Guide to the Human Genome
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Search of human proteins with 169171887

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169171887 PREDICTED: hypothetical protein LOC154860 [Homo
sapiens]
         (137 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169171887 PREDICTED: hypothetical protein LOC154860 [Homo sap...   286   5e-78
gi|169171120 PREDICTED: hypothetical protein LOC154860 [Homo sap...   286   5e-78
gi|169170630 PREDICTED: hypothetical protein LOC154860 [Homo sap...   286   5e-78
gi|154813204 inhibin beta B subunit preproprotein [Homo sapiens]       31   0.36 
gi|21618325 forkhead box E1 [Homo sapiens]                             30   0.81 
gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]            29   1.4  
gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo ...    29   1.4  
gi|239742747 PREDICTED: hypothetical protein XP_002342617 [Homo ...    29   1.4  
gi|154813197 talpid3 protein [Homo sapiens]                            29   1.4  
gi|190886454 tumor specificity and mitosis phase-dependent expre...    29   1.4  
gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]                28   1.8  
gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]                28   1.8  
gi|163965377 putative thiosulfate sulfurtransferase KAT isoform ...    28   1.8  
gi|163965371 putative thiosulfate sulfurtransferase KAT isoform ...    28   1.8  
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]          28   1.8  
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]     28   2.4  
gi|21703346 spartin [Homo sapiens]                                     28   3.1  
gi|214830187 spartin [Homo sapiens]                                    28   3.1  
gi|214830109 spartin [Homo sapiens]                                    28   3.1  
gi|214830079 spartin [Homo sapiens]                                    28   3.1  
gi|38016911 stomatin isoform a [Homo sapiens]                          28   3.1  
gi|54792133 hypothetical protein LOC25854 [Homo sapiens]               27   4.0  
gi|54792131 hypothetical protein LOC25854 [Homo sapiens]               27   4.0  
gi|164698498 septin 9 isoform b [Homo sapiens]                         27   5.3  
gi|164698494 septin 9 isoform a [Homo sapiens]                         27   5.3  
gi|116256489 septin 9 isoform c [Homo sapiens]                         27   5.3  
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]              27   5.3  
gi|125987596 sodium bicarbonate transporter 4 isoform a [Homo sa...    27   5.3  
gi|19743827 sodium bicarbonate transporter 4 isoform c [Homo sap...    27   5.3  
gi|73760403 Kruppel-like factor 10 isoform b [Homo sapiens]            27   5.3  

>gi|169171887 PREDICTED: hypothetical protein LOC154860 [Homo
           sapiens]
          Length = 137

 Score =  286 bits (731), Expect = 5e-78
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDVCAHQGDLPAPELCPQVHLCLPKSARRD 60
           MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDVCAHQGDLPAPELCPQVHLCLPKSARRD
Sbjct: 1   MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDVCAHQGDLPAPELCPQVHLCLPKSARRD 60

Query: 61  HFPCNAPQPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAA 120
           HFPCNAPQPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAA
Sbjct: 61  HFPCNAPQPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAA 120

Query: 121 ARTFPGAVSCQPAITQS 137
           ARTFPGAVSCQPAITQS
Sbjct: 121 ARTFPGAVSCQPAITQS 137


>gi|169171120 PREDICTED: hypothetical protein LOC154860 [Homo
           sapiens]
          Length = 137

 Score =  286 bits (731), Expect = 5e-78
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDVCAHQGDLPAPELCPQVHLCLPKSARRD 60
           MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDVCAHQGDLPAPELCPQVHLCLPKSARRD
Sbjct: 1   MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDVCAHQGDLPAPELCPQVHLCLPKSARRD 60

Query: 61  HFPCNAPQPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAA 120
           HFPCNAPQPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAA
Sbjct: 61  HFPCNAPQPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAA 120

Query: 121 ARTFPGAVSCQPAITQS 137
           ARTFPGAVSCQPAITQS
Sbjct: 121 ARTFPGAVSCQPAITQS 137


>gi|169170630 PREDICTED: hypothetical protein LOC154860 [Homo
           sapiens]
          Length = 137

 Score =  286 bits (731), Expect = 5e-78
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDVCAHQGDLPAPELCPQVHLCLPKSARRD 60
           MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDVCAHQGDLPAPELCPQVHLCLPKSARRD
Sbjct: 1   MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDVCAHQGDLPAPELCPQVHLCLPKSARRD 60

