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Search of human proteins with 169164173
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169164173 PREDICTED: hypothetical protein [Homo sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169164173 PREDICTED: hypothetical protein [Homo sapiens] 235 5e-63
gi|13376844 ring finger protein 39 isoform 1 [Homo sapiens] 30 0.32
gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens] 30 0.32
gi|10863879 solute carrier family 5 (sodium-dependent vitamin tr... 28 1.2
gi|83035133 coiled-coil domain containing 108 isoform 2 [Homo sa... 28 1.2
gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo sa... 28 1.2
gi|223029432 solute carrier family 2 (facilitated glucose transp... 27 3.5
gi|118600975 syntaxin binding protein 3 [Homo sapiens] 27 3.5
gi|22748701 zinc finger protein 641 [Homo sapiens] 27 4.6
gi|46195763 metastasis suppressor 1-like [Homo sapiens] 26 6.0
gi|7657465 podocalyxin-like 2 [Homo sapiens] 26 6.0
gi|239756340 PREDICTED: hypothetical LOC645212, partial [Homo sa... 26 7.8
gi|239750823 PREDICTED: hypothetical LOC645212 [Homo sapiens] 26 7.8
gi|239745185 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|188528675 slit homolog 1 [Homo sapiens] 26 7.8
gi|38201677 teashirt family zinc finger 1 [Homo sapiens] 26 7.8
>gi|169164173 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 235 bits (600), Expect = 5e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MSPQAPSLSKGSRESLESSSWCPLCPAVGNGSGFSTPTTLTSCTVWGLPGLSNTHLCGWE 60
MSPQAPSLSKGSRESLESSSWCPLCPAVGNGSGFSTPTTLTSCTVWGLPGLSNTHLCGWE
Sbjct: 1 MSPQAPSLSKGSRESLESSSWCPLCPAVGNGSGFSTPTTLTSCTVWGLPGLSNTHLCGWE 60
Query: 61 LGSATSLQLLRDTAIQLRQGLTAAPCFLPMAVLLIYTESSHLPSLPFTNRFTL 113
LGSATSLQLLRDTAIQLRQGLTAAPCFLPMAVLLIYTESSHLPSLPFTNRFTL
Sbjct: 61 LGSATSLQLLRDTAIQLRQGLTAAPCFLPMAVLLIYTESSHLPSLPFTNRFTL 113
>gi|13376844 ring finger protein 39 isoform 1 [Homo sapiens]
Length = 420
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 1 MSPQAPSLSKGSRESLESSSWCPLCPAVGNGSGFSTPTTLT-------SCTV--WGLPGL 51
+S AP L G E LE + CPLC G F P L +C WG P
Sbjct: 67 LSMDAPELGPGLVERLEQLATCPLC-----GGSFEDPVLLACEHSFCRACLARRWGTPPA 121
Query: 52 SNT 54
+ T
Sbjct: 122 TGT 124
>gi|25777716 ring finger protein 39 isoform 2 [Homo sapiens]
Length = 354
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 1 MSPQAPSLSKGSRESLESSSWCPLCPAVGNGSGFSTPTTLT-------SCTV--WGLPGL 51
+S AP L G E LE + CPLC G F P L +C WG P
Sbjct: 67 LSMDAPELGPGLVERLEQLATCPLC-----GGSFEDPVLLACEHSFCRACLARRWGTPPA 121
Query: 52 SNT 54
+ T
Sbjct: 122 TGT 124
>gi|10863879 solute carrier family 5 (sodium-dependent vitamin
transporter), member 6 [Homo sapiens]
Length = 635
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 15 SLESSSWCPLCPAVGNGSGFSTPTTLTSCTVWGLPGLS 52
S+ +S + P+ NGS FS PT LT TV L L+
Sbjct: 474 SIVTSMGFSMPPSPSNGSSFSLPTNLTVATVTTLMPLT 511
>gi|83035133 coiled-coil domain containing 108 isoform 2 [Homo
sapiens]
Length = 164
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 45 VWGLPGLSNTHLCGWELGSATSLQL-LRDTAIQLRQ 79
+WG+ H GWELG T+ L L++ +++L++
Sbjct: 77 IWGIEVAEELHWKGWELGKETTRNLVLKNRSLKLQK 112
>gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo
sapiens]
Length = 1925
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 45 VWGLPGLSNTHLCGWELGSATSLQL-LRDTAIQLRQ 79
+WG+ H GWELG T+ L L++ +++L++
Sbjct: 142 IWGIEVAEELHWKGWELGKETTRNLVLKNRSLKLQK 177
>gi|223029432 solute carrier family 2 (facilitated glucose
transporter), member 6 isoform 1 [Homo sapiens]
Length = 507
Score = 26.9 bits (58), Expect = 3.5
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 8 LSKGSRESLESSSWCPLCPAVGNGSGFSTPTTLTSCTVWGLPGLSNTHLCGWELGSATSL 67
LS S LES SW L + +G+ T L + ++ + G+ +G
