Guide to the Human Genome
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Name: LOC728086 Sequence: fasta or formatted (113aa) NCBI GI: 169164173
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          7           2
 C cysteine            4.4          5           1
 D aspartate           0.9          1           1
 E glutamate           3.5          4           1
 F phenylalanine       3.5          4           1
 G glycine             8.0          9           1
 H histidine           1.8          2           1
 I isoleucine          1.8          2           1
 K lysine              0.9          1           1
 L leucine            16.8         19           2
 M methionine          1.8          2           1
 N asparagine          2.7          3           1
 P proline             8.8         10           1
 Q glutamine           3.5          4           1
 R arginine            3.5          4           1
 S serine             15.0         17           3
 T threonine          10.6         12           2
 V valine              2.7          3           1
 W tryptophan          2.7          3           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
RNF39                 0.024   ring finger protein 39 isoform 1 
RNF39                 0.024   ring finger protein 39 isoform 2 
SLC5A6                0.014   solute carrier family 5 (sodium-dependent vitamin tr...
CCDC108               0.014   coiled-coil domain containing 108 isoform 2 
CCDC108               0.014   coiled-coil domain containing 108 isoform 1 
SLC2A6                0.010   solute carrier family 2 (facilitated glucose transp...
STXBP3                0.010   syntaxin binding protein 3 
ZNF641                0.010   zinc finger protein 641 
MTSS1L                0.005   metastasis suppressor 1-like 
PODXL2                0.005   podocalyxin-like 2 
LOC645212             0.005   PREDICTED: hypothetical LOC645212, partial 
LOC645212             0.005   PREDICTED: hypothetical LOC645212 
LOC645212             0.005   PREDICTED: hypothetical protein 
SLIT1                 0.005   slit homolog 1 
TSHZ1                 0.005   teashirt family zinc finger 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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