Query: 61  HFPCNAPQPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAA 120
           HFPCNAPQPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAA
Sbjct: 61  HFPCNAPQPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAA 120

Query: 121 ARTFPGAVSCQPAITQS 137
           ARTFPGAVSCQPAITQS
Sbjct: 121 ARTFPGAVSCQPAITQS 137


>gi|154813204 inhibin beta B subunit preproprotein [Homo sapiens]
          Length = 407

 Score = 30.8 bits (68), Expect = 0.36
 Identities = 15/32 (46%), Positives = 15/32 (46%)

Query: 13 PTPVAGVCKPPLSSAGGSLDVCAHQGDLPAPE 44
          PTP A    PP  S GGS D C   G    PE
Sbjct: 34 PTPAAPPPPPPPGSPGGSQDTCTSCGGFRRPE 65


>gi|21618325 forkhead box E1 [Homo sapiens]
          Length = 373

 Score = 29.6 bits (65), Expect = 0.81
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 63  PCNAPQPNTRRVWHLGRNSW-----GGAVERVEVSGKTPTAAAPTVRAPAAQARASRSAL 117
           P  A +P     W L  N+      G  + R +   ++  +  P     AA A A+ +A 
Sbjct: 115 PREAGRPGKGNYWALDPNAEDMFESGSFLRRRKRFKRSDLSTYPAYMHDAAAAAAAAAAA 174

Query: 118 EAAARTFPGAV 128
            AAA  FPGAV
Sbjct: 175 AAAAAIFPGAV 185


>gi|239753274 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 263

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 103 VRAPAAQ------ARASRSALEAAARTFPGAVSCQPAITQS 137
           VRA A Q      AR +RS+ + A+RT P A  C P +  S
Sbjct: 76  VRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLAS 116


>gi|239747844 PREDICTED: hypothetical protein XP_002346445 [Homo
           sapiens]
          Length = 263

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 103 VRAPAAQ------ARASRSALEAAARTFPGAVSCQPAITQS 137
           VRA A Q      AR +RS+ + A+RT P A  C P +  S
Sbjct: 76  VRAAAGQVPGEAGARRARSSAQLASRTAPAAPPCAPGLLAS 116


>gi|239742747 PREDICTED: hypothetical protein XP_002342617 [Homo
           sapiens]
          Length = 283

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 94  KTPTAAAPTVRA-PAAQARASRSALEAAARTFPGAVSCQ 131
           + PT A   V A PAAQ R       AA R  PG  +CQ
Sbjct: 205 EAPTCARRAVPAVPAAQPRGRAQRAPAARRQVPGGPACQ 243


>gi|154813197 talpid3 protein [Homo sapiens]
          Length = 1472

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 2    PSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDVCAHQG-DLPA 42
            PS   K+ VL+ TP +  C      A    ++CA +G D+PA
Sbjct: 990  PSSPAKECVLVKTPDSSPCDSDHDMAFPVKEICAEKGDDMPA 1031


>gi|190886454 tumor specificity and mitosis phase-dependent
           expression protein [Homo sapiens]
          Length = 394

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 13/119 (10%)

Query: 16  VAGVCKPPLSSAGGSLDVC---AHQGDLPAPELCPQVHLCLPKSARRDHFPCNAPQPNTR 72
           VAG+    LS+ GG  D     A  GD P P   PQ  +  P    R       P P   
Sbjct: 88  VAGLRTSLLSADGGPRDPTRAPARPGDQPPPP--PQRLVFAPADEPRTVLE-RKPLPLGV 144

Query: 73  RVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAAARTFPGAVSCQ 131
           R    G ++   + E++      P  AAP    PA   R+  +ALE ++    GAV+C+
Sbjct: 145 RAPLAGPSAAARSPEQL----CAPAEAAP---CPAEPERSQSAALEPSSSADAGAVACR 196


>gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]
          Length = 1220

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 28  GGSLDVCA------HQGDLPAPELCPQVHLCLPKSARRDHFPCNAPQPNTRRVWHLGRNS 81
           GGSLD+ A       + D     L P         AR   F    PQP   ++W L   +
Sbjct: 9   GGSLDIWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMN 68