Sbjct: 367 LSPNSTAGLESESWGDLAQPLAAPAGYLTLVPLLATMLF---------IMGYAVGWGPIT 417
Query: 68 QLLRDTAIQLR-QGLTAAPCFLPMAVLLIYTESSHLP 103
LL + LR +G+ + C L + S LP
Sbjct: 418 WLLMSEVLPLRARGVASGLCVLASWLTAFVLTKSFLP 454
>gi|118600975 syntaxin binding protein 3 [Homo sapiens]
Length = 592
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 16 LESSSW--CPLCPAVGNGSG 33
L+S W C CPAV NGSG
Sbjct: 490 LDSKEWPYCSQCPAVWNGSG 509
>gi|22748701 zinc finger protein 641 [Homo sapiens]
Length = 438
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 13 RESLESSSWCPLCPAVGNGSGFSTPTTLTSCTVWGLPGLSNTHLC 57
+E +S+ W P P GN + L + GL + + LC
Sbjct: 73 QEKAQSAPWVPAIPQEGNTGDWEMAAALLAAGSQGLVTIKDVSLC 117
>gi|46195763 metastasis suppressor 1-like [Homo sapiens]
Length = 747
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 10 KGSRESLESSSWCPLCPAVGNGSGFSTPTTLTSCTVWGLPGLSNTHLCGWELGSATS 66
K SR+SL+ SS G+ST TT SC+ +P + + C G A S
Sbjct: 461 KSSRDSLQYSS------------GYSTQTTTPSCSEDTIPSQGSDYDCYSVNGDADS 505
>gi|7657465 podocalyxin-like 2 [Homo sapiens]
Length = 605
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 7 SLSKGSRESLESSSWCPLCPAVGNGSGFSTPTTLTSCTVWGLPGLSNTH 55
+++ G ++S + + PA G G F P + G GLS H
Sbjct: 252 TVTPGDQDSTSQEAEATVLPAAGLGVEFEAPQEASEEATAGAAGLSGQH 300
>gi|239756340 PREDICTED: hypothetical LOC645212, partial [Homo
sapiens]
Length = 119
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 31 GSGFSTPTTLTSCTVWG-----------LPGLSNTHLCGWELGSATSLQLLRDTAIQLRQ 79
GSGF PTT TS V G + +S L W G +L LR +
Sbjct: 6 GSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAY 65
Query: 80 GLTAAPCFLPMAVLLIYTESSHLPS 104
+ C +P+ ++ +P+
Sbjct: 66 PASTGGCAVPLVTVITVHGRLRIPT 90
>gi|239750823 PREDICTED: hypothetical LOC645212 [Homo sapiens]
Length = 149
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 31 GSGFSTPTTLTSCTVWG-----------LPGLSNTHLCGWELGSATSLQLLRDTAIQLRQ 79
GSGF PTT TS V G + +S L W G +L LR +
Sbjct: 36 GSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAY 95
Query: 80 GLTAAPCFLPMAVLLIYTESSHLPS 104
+ C +P+ ++ +P+
Sbjct: 96 PASTGGCAVPLVTVITVHGRLRIPT 120
>gi|239745185 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 31 GSGFSTPTTLTSCTVWG-----------LPGLSNTHLCGWELGSATSLQLLRDTAIQLRQ 79
GSGF PTT TS V G + +S L W G +L LR +
Sbjct: 36 GSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAY 95
Query: 80 GLTAAPCFLPMAVLLIYTESSHLPS 104
+ C +P+ ++ +P+
Sbjct: 96 PASTGGCAVPLVTVITVHGRLRIPT 120
>gi|188528675 slit homolog 1 [Homo sapiens]
Length = 1534
Score = 25.8 bits (55), Expect = 7.8
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 19 SSWCPLCPAVGNGSGFSTPTTLT------------SCTVWGLPGLSNTHLCGWELGSATS 66
S W P +G + S P +L SC+ G G T C GS +
Sbjct: 227 SQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKSEFSCSGQGEAGRVPT--CTLSSGSCPA 284
Query: 67 LQLLRDTAIQLR-QGLTAAPCFLPMAVLLIYTESSHLPSLP 106
+ + + R +GLTA P LP + I E + + S+P
Sbjct: 285 MCTCSNGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIP 325
>gi|38201677 teashirt family zinc finger 1 [Homo sapiens]
Length = 1032
Score = 25.8 bits (55), Expect = 7.8
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 13 RESLESSSWCPLCPAVGNGSGFSTPTTLTSCTVWGLPGLSNTHLCGWELGSATSLQLLRD 72
+ES + P CP G STP+T S + S + G++ A + L+
Sbjct: 106 KESSAPTPTPPTCPVSTTGPTTSTPSTSCSSSTSHSSTTSTSSSSGYDWHQAALAKTLQQ 165
Query: 73 TAIQLRQGLTAAPCFLPMAVLLIYTESSHLPSLPFT 108
T+ GL P + + +Y +++ L FT
Sbjct: 166 TS---SYGLLPEPSL--FSTVQLYRQNNKLYGSVFT 196
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,808,699
Number of Sequences: 37866
Number of extensions: 196045
Number of successful extensions: 554
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 16
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.