Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100129010 Sequence: fasta or formatted (98aa) NCBI GI: 169167416
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {98aa} PREDICTED: hypothetical protein
alt mRNA {98aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         13           3
 C cysteine            4.1          4           1
 D aspartate           2.0          2           1
 E glutamate           2.0          2           1
 F phenylalanine       1.0          1           1
 G glycine             6.1          6           1
 H histidine           3.1          3           1
 I isoleucine          3.1          3           1
 K lysine              4.1          4           2
 L leucine             7.1          7           2
 M methionine          9.2          9           1
 N asparagine          2.0          2           1
 P proline             3.1          3           1
 Q glutamine           2.0          2           1
 R arginine           10.2         10           2
 S serine             15.3         15           2
 T threonine           6.1          6           2
 V valine              2.0          2           1
 W tryptophan          4.1          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129010          1.000   PREDICTED: hypothetical protein 
LOC100129010          1.000   PREDICTED: hypothetical protein 
LOC100292325          0.803   PREDICTED: hypothetical protein 
LOC100290350          0.803   PREDICTED: hypothetical protein XP_002347608 
LOC100288183          0.803   PREDICTED: hypothetical protein XP_002343427 
LOC100291887          0.449   PREDICTED: hypothetical protein XP_002345195 
LOC100287051          0.449   PREDICTED: hypothetical protein 
LOC100287051          0.449   PREDICTED: hypothetical protein XP_002343673 
LOC100291948          0.017   PREDICTED: hypothetical protein XP_002345897 
LOC100291512          0.017   PREDICTED: hypothetical protein XP_002346753 
LOC100288180          0.017   PREDICTED: hypothetical protein XP_002342610 
JAG2                  0.017   jagged 2 isoform b precursor 
JAG2                  0.017   jagged 2 isoform a precursor 
CDH1                  0.011   cadherin 1, type 1 preproprotein 
UBE3B                 0.006   ubiquitin protein ligase E3B 
UBE3B                 0.006   ubiquitin protein ligase E3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press