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Search of human proteins with 169168272
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169168272 PREDICTED: hypothetical protein [Homo sapiens]
(98 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168272 PREDICTED: hypothetical protein [Homo sapiens] 203 3e-53
gi|169167956 PREDICTED: hypothetical protein [Homo sapiens] 203 3e-53
gi|169167416 PREDICTED: hypothetical protein [Homo sapiens] 203 3e-53
gi|239756405 PREDICTED: hypothetical protein [Homo sapiens] 168 1e-42
gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo ... 168 1e-42
gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo ... 168 1e-42
gi|239757181 PREDICTED: hypothetical protein XP_002345195 [Homo ... 105 1e-23
gi|239751691 PREDICTED: hypothetical protein [Homo sapiens] 105 1e-23
gi|239746195 PREDICTED: hypothetical protein XP_002343673 [Homo ... 105 1e-23
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ... 28 2.1
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ... 28 2.1
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ... 28 2.1
gi|21704279 jagged 2 isoform b precursor [Homo sapiens] 28 2.1
gi|21704277 jagged 2 isoform a precursor [Homo sapiens] 28 2.1
gi|4757960 cadherin 1, type 1 preproprotein [Homo sapiens] 27 3.5
gi|35493952 ubiquitin protein ligase E3B [Homo sapiens] 26 7.8
gi|35493959 ubiquitin protein ligase E3B [Homo sapiens] 26 7.8
>gi|169168272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 98
Score = 203 bits (516), Expect = 3e-53
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS
Sbjct: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP
Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
>gi|169167956 PREDICTED: hypothetical protein [Homo sapiens]
Length = 98
Score = 203 bits (516), Expect = 3e-53
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS
Sbjct: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP
Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
>gi|169167416 PREDICTED: hypothetical protein [Homo sapiens]
Length = 98
Score = 203 bits (516), Expect = 3e-53
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS
Sbjct: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP
Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
>gi|239756405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 168 bits (425), Expect = 1e-42
Identities = 82/98 (83%), Positives = 89/98 (90%)
Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
+RMWS+KATTRSADMGEACRPAAA +GAT G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 42 IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
GKKGM RAHSTALKS AASSQMFS+P+MLLGCMHWLP
Sbjct: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139
>gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo
sapiens]
Length = 144
Score = 168 bits (425), Expect = 1e-42
Identities = 82/98 (83%), Positives = 89/98 (90%)
Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
+RMWS+KATTRSADMGEACRPAAA +GAT G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 42 IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
GKKGM RAHSTALKS AASSQMFS+P+MLLGCMHWLP
Sbjct: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139
>gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo
sapiens]
Length = 144
Score = 168 bits (425), Expect = 1e-42
Identities = 82/98 (83%), Positives = 89/98 (90%)
Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
+RMWS+KATTRSADMGEACRPAAA +GAT G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 42 IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
GKKGM RAHSTALKS AASSQMFS+P+MLLGCMHWLP
Sbjct: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139
>gi|239757181 PREDICTED: hypothetical protein XP_002345195 [Homo
sapiens]
Length = 129
Score = 105 bits (261), Expect = 1e-23
Identities = 57/86 (66%), Positives = 60/86 (69%)
Query: 2 RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSG 61
R WSMKAT RSA +G A RPAAAS+GA C G AA ST SSLQ+RRS TWS SG
