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Search of human proteins with 169168306
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169168306 PREDICTED: hypothetical protein [Homo sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168306 PREDICTED: hypothetical protein [Homo sapiens] 330 2e-91
gi|169168033 PREDICTED: hypothetical protein [Homo sapiens] 330 2e-91
gi|169167503 PREDICTED: hypothetical protein [Homo sapiens] 330 2e-91
gi|22748693 hypothetical protein LOC120534 [Homo sapiens] 108 1e-24
gi|224465235 euchromatic histone-lysine N-methyltransferase 1 is... 31 0.46
gi|224465233 euchromatic histone-lysine N-methyltransferase 1 is... 31 0.46
gi|34734064 fibulin 1 isoform B precursor [Homo sapiens] 30 0.61
gi|34734068 fibulin 1 isoform A precursor [Homo sapiens] 30 0.61
gi|34734066 fibulin 1 isoform D [Homo sapiens] 30 0.61
gi|34734062 fibulin 1 isoform C precursor [Homo sapiens] 30 0.61
gi|153946409 calbindin 2 isoform 1 [Homo sapiens] 30 0.79
gi|6031162 calbindin 2 isoform 22k [Homo sapiens] 30 0.79
gi|162951881 tousled-like kinase 2 isoform B [Homo sapiens] 30 1.0
gi|45643117 tousled-like kinase 2 isoform A [Homo sapiens] 30 1.0
gi|224451077 HBV PreS1-transactivated protein 3 isoform b [Homo ... 29 1.4
gi|93102389 HBV PreS1-transactivated protein 3 isoform a [Homo s... 29 1.4
gi|46399200 testis-specific bromodomain protein [Homo sapiens] 29 1.4
gi|46399198 testis-specific bromodomain protein [Homo sapiens] 29 1.4
gi|194353964 coiled-coil domain containing 157 [Homo sapiens] 29 1.4
gi|211971038 tousled-like kinase 1 isoform 3 [Homo sapiens] 29 1.4
gi|211971036 tousled-like kinase 1 isoform 2 [Homo sapiens] 29 1.4
gi|33636698 tousled-like kinase 1 isoform 1 [Homo sapiens] 29 1.4
gi|55770834 centromere protein F [Homo sapiens] 29 1.4
gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo sa... 29 1.8
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 28 3.0
gi|5032115 sprouty 2 [Homo sapiens] 28 3.0
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 28 3.9
gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens] 28 3.9
gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens] 28 3.9
gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens] 28 3.9
>gi|169168306 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 330 bits (847), Expect = 2e-91
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MNEQSEKNNSIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQ 60
MNEQSEKNNSIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQ
Sbjct: 1 MNEQSEKNNSIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQ 60
Query: 61 QKKKARMSKMNEYFSTKYKIMRKYDKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKC 120
QKKKARMSKMNEYFSTKYKIMRKYDKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKC
Sbjct: 61 QKKKARMSKMNEYFSTKYKIMRKYDKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKC 120
Query: 121 GPECRCNRRWVYDAIVTESGEVISTLPFNVPD 152
GPECRCNRRWVYDAIVTESGEVISTLPFNVPD
Sbjct: 121 GPECRCNRRWVYDAIVTESGEVISTLPFNVPD 152
>gi|169168033 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 330 bits (847), Expect = 2e-91
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MNEQSEKNNSIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQ 60
MNEQSEKNNSIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQ
Sbjct: 1 MNEQSEKNNSIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQ 60
Query: 61 QKKKARMSKMNEYFSTKYKIMRKYDKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKC 120
QKKKARMSKMNEYFSTKYKIMRKYDKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKC
Sbjct: 61 QKKKARMSKMNEYFSTKYKIMRKYDKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKC 120
Query: 121 GPECRCNRRWVYDAIVTESGEVISTLPFNVPD 152
GPECRCNRRWVYDAIVTESGEVISTLPFNVPD
