Guide to the Human Genome
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Search of human proteins with 169167416

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169167416 PREDICTED: hypothetical protein [Homo sapiens]
         (98 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169168272 PREDICTED: hypothetical protein [Homo sapiens]           203   3e-53
gi|169167956 PREDICTED: hypothetical protein [Homo sapiens]           203   3e-53
gi|169167416 PREDICTED: hypothetical protein [Homo sapiens]           203   3e-53
gi|239756405 PREDICTED: hypothetical protein [Homo sapiens]           168   1e-42
gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo ...   168   1e-42
gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo ...   168   1e-42
gi|239757181 PREDICTED: hypothetical protein XP_002345195 [Homo ...   105   1e-23
gi|239751691 PREDICTED: hypothetical protein [Homo sapiens]           105   1e-23
gi|239746195 PREDICTED: hypothetical protein XP_002343673 [Homo ...   105   1e-23
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ...    28   2.1  
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ...    28   2.1  
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ...    28   2.1  
gi|21704279 jagged 2 isoform b precursor [Homo sapiens]                28   2.1  
gi|21704277 jagged 2 isoform a precursor [Homo sapiens]                28   2.1  
gi|4757960 cadherin 1, type 1 preproprotein [Homo sapiens]             27   3.5  
gi|35493952 ubiquitin protein ligase E3B [Homo sapiens]                26   7.8  
gi|35493959 ubiquitin protein ligase E3B [Homo sapiens]                26   7.8  

>gi|169168272 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 98

 Score =  203 bits (516), Expect = 3e-53
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
          MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS
Sbjct: 1  MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60

Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
          GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP
Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98


>gi|169167956 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 98

 Score =  203 bits (516), Expect = 3e-53
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
          MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS
Sbjct: 1  MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60

Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
          GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP
Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98


>gi|169167416 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 98

 Score =  203 bits (516), Expect = 3e-53
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
          MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS
Sbjct: 1  MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60

Query: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
          GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP
Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98


>gi|239756405 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 144

 Score =  168 bits (425), Expect = 1e-42
 Identities = 82/98 (83%), Positives = 89/98 (90%)

Query: 1   MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
           +RMWS+KATTRSADMGEACRPAAA +GAT  G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 42  IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101

Query: 61  GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
           GKKGM RAHSTALKS  AASSQMFS+P+MLLGCMHWLP
Sbjct: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139


>gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo
           sapiens]
          Length = 144

 Score =  168 bits (425), Expect = 1e-42
 Identities = 82/98 (83%), Positives = 89/98 (90%)

Query: 1   MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
           +RMWS+KATTRSADMGEACRPAAA +GAT  G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 42  IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101

Query: 61  GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
           GKKGM RAHSTALKS  AASSQMFS+P+MLLGCMHWLP
Sbjct: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139


>gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo
           sapiens]
          Length = 144

 Score =  168 bits (425), Expect = 1e-42
 Identities = 82/98 (83%), Positives = 89/98 (90%)

Query: 1   MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
           +RMWS+KATTRSADMGEACRPAAA +GAT  G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 42  IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101

Query: 61  GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
           GKKGM RAHSTALKS  AASSQMFS+P+MLLGCMHWLP
Sbjct: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139


>gi|239757181 PREDICTED: hypothetical protein XP_002345195 [Homo
           sapiens]
          Length = 129

 Score =  105 bits (261), Expect = 1e-23
 Identities = 57/86 (66%), Positives = 60/86 (69%)

Query: 2   RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSG 61
           R WSMKAT RSA +G A RPAAAS+GA C G    AA ST SSLQ+RRS  TWS    SG
Sbjct: 26  RTWSMKATARSAAIGAAWRPAAASSGAVCRGSAACAAFSTKSSLQLRRSSATWSATGSSG 85

Query: 62  KKGMLRAHSTALKSRRAASSQMFSMP 87
           KKG  RAHST LKS RAASS   SMP
Sbjct: 86  KKGAWRAHSTVLKSSRAASSHTLSMP 111


>gi|239751691 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 129

 Score =  105 bits (261), Expect = 1e-23
 Identities = 57/86 (66%), Positives = 60/86 (69%)

Query: 2   RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSG 61
           R WSMKAT RSA +G A RPAAAS+GA C G    AA ST SSLQ+RRS  TWS    SG
Sbjct: 26  RTWSMKATARSAAIGAAWRPAAASSGAVCRGSAACAAFSTKSSLQLRRSSATWSATGSSG 85