Query: 82  WGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAAARTFPGAVSCQPA 133
             G +++VE S       A  +     Q     SAL    +  P A+S  PA
Sbjct: 69  NDGRMDQVEFS------IAMKLIKLKLQGYQLPSALPPVMKQQPVAISSAPA 114


>gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]
          Length = 1721

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 28  GGSLDVCA------HQGDLPAPELCPQVHLCLPKSARRDHFPCNAPQPNTRRVWHLGRNS 81
           GGSLD+ A       + D     L P         AR   F    PQP   ++W L   +
Sbjct: 9   GGSLDIWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMN 68

Query: 82  WGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAAARTFPGAVSCQPA 133
             G +++VE S       A  +     Q     SAL    +  P A+S  PA
Sbjct: 69  NDGRMDQVEFS------IAMKLIKLKLQGYQLPSALPPVMKQQPVAISSAPA 114


>gi|163965377 putative thiosulfate sulfurtransferase KAT isoform 1
           [Homo sapiens]
          Length = 115

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 96  PTAAAPTVRAPAAQARAS----RSALEAAARTFPGAVS 129
           PT + P +R+  A  RA     RS  EAAA T PGA++
Sbjct: 5   PTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALN 42


>gi|163965371 putative thiosulfate sulfurtransferase KAT isoform 3
           [Homo sapiens]
          Length = 109

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 96  PTAAAPTVRAPAAQARAS----RSALEAAARTFPGAVS 129
           PT + P +R+  A  RA     RS  EAAA T PGA++
Sbjct: 5   PTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALN 42


>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
          Length = 887

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 67  PQPNTRRVWHLGRNSWGGAVERVEVSG--KTPTAAAPTVRAPAAQARASRSALEAAARTF 124
           P P T+     G+ S G +    +     K P +AA  + A AA A A+ +A  AAA   
Sbjct: 461 PPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAP 520

Query: 125 PGAVSCQPAI 134
             A +  PA+
Sbjct: 521 ALAAAAAPAL 530


>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
          Length = 494

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 95  TPTAAAPTVR-APAAQARASRSALEAAARTFPGAVSCQP 132
           TP AAAP+   AP    R S S L A A   P   SC P
Sbjct: 38  TPVAAAPSSGFAPGFLRRHSASNLHALAHPAPSPGSCSP 76


>gi|21703346 spartin [Homo sapiens]
          Length = 666

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 81  SWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRS 115
           S+  A +  EV+G T T +A  V APA+ +  S+S
Sbjct: 131 SFSSAPQHAEVNGNTSTPSAGAVAAPASLSLPSQS 165


>gi|214830187 spartin [Homo sapiens]
          Length = 666

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 81  SWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRS 115
           S+  A +  EV+G T T +A  V APA+ +  S+S
Sbjct: 131 SFSSAPQHAEVNGNTSTPSAGAVAAPASLSLPSQS 165


>gi|214830109 spartin [Homo sapiens]
          Length = 666

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 81  SWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRS 115
           S+  A +  EV+G T T +A  V APA+ +  S+S
Sbjct: 131 SFSSAPQHAEVNGNTSTPSAGAVAAPASLSLPSQS 165


>gi|214830079 spartin [Homo sapiens]
          Length = 666

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 81  SWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRS 115
           S+  A +  EV+G T T +A  V APA+ +  S+S
Sbjct: 131 SFSSAPQHAEVNGNTSTPSAGAVAAPASLSLPSQS 165


>gi|38016911 stomatin isoform a [Homo sapiens]
          Length = 288

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 80  NSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSA 116
           ++WG  VERVE+  K         RA AA+A ASR A
Sbjct: 183 DAWGIKVERVEI--KDVKLPVQLQRAMAAEAEASREA 217


>gi|54792133 hypothetical protein LOC25854 [Homo sapiens]
          Length = 482

 Score = 27.3 bits (59), Expect = 4.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 1  MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDV 33
          +P+ +G Q     TP + V +PPLS+ G S ++
Sbjct: 37 LPTDKGVQHFQGSTPASAVHRPPLSACGHSSNI 69


>gi|54792131 hypothetical protein LOC25854 [Homo sapiens]
          Length = 482

 Score = 27.3 bits (59), Expect = 4.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 1  MPSGEGKQSVLIPTPVAGVCKPPLSSAGGSLDV 33
          +P+ +G Q     TP + V +PPLS+ G S ++
Sbjct: 37 LPTDKGVQHFQGSTPASAVHRPPLSACGHSSNI 69