Sbjct: 121 GPECRCNRRWVYDAIVTESGEVISTLPFNVPD 152
>gi|169167503 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 330 bits (847), Expect = 2e-91
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MNEQSEKNNSIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQ 60
MNEQSEKNNSIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQ
Sbjct: 1 MNEQSEKNNSIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQ 60
Query: 61 QKKKARMSKMNEYFSTKYKIMRKYDKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKC 120
QKKKARMSKMNEYFSTKYKIMRKYDKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKC
Sbjct: 61 QKKKARMSKMNEYFSTKYKIMRKYDKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKC 120
Query: 121 GPECRCNRRWVYDAIVTESGEVISTLPFNVPD 152
GPECRCNRRWVYDAIVTESGEVISTLPFNVPD
Sbjct: 121 GPECRCNRRWVYDAIVTESGEVISTLPFNVPD 152
>gi|22748693 hypothetical protein LOC120534 [Homo sapiens]
Length = 260
Score = 108 bits (271), Expect = 1e-24
Identities = 53/110 (48%), Positives = 72/110 (65%), Gaps = 5/110 (4%)
Query: 37 RQLKCLAFRNPGPQVADFNPETRQQKKKARMSKMNEYFSTKYKIMRK---YDKSGRLICN 93
+ L+ L F NPG Q +F PET +++K+ R++K S + I K YD G LI +
Sbjct: 147 KALRSLQFTNPGRQT-EFAPETGKREKR-RLTKNATAGSDRQVIPAKSKVYDSQGLLIFS 204
Query: 94 DADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYDAIVTESGEVI 143
DLCDCL+++CLGCFY CP C S KCG ECRC+R+W+Y+ I E GE+I
Sbjct: 205 GMDLCDCLDEDCLGCFYACPACGSTKCGAECRCDRKWLYEQIEIEGGEII 254
>gi|224465235 euchromatic histone-lysine N-methyltransferase 1
isoform 2 [Homo sapiens]
Length = 808
Score = 30.8 bits (68), Expect = 0.46
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 77 KYKIMRKYDKSGRLI-CNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYD 133
KY++MR +K+ L+ C D + C GC Y C N +C PE + R+ D
Sbjct: 559 KYELMRPSNKAPLLVLCEDHRGRMVKHQCCPGCGYFCTAGNFMECQPESSISHRFHKD 616
>gi|224465233 euchromatic histone-lysine N-methyltransferase 1
isoform 1 [Homo sapiens]
Length = 1298
Score = 30.8 bits (68), Expect = 0.46
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 77 KYKIMRKYDKSGRLI-CNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYD 133
KY++MR +K+ L+ C D + C GC Y C N +C PE + R+ D
Sbjct: 559 KYELMRPSNKAPLLVLCEDHRGRMVKHQCCPGCGYFCTAGNFMECQPESSISHRFHKD 616
>gi|34734064 fibulin 1 isoform B precursor [Homo sapiens]
Length = 601
Score = 30.4 bits (67), Expect = 0.61
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 92 CNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYDAI 135
C D D C+ NCL F S +C P+ +C ++ DA+
Sbjct: 260 CKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDAL 303
>gi|34734068 fibulin 1 isoform A precursor [Homo sapiens]
Length = 566
Score = 30.4 bits (67), Expect = 0.61
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 92 CNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYDAI 135
C D D C+ NCL F S +C P+ +C ++ DA+
Sbjct: 260 CKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDAL 303
>gi|34734066 fibulin 1 isoform D [Homo sapiens]
Length = 703
Score = 30.4 bits (67), Expect = 0.61
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 92 CNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYDAI 135
C D D C+ NCL F S +C P+ +C ++ DA+
Sbjct: 260 CKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDAL 303
>gi|34734062 fibulin 1 isoform C precursor [Homo sapiens]
Length = 683
Score = 30.4 bits (67), Expect = 0.61
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 92 CNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYDAI 135
C D D C+ NCL F S +C P+ +C ++ DA+
Sbjct: 260 CKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDAL 303
>gi|153946409 calbindin 2 isoform 1 [Homo sapiens]
Length = 271
Score = 30.0 bits (66), Expect = 0.79
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 48 GPQVADFNPETRQQKKKARMSKMNEYFSTKYK-IMRKYDKSGRLICNDADLCDCL--EKN 104