Query: 62  KKGMLRAHSTALKSRRAASSQMFSMP 87
           KKG  RAHST LKS RAASS   SMP
Sbjct: 86  KKGAWRAHSTVLKSSRAASSHTLSMP 111


>gi|239746195 PREDICTED: hypothetical protein XP_002343673 [Homo
           sapiens]
          Length = 129

 Score =  105 bits (261), Expect = 1e-23
 Identities = 57/86 (66%), Positives = 60/86 (69%)

Query: 2   RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSG 61
           R WSMKAT RSA +G A RPAAAS+GA C G    AA ST SSLQ+RRS  TWS    SG
Sbjct: 26  RTWSMKATARSAAIGAAWRPAAASSGAVCRGSAACAAFSTKSSLQLRRSSATWSATGSSG 85

Query: 62  KKGMLRAHSTALKSRRAASSQMFSMP 87
           KKG  RAHST LKS RAASS   SMP
Sbjct: 86  KKGAWRAHSTVLKSSRAASSHTLSMP 111


>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
           sapiens]
          Length = 274

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 12  SADMGEACRPAAASNGATCSGIEHWAALSTNSSL 45
           SA  GEA RP + S     S +E W   S +S+L
Sbjct: 224 SAQRGEATRPRSQSQLVAASDLEPWTPHSPHSAL 257


>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
           sapiens]
          Length = 274

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 12  SADMGEACRPAAASNGATCSGIEHWAALSTNSSL 45
           SA  GEA RP + S     S +E W   S +S+L
Sbjct: 224 SAQRGEATRPRSQSQLVAASDLEPWTPHSPHSAL 257


>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
           sapiens]
          Length = 274

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 12  SADMGEACRPAAASNGATCSGIEHWAALSTNSSL 45
           SA  GEA RP + S     S +E W   S +S+L
Sbjct: 224 SAQRGEATRPRSQSQLVAASDLEPWTPHSPHSAL 257


>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
          Length = 1200

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 17/65 (26%)

Query: 7   KATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSGKKGML 66
           K +T +     +C P    NG TC G                 S  ++S ICR G +G  
Sbjct: 705 KGSTCAVAKNSSCLPNPCVNGGTCVG-----------------SGASFSCICRDGWEGRT 747

Query: 67  RAHST 71
             H+T
Sbjct: 748 CTHNT 752


>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
          Length = 1238

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 17/65 (26%)

Query: 7   KATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRSGKKGML 66
           K +T +     +C P    NG TC G                 S  ++S ICR G +G  
Sbjct: 743 KGSTCAVAKNSSCLPNPCVNGGTCVG-----------------SGASFSCICRDGWEGRT 785

Query: 67  RAHST 71
             H+T
Sbjct: 786 CTHNT 790


>gi|4757960 cadherin 1, type 1 preproprotein [Homo sapiens]
          Length = 882

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 2   RMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTW---SVIC 58
           R +S K T  +  +G   RP    + A+ SGI+       NSS  +RR +  W    + C
Sbjct: 108 RKFSTKVTLNT--VGHHHRPPP--HQASVSGIQAELLTFPNSSPGLRRQKRDWVIPPISC 163

Query: 59  RSGKKGMLRAHSTALKSRRAASSQMF 84
              +KG    +   +KS +    ++F
Sbjct: 164 PENEKGPFPKNLVQIKSNKDKEGKVF 189


>gi|35493952 ubiquitin protein ligase E3B [Homo sapiens]
          Length = 1068

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 54  WSVICRSGKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWL 97
           W+ IC  G  G L+     L +    S Q+ +M ++   C   L
Sbjct: 496 WAFICELGPHGGLKLFLECLNNDTEESKQLLAMLMLFCDCSRHL 539


>gi|35493959 ubiquitin protein ligase E3B [Homo sapiens]
          Length = 1068

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 54  WSVICRSGKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWL 97
           W+ IC  G  G L+     L +    S Q+ +M ++   C   L
Sbjct: 496 WAFICELGPHGGLKLFLECLNNDTEESKQLLAMLMLFCDCSRHL 539


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.123    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,299,044
Number of Sequences: 37866
Number of extensions: 102775
Number of successful extensions: 473
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 19
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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