>gi|164698498 septin 9 isoform b [Homo sapiens]
          Length = 579

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 68  QPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAAARTFP 125
           +P+ R V  L + S   ++ RVE+SG  P AA P  R        S   +E A    P
Sbjct: 65  EPSARHVDSLSQRSPKASLRRVELSG--PKAAEPVSRRTELSIDISSKQVENAGAIGP 120


>gi|164698494 septin 9 isoform a [Homo sapiens]
          Length = 586

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 68  QPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAAARTFP 125
           +P+ R V  L + S   ++ RVE+SG  P AA P  R        S   +E A    P
Sbjct: 72  EPSARHVDSLSQRSPKASLRRVELSG--PKAAEPVSRRTELSIDISSKQVENAGAIGP 127


>gi|116256489 septin 9 isoform c [Homo sapiens]
          Length = 568

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 68  QPNTRRVWHLGRNSWGGAVERVEVSGKTPTAAAPTVRAPAAQARASRSALEAAARTFP 125
           +P+ R V  L + S   ++ RVE+SG  P AA P  R        S   +E A    P
Sbjct: 54  EPSARHVDSLSQRSPKASLRRVELSG--PKAAEPVSRRTELSIDISSKQVENAGAIGP 109


>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
          Length = 727

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 92  SGKTPTAAAPTVRAPAAQARASRSALEAAARTFPGA 127
           S + P AA+P+  +P     A+ +A+ +A+ T P +
Sbjct: 320 SAQPPAAASPSAASPPLATAAAHTAIASASTTAPAS 355


>gi|125987596 sodium bicarbonate transporter 4 isoform a [Homo
           sapiens]
          Length = 1137

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 15/95 (15%)

Query: 29  GSLDVCAHQGDLPAPELCPQVHLCLPKSARRDHFPCNAPQPNTRRVWHLGRNSWGGAVER 88
           G LD   H+   P  + CP +H+ LP            PQ  T +  HL        +++
Sbjct: 11  GKLDHTNHRRRFPDQKECPPIHIGLPVP--------TYPQRKTDQKGHL------SGLQK 56

Query: 89  VEVSGKTPTAAAPTVRAPAAQARASRSALEAAART 123
           V   G  P      +  P + A +  S+++  +RT
Sbjct: 57  VH-WGLRPDQPQQELTGPGSGASSQDSSMDLISRT 90


>gi|19743827 sodium bicarbonate transporter 4 isoform c [Homo
           sapiens]
          Length = 1121

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 15/95 (15%)

Query: 29  GSLDVCAHQGDLPAPELCPQVHLCLPKSARRDHFPCNAPQPNTRRVWHLGRNSWGGAVER 88
           G LD   H+   P  + CP +H+ LP            PQ  T +  HL        +++
Sbjct: 11  GKLDHTNHRRRFPDQKECPPIHIGLPVP--------TYPQRKTDQKGHL------SGLQK 56

Query: 89  VEVSGKTPTAAAPTVRAPAAQARASRSALEAAART 123
           V   G  P      +  P + A +  S+++  +RT
Sbjct: 57  VH-WGLRPDQPQQELTGPGSGASSQDSSMDLISRT 90


>gi|73760403 Kruppel-like factor 10 isoform b [Homo sapiens]
          Length = 469

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 16/98 (16%)

Query: 5   EGKQSVLIPTPVAGVCKPPLSSAGGS--LDVCAHQGDLP-APELCPQV-------HLCLP 54
           +G    ++P PV    KPP+ S  G+    +    G  P A ++ PQ+       H+C  
Sbjct: 303 KGAVMFVVPQPVVQSSKPPVVSPNGTRLSPIAPAPGFSPSAAKVTPQIDSSRIRSHICSH 362

Query: 55  KSARRDHFPCNAPQPNTRRVWHLGRN----SWGGAVER 88
               + +F  +  + +TR   H G      SW G   R
Sbjct: 363 PGCGKTYFKSSHLKAHTRT--HTGEKPFSCSWKGCERR 398


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.129    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,597,609
Number of Sequences: 37866
Number of extensions: 346488
Number of successful extensions: 1305
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 104
length of query: 137
length of database: 18,247,518
effective HSP length: 91
effective length of query: 46
effective length of database: 14,801,712
effective search space: 680878752
effective search space used: 680878752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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