Guide to the Human Genome
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Name: LOC644100 Sequence: fasta or formatted (152aa) NCBI GI: 169168306
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {152aa} PREDICTED: hypothetical protein
alt mRNA {152aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          5           1
 C cysteine            7.9         12           1
 D aspartate           5.3          8           1
 E glutamate           7.2         11           1
 F phenylalanine       3.9          6           1
 G glycine             3.9          6           1
 H histidine           1.3          2           1
 I isoleucine          4.6          7           1
 K lysine              9.9         15           3
 L leucine             5.3          8           1
 M methionine          2.6          4           1
 N asparagine          8.6         13           2
 P proline             5.9          9           1
 Q glutamine           7.2         11           2
 R arginine            6.6         10           2
 S serine              5.9          9           1
 T threonine           3.3          5           1
 V valine              3.3          5           1
 W tryptophan          0.7          1           1
 Y tyrosine            3.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC644100             1.000   PREDICTED: hypothetical protein 
LOC644100             1.000   PREDICTED: hypothetical protein 
C11orf46              0.272   hypothetical protein LOC120534 
EHMT1                 0.020   euchromatic histone-lysine N-methyltransferase 1 is...
EHMT1                 0.020   euchromatic histone-lysine N-methyltransferase 1 is...
FBLN1                 0.016   fibulin 1 isoform B precursor 
FBLN1                 0.016   fibulin 1 isoform A precursor 
FBLN1                 0.016   fibulin 1 isoform D 
FBLN1                 0.016   fibulin 1 isoform C precursor 
CALB2                 0.016   calbindin 2 isoform 1 
CALB2                 0.016   calbindin 2 isoform 22k 
TLK2                  0.016   tousled-like kinase 2 isoform B 
TLK2                  0.016   tousled-like kinase 2 isoform A 
KIAA1712              0.013   HBV PreS1-transactivated protein 3 isoform b 
KIAA1712              0.013   HBV PreS1-transactivated protein 3 isoform a 
BRDT                  0.013   testis-specific bromodomain protein 
BRDT                  0.013   testis-specific bromodomain protein 
CCDC157               0.013   coiled-coil domain containing 157 
TLK1                  0.013   tousled-like kinase 1 isoform 3 
TLK1                  0.013   tousled-like kinase 1 isoform 2 
TLK1                  0.013   tousled-like kinase 1 isoform 1 
CENPF                 0.013   centromere protein F 
LZTS1                 0.013   leucine zipper, putative tumor suppressor 1 
LRP1                  0.010   low density lipoprotein-related protein 1 
SPRY2                 0.010   sprouty 2 
ITGB1                 0.010   integrin beta 1 isoform 1C-1 precursor 
ITGB1                 0.010   integrin beta 1 isoform 1B precursor 
ITGB1                 0.010   integrin beta 1 isoform 1A precursor 
ITGB1                 0.010   integrin beta 1 isoform 1A precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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