Sbjct: 26 RTWSMKATARSAAIGAAWRPAAASSGAVCRGSAACAAFSTKSSLQLRRSSATWSATGSSG 85
Query: 62 KKGMLRAHSTALKSRRAASSQMFSMP 87
KKG RAHST LKS RAASS SMP
Sbjct: 86 KKGAWRAHSTVLKSSRAASSHTLSMP 111
>gi|239751691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 105 bits (261), Expect = 1e-23
Identities = 57/86 (66%), Positives = 60/86 (69%)
Query: 2 RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSG 61
R WSMKAT RSA +G A RPAAAS+GA C G AA ST SSLQ+RRS TWS SG
Sbjct: 26 RTWSMKATARSAAIGAAWRPAAASSGAVCRGSAACAAFSTKSSLQLRRSSATWSATGSSG 85
Query: 62 KKGMLRAHSTALKSRRAASSQMFSMP 87
KKG RAHST LKS RAASS SMP
Sbjct: 86 KKGAWRAHSTVLKSSRAASSHTLSMP 111
>gi|239746195 PREDICTED: hypothetical protein XP_002343673 [Homo
sapiens]
Length = 129
Score = 105 bits (261), Expect = 1e-23
Identities = 57/86 (66%), Positives = 60/86 (69%)
Query: 2 RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSG 61
R WSMKAT RSA +G A RPAAAS+GA C G AA ST SSLQ+RRS TWS SG
Sbjct: 26 RTWSMKATARSAAIGAAWRPAAASSGAVCRGSAACAAFSTKSSLQLRRSSATWSATGSSG 85
Query: 62 KKGMLRAHSTALKSRRAASSQMFSMP 87
KKG RAHST LKS RAASS SMP
Sbjct: 86 KKGAWRAHSTVLKSSRAASSHTLSMP 111
>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
sapiens]
Length = 274
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 12 SADMGEACRPAAASNGATCSGIEHWAALSTNSSL 45
SA GEA RP + S S +E W S +S+L
Sbjct: 224 SAQRGEATRPRSQSQLVAASDLEPWTPHSPHSAL 257
>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
sapiens]
Length = 274
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 12 SADMGEACRPAAASNGATCSGIEHWAALSTNSSL 45
SA GEA RP + S S +E W S +S+L
Sbjct: 224 SAQRGEATRPRSQSQLVAASDLEPWTPHSPHSAL 257
>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
sapiens]
Length = 274
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 12 SADMGEACRPAAASNGATCSGIEHWAALSTNSSL 45
SA GEA RP + S S +E W S +S+L
Sbjct: 224 SAQRGEATRPRSQSQLVAASDLEPWTPHSPHSAL 257
>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
Length = 1200
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 17/65 (26%)
Query: 7 KATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSGKKGML 66
K +T + +C P NG TC G S ++S ICR G +G
Sbjct: 705 KGSTCAVAKNSSCLPNPCVNGGTCVG-----------------SGASFSCICRDGWEGRT 747
Query: 67 RAHST 71
H+T
Sbjct: 748 CTHNT 752
>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
Length = 1238
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 17/65 (26%)
Query: 7 KATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSGKKGML 66
K +T + +C P NG TC G S ++S ICR G +G
Sbjct: 743 KGSTCAVAKNSSCLPNPCVNGGTCVG-----------------SGASFSCICRDGWEGRT 785
Query: 67 RAHST 71
H+T
Sbjct: 786 CTHNT 790
>gi|4757960 cadherin 1, type 1 preproprotein [Homo sapiens]
Length = 882
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 2 RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTW---SVIC 58
R +S K T + +G RP + A+ SGI+ NSS +RR + W + C
Sbjct: 108 RKFSTKVTLNT--VGHHHRPPP--HQASVSGIQAELLTFPNSSPGLRRQKRDWVIPPISC 163
Query: 59 RSGKKGMLRAHSTALKSRRAASSQMF 84
+KG + +KS + ++F
Sbjct: 164 PENEKGPFPKNLVQIKSNKDKEGKVF 189
>gi|35493952 ubiquitin protein ligase E3B [Homo sapiens]
Length = 1068
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 54 WSVICRSGKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWL 97
W+ IC G G L+ L + S Q+ +M ++ C L
Sbjct: 496 WAFICELGPHGGLKLFLECLNNDTEESKQLLAMLMLFCDCSRHL 539
>gi|35493959 ubiquitin protein ligase E3B [Homo sapiens]
Length = 1068
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 54 WSVICRSGKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWL 97
W+ IC G G L+ L + S Q+ +M ++ C L
Sbjct: 496 WAFICELGPHGGLKLFLECLNNDTEESKQLLAMLMLFCDCSRHL 539
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.123 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,299,044
Number of Sequences: 37866
Number of extensions: 102775
Number of successful extensions: 473
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 19
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.