BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169167416 PREDICTED: hypothetical protein [Homo sapiens] (98 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169168272 PREDICTED: hypothetical protein [Homo sapiens] 203 3e-53 gi|169167956 PREDICTED: hypothetical protein [Homo sapiens] 203 3e-53 gi|169167416 PREDICTED: hypothetical protein [Homo sapiens] 203 3e-53 gi|239756405 PREDICTED: hypothetical protein [Homo sapiens] 168 1e-42 gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo ... 168 1e-42 gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo ... 168 1e-42 gi|239757181 PREDICTED: hypothetical protein XP_002345195 [Homo ... 105 1e-23 gi|239751691 PREDICTED: hypothetical protein [Homo sapiens] 105 1e-23 gi|239746195 PREDICTED: hypothetical protein XP_002343673 [Homo ... 105 1e-23 gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ... 28 2.1 gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ... 28 2.1 gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ... 28 2.1 gi|21704279 jagged 2 isoform b precursor [Homo sapiens] 28 2.1 gi|21704277 jagged 2 isoform a precursor [Homo sapiens] 28 2.1 gi|4757960 cadherin 1, type 1 preproprotein [Homo sapiens] 27 3.5 gi|35493952 ubiquitin protein ligase E3B [Homo sapiens] 26 7.8 gi|35493959 ubiquitin protein ligase E3B [Homo sapiens] 26 7.8 >gi|169168272 PREDICTED: hypothetical protein [Homo sapiens] Length = 98 Score = 203 bits (516), Expect = 3e-53 Identities = 98/98 (100%), Positives = 98/98 (100%) Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS Sbjct: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60 Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98 >gi|169167956 PREDICTED: hypothetical protein [Homo sapiens] Length = 98 Score = 203 bits (516), Expect = 3e-53 Identities = 98/98 (100%), Positives = 98/98 (100%) Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS Sbjct: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60 Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98 >gi|169167416 PREDICTED: hypothetical protein [Homo sapiens] Length = 98 Score = 203 bits (516), Expect = 3e-53 Identities = 98/98 (100%), Positives = 98/98 (100%) Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS Sbjct: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60 Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98 >gi|239756405 PREDICTED: hypothetical protein [Homo sapiens] Length = 144 Score = 168 bits (425), Expect = 1e-42 Identities = 82/98 (83%), Positives = 89/98 (90%) Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60 +RMWS+KATTRSADMGEACRPAAA +GAT G+EH AA +TNSSLQVRRSR TWSVICRS Sbjct: 42 IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101 Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98 GKKGM RAHSTALKS AASSQMFS+P+MLLGCMHWLP Sbjct: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139 >gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo sapiens] Length = 144 Score = 168 bits (425), Expect = 1e-42 Identities = 82/98 (83%), Positives = 89/98 (90%) Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60 +RMWS+KATTRSADMGEACRPAAA +GAT G+EH AA +TNSSLQVRRSR TWSVICRS Sbjct: 42 IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101 Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98 GKKGM RAHSTALKS AASSQMFS+P+MLLGCMHWLP Sbjct: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139 >gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo sapiens] Length = 144 Score = 168 bits (425), Expect = 1e-42 Identities = 82/98 (83%), Positives = 89/98 (90%) Query: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60 +RMWS+KATTRSADMGEACRPAAA +GAT G+EH AA +TNSSLQVRRSR TWSVICRS Sbjct: 42 IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101 Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98 GKKGM RAHSTALKS AASSQMFS+P+MLLGCMHWLP Sbjct: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139 >gi|239757181 PREDICTED: hypothetical protein XP_002345195 [Homo sapiens] Length = 129 Score = 105 bits (261), Expect = 1e-23 Identities = 57/86 (66%), Positives = 60/86 (69%) Query: 2 RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSG 61 R WSMKAT RSA +G A RPAAAS+GA C G AA ST SSLQ+RRS TWS SG Sbjct: 26 RTWSMKATARSAAIGAAWRPAAASSGAVCRGSAACAAFSTKSSLQLRRSSATWSATGSSG 85 Query: 62 KKGMLRAHSTALKSRRAASSQMFSMP 87 KKG RAHST LKS RAASS SMP Sbjct: 86 KKGAWRAHSTVLKSSRAASSHTLSMP 