Guide to the Human Genome
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Name: CCDC108 Sequence: fasta or formatted (164aa) NCBI GI: 83035133
Description:

coiled-coil domain containing 108 isoform 2

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt prot [1925aa] coiled-coil domain containing 108 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         12           2
 C cysteine            3.0          5           1
 D aspartate           1.2          2           1
 E glutamate           5.5          9           2
 F phenylalanine       0.6          1           1
 G glycine             3.7          6           2
 H histidine           3.0          5           1
 I isoleucine          3.7          6           1
 K lysine             11.0         18           2
 L leucine             7.3         12           1
 M methionine          3.7          6           2
 N asparagine          4.9          8           1
 P proline             3.7          6           1
 Q glutamine           6.7         11           1
 R arginine            6.1         10           1
 S serine             12.2         20           2
 T threonine           6.1         10           2
 V valine              5.5          9           2
 W tryptophan          1.8          3           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 108 isoform 2 
CCDC108               0.672   coiled-coil domain containing 108 isoform 1 
LOC100290283          0.019   PREDICTED: hypothetical protein XP_002347961 
ZNF136                0.019   zinc finger protein 136 
NEB                   0.013   nebulin 
ENOX1                 0.013   ecto-NOX disulfide-thiol exchanger 1 
ENOX1                 0.013   ecto-NOX disulfide-thiol exchanger 1 
LOC643446             0.010   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.010   PREDICTED: similar to ribonucleic acid binding prot...
LOC728086             0.010   PREDICTED: hypothetical protein 
RNPS1                 0.010   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.010   RNA-binding protein S1, serine-rich domain 
LOC643446             0.010   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.010   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.010   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.010   PREDICTED: similar to ribonucleic acid binding prote...
MUC21                 0.010   mucin 21 
CCDC39                0.010   coiled-coil domain containing 39 
ZNF608                0.006   zinc finger protein 608 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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