G ++ +F E + +K + M ++ F K K M+KYDK+ A+L L E+N
Sbjct: 38 GKELENFFQELEKARKGSGMMSKSDNFGEKMKEFMQKYDKNSDGKIEMAELAQILPTEEN 97
Query: 105 CLGCF 109
L CF
Sbjct: 98 FLLCF 102
>gi|6031162 calbindin 2 isoform 22k [Homo sapiens]
Length = 192
Score = 30.0 bits (66), Expect = 0.79
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 48 GPQVADFNPETRQQKKKARMSKMNEYFSTKYK-IMRKYDKSGRLICNDADLCDCL--EKN 104
G ++ +F E + +K + M ++ F K K M+KYDK+ A+L L E+N
Sbjct: 38 GKELENFFQELEKARKGSGMMSKSDNFGEKMKEFMQKYDKNSDGKIEMAELAQILPTEEN 97
Query: 105 CLGCF 109
L CF
Sbjct: 98 FLLCF 102
>gi|162951881 tousled-like kinase 2 isoform B [Homo sapiens]
Length = 718
Score = 29.6 bits (65), Expect = 1.0
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 31 QLQQIERQLKCLAFRNPGPQVADFNPETRQQKKKARMSKMN 71
Q ++IERQ K LA R P P + P T +QK+ R SK N
Sbjct: 299 QREEIERQRKMLAKRKP-PAMGQAPPATNEQKQ--RKSKTN 336
>gi|45643117 tousled-like kinase 2 isoform A [Homo sapiens]
Length = 750
Score = 29.6 bits (65), Expect = 1.0
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 31 QLQQIERQLKCLAFRNPGPQVADFNPETRQQKKKARMSKMN 71
Q ++IERQ K LA R P P + P T +QK+ R SK N
Sbjct: 331 QREEIERQRKMLAKRKP-PAMGQAPPATNEQKQ--RKSKTN 368
>gi|224451077 HBV PreS1-transactivated protein 3 isoform b [Homo
sapiens]
Length = 399
Score = 29.3 bits (64), Expect = 1.4
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 25 CQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQQKK------KARMSKMNEYFSTKY 78
CQ K+L IE++L CL + G + D N T + + +SK N+ F
Sbjct: 244 CQENLKKLTSIEKRLDCLEQKMKGKVMVDENTWTNLLSRVTLLETEMLLSKKNDEFIEFN 303
Query: 79 KIMRKYDKSGRLICNDADL 97
++ Y C+D DL
Sbjct: 304 EVSEDYAS-----CSDMDL 317
>gi|93102389 HBV PreS1-transactivated protein 3 isoform a [Homo
sapiens]
Length = 390
Score = 29.3 bits (64), Expect = 1.4
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 25 CQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQQKK------KARMSKMNEYFSTKY 78
CQ K+L IE++L CL + G + D N T + + +SK N+ F
Sbjct: 244 CQENLKKLTSIEKRLDCLEQKMKGKVMVDENTWTNLLSRVTLLETEMLLSKKNDEFIEFN 303
Query: 79 KIMRKYDKSGRLICNDADL 97
++ Y C+D DL
Sbjct: 304 EVSEDYAS-----CSDMDL 317
>gi|46399200 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 29.3 bits (64), Expect = 1.4
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 2 NEQSEKNNSIQERHTDHSFPEKNCQIG--QKQLQQIERQLKCLAFRNPGPQVADFNPETR 59
NE S + NS +D S E+ ++ Q+QL+ + +QL+ L+ + P ++ +++
Sbjct: 403 NEASSEGNS-----SDDSEDERVKRLAKLQEQLKAVHQQLQVLS-QVPFRKLNKKKEKSK 456
Query: 60 QQKKKARMSKMNEYFSTKYKIMRKYDKSGR 89
++KKK +++ NE + MR +KS R
Sbjct: 457 KEKKKEKVNNSNENPRKMCEQMRLKEKSKR 486
>gi|46399198 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 29.3 bits (64), Expect = 1.4
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 2 NEQSEKNNSIQERHTDHSFPEKNCQIG--QKQLQQIERQLKCLAFRNPGPQVADFNPETR 59
NE S + NS +D S E+ ++ Q+QL+ + +QL+ L+ + P ++ +++
Sbjct: 403 NEASSEGNS-----SDDSEDERVKRLAKLQEQLKAVHQQLQVLS-QVPFRKLNKKKEKSK 456
Query: 60 QQKKKARMSKMNEYFSTKYKIMRKYDKSGR 89
++KKK +++ NE + MR +KS R
Sbjct: 457 KEKKKEKVNNSNENPRKMCEQMRLKEKSKR 486
>gi|194353964 coiled-coil domain containing 157 [Homo sapiens]
Length = 752
Score = 29.3 bits (64), Expect = 1.4
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 7 KNNSIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQQKKKAR 66
K +QE + E+ Q ++Q+QQ+E Q++ L R G T K+KAR
Sbjct: 377 KAQQLQEEGERRAAAERQVQQLEEQVQQLEAQVQLLVGRLEGAGQQVCWASTELDKEKAR 436
Query: 67 MSKM 70
+ M
Sbjct: 437 VDSM 440
>gi|211971038 tousled-like kinase 1 isoform 3 [Homo sapiens]
Length = 670
Score = 29.3 bits (64), Expect = 1.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 30 KQLQQIERQLKCLAFRNP----GPQVADFNPETRQQKKKARMSKMNEYF 74
+Q + IERQ K LA R P Q N E +Q+K KA N+ F
Sbjct: 238 QQREDIERQRKLLAKRKPPTANNSQAPSTNSEPKQRKNKAVNGAENDPF 286