111 >gi|239751691 PREDICTED: hypothetical protein [Homo sapiens] Length = 129 Score = 105 bits (261), Expect = 1e-23 Identities = 57/86 (66%), Positives = 60/86 (69%) Query: 2 RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSG 61 R WSMKAT RSA +G A RPAAAS+GA C G AA ST SSLQ+RRS TWS SG Sbjct: 26 RTWSMKATARSAAIGAAWRPAAASSGAVCRGSAACAAFSTKSSLQLRRSSATWSATGSSG 85 Query: 62 KKGMLRAHSTALKSRRAASSQMFSMP 87 KKG RAHST LKS RAASS SMP Sbjct: 86 KKGAWRAHSTVLKSSRAASSHTLSMP 111 >gi|239746195 PREDICTED: hypothetical protein XP_002343673 [Homo sapiens] Length = 129 Score = 105 bits (261), Expect = 1e-23 Identities = 57/86 (66%), Positives = 60/86 (69%) Query: 2 RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSG 61 R WSMKAT RSA +G A RPAAAS+GA C G AA ST SSLQ+RRS TWS SG Sbjct: 26 RTWSMKATARSAAIGAAWRPAAASSGAVCRGSAACAAFSTKSSLQLRRSSATWSATGSSG 85 Query: 62 KKGMLRAHSTALKSRRAASSQMFSMP 87 KKG RAHST LKS RAASS SMP Sbjct: 86 KKGAWRAHSTVLKSSRAASSHTLSMP 111 >gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo sapiens] Length = 274 Score = 27.7 bits (60), Expect = 2.1 Identities = 14/34 (41%), Positives = 18/34 (52%) Query: 12 SADMGEACRPAAASNGATCSGIEHWAALSTNSSL 45 SA GEA RP + S S +E W S +S+L Sbjct: 224 SAQRGEATRPRSQSQLVAASDLEPWTPHSPHSAL 257 >gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo sapiens] Length = 274 Score = 27.7 bits (60), Expect = 2.1 Identities = 14/34 (41%), Positives = 18/34 (52%) Query: 12 SADMGEACRPAAASNGATCSGIEHWAALSTNSSL 45 SA GEA RP + S S +E W S +S+L Sbjct: 224 SAQRGEATRPRSQSQLVAASDLEPWTPHSPHSAL 257 >gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo sapiens] Length = 274 Score = 27.7 bits (60), Expect = 2.1 Identities = 14/34 (41%), Positives = 18/34 (52%) Query: 12 SADMGEACRPAAASNGATCSGIEHWAALSTNSSL 45 SA GEA RP + S S +E W S +S+L Sbjct: 224 SAQRGEATRPRSQSQLVAASDLEPWTPHSPHSAL 257 >gi|21704279 jagged 2 isoform b precursor [Homo sapiens] Length = 1200 Score = 27.7 bits (60), Expect = 2.1 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 17/65 (26%) Query: 7 KATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSGKKGML 66 K +T + +C P NG TC G S ++S ICR G +G Sbjct: 705 KGSTCAVAKNSSCLPNPCVNGGTCVG-----------------SGASFSCICRDGWEGRT 747 Query: 67 RAHST 71 H+T Sbjct: 748 CTHNT 752 >gi|21704277 jagged 2 isoform a precursor [Homo sapiens] Length = 1238 Score = 27.7 bits (60), Expect = 2.1 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 17/65 (26%) Query: 7 KATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSGKKGML 66 K +T + +C P NG TC G S ++S ICR G +G Sbjct: 743 KGSTCAVAKNSSCLPNPCVNGGTCVG-----------------SGASFSCICRDGWEGRT 785 Query: 67 RAHST 71 H+T Sbjct: 786 CTHNT 790 >gi|4757960 cadherin 1, type 1 preproprotein [Homo sapiens] Length = 882 Score = 26.9 bits (58), Expect = 3.5 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%) Query: 2 RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTW---SVIC 58 R +S K T + +G RP + A+ SGI+ NSS +RR + W + C Sbjct: 108 RKFSTKVTLNT--VGHHHRPPP--HQASVSGIQAELLTFPNSSPGLRRQKRDWVIPPISC 163 Query: 59 RSGKKGMLRAHSTALKSRRAASSQMF 84 +KG + +KS + ++F Sbjct: 164 PENEKGPFPKNLVQIKSNKDKEGKVF 189 >gi|35493952 ubiquitin protein ligase E3B [Homo sapiens] Length = 1068 Score = 25.8 bits (55), Expect = 7.8 Identities = 12/44 (27%), Positives = 19/44 (43%) Query: 54 WSVICRSGKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWL 97 W+ IC G G L+ L + S Q+ +M ++ C L Sbjct: 496 WAFICELGPHGGLKLFLECLNNDTEESKQLLAMLMLFCDCSRHL 539 >gi|35493959 ubiquitin protein ligase E3B [Homo sapiens] Length = 1068 Score = 25.8 bits (55), Expect = 7.8 Identities = 12/44 (27%), Positives = 19/44 (43%) Query: 54 WSVICRSGKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWL 97 W+ IC G G L+ L + S Q+ +M ++ C L Sbjct: 496 WAFICELGPHGGLKLFLECLNNDTEESKQLLAMLMLFCDCSRHL 539 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.123 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,299,044 Number of Sequences: 37866 Number of extensions: 102775 Number of successful extensions: 473 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 455 Number of HSP's gapped (non-prelim): 19 length of query: 98 length of database: 18,247,518 effective HSP length: 69 effective length of query: 29 effective length of database: 15,634,764 effective search space: 453408156 effective search space used: 453408156 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.