T L S P L D + + + PN DWR+S + R G S
Sbjct: 762 EGPPKTDLMAFSPCLPPDLG-SVDVGEEQDLNVDHGLKPRQPNPDWRYSASLRAGMHSSV 820
Query: 843 NGDDTGT------WPNNQFDTEMLQAMILASAS---EAADGSSTLGGGAGTMGLSARYGP 893
+ ++ G P+ Q+ T ++SA+ EA + S +G G + + +YGP
Sbjct: 821 HLEEAGILRAGPGGPDQQWPT-------VSSATPEPEAGEVSPPVGAGVNSNSWTFKYGP 873
Query: 894 QFTLQHVP-DYRQNVYIPGSNATLT---NAAGKRDGKAPAGGNGNKKKSGKKEKK 944
Q P + IPGS A ++ + K+ G K+++ KK+KK
Sbjct: 874 GNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKKK 928
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,464,917
Number of Sequences: 37866
Number of extensions: 1933111
Number of successful extensions: 10933
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3666
Number of HSP's gapped (non-prelim): 665
length of query: 944
length of database: 18,247,518
effective HSP length: 112
effective length of query: 832
effective length of database: 14,006,526
effective search space: 11653429632
effective search space used: 11653429632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.