>gi|211971036 tousled-like kinase 1 isoform 2 [Homo sapiens]
Length = 718
Score = 29.3 bits (64), Expect = 1.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 30 KQLQQIERQLKCLAFRNP----GPQVADFNPETRQQKKKARMSKMNEYF 74
+Q + IERQ K LA R P Q N E +Q+K KA N+ F
Sbjct: 286 QQREDIERQRKLLAKRKPPTANNSQAPSTNSEPKQRKNKAVNGAENDPF 334
>gi|33636698 tousled-like kinase 1 isoform 1 [Homo sapiens]
Length = 766
Score = 29.3 bits (64), Expect = 1.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 30 KQLQQIERQLKCLAFRNP----GPQVADFNPETRQQKKKARMSKMNEYF 74
+Q + IERQ K LA R P Q N E +Q+K KA N+ F
Sbjct: 334 QQREDIERQRKLLAKRKPPTANNSQAPSTNSEPKQRKNKAVNGAENDPF 382
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 29.3 bits (64), Expect = 1.4
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 8 NNSIQERHTDHSFPEKNCQIGQKQLQQIERQLK-CLAFRNPGPQVA-----DFNPETRQQ 61
++ +Q + + +F E G+KQ++++E++LK C + Q A NP Q
Sbjct: 87 SHELQVKESQVNFQEGQLNSGKKQIEKLEQELKRCKSELERSQQAAQSADVSLNPCNTPQ 146
Query: 62 KKKARMSKMNEYFS-TKYK-IMRKYDK 86
K ++Y+S +KY+ + KY+K
Sbjct: 147 KIFTTPLTPSQYYSGSKYEDLKEKYNK 173
>gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo
sapiens]
Length = 596
Score = 28.9 bits (63), Expect = 1.8
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 10 SIQERHTDHSFPEKNCQIGQKQLQQIERQLKCLAFRNPGPQVADFNPETRQQKKKARMSK 69
S+ + HSF K+C+ Q +L++ LK L + G F+ ++ K ++M K
Sbjct: 3 SVSSLISGHSFHSKHCRASQYKLRK-SSHLKKLNRYSDGLLRFGFSQDSGHGKSSSKMGK 61
Query: 70 MNEYFSTK 77
++F K
Sbjct: 62 SEDFFYIK 69
>gi|126012562 low density lipoprotein-related protein 1 [Homo
sapiens]
Length = 4544
Score = 28.1 bits (61), Expect = 3.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 55 NPETRQQKKKARMSKMNEYFSTKYKIMRKYDKSGRL 90
N + ++K + ++N + ST+Y+++ + DK G L
Sbjct: 427 NSDNANAQQKTSVIRVNRFNSTEYQVVTRVDKGGAL 462
>gi|5032115 sprouty 2 [Homo sapiens]
Length = 315
Score = 28.1 bits (61), Expect = 3.0
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 92 CNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCNRRWVYD 133
C D C C E C YP P + C +C C+ + V D
Sbjct: 178 CEDCGKCKCKE-----CTYPRPLPSDWICDKQCLCSAQNVID 214
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 27.7 bits (60), Expect = 3.9
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 71 NEYFSTKYKIMRKY--DKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCN 127
NE +S K+ + D+S LIC +C C + C +CN N G C C+
Sbjct: 545 NEIYSGKFCECDNFNCDRSNGLICGGNGVCKC--RVC--------ECNPNYTGSACDCS 593
>gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]
Length = 789
Score = 27.7 bits (60), Expect = 3.9
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 71 NEYFSTKYKIMRKY--DKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCN 127
NE +S K+ + D+S LIC +C C + C +CN N G C C+
Sbjct: 545 NEIYSGKFCECDNFNCDRSNGLICGGNGVCKC--RVC--------ECNPNYTGSACDCS 593
>gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 27.7 bits (60), Expect = 3.9
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 71 NEYFSTKYKIMRKY--DKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCN 127
NE +S K+ + D+S LIC +C C + C +CN N G C C+
Sbjct: 545 NEIYSGKFCECDNFNCDRSNGLICGGNGVCKC--RVC--------ECNPNYTGSACDCS 593
>gi|19743823 integrin beta 1 isoform 1A precursor [Homo sapiens]
Length = 798
Score = 27.7 bits (60), Expect = 3.9
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 71 NEYFSTKYKIMRKY--DKSGRLICNDADLCDCLEKNCLGCFYPCPKCNSNKCGPECRCN 127
NE +S K+ + D+S LIC +C C + C +CN N G C C+
Sbjct: 545 NEIYSGKFCECDNFNCDRSNGLICGGNGVCKC--RVC--------ECNPNYTGSACDCS 593
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,736,146
Number of Sequences: 37866
Number of extensions: 299895
Number of successful extensions: 1075
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 59
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.