Guide to the Human Genome
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Search of human proteins with 169163921

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169163921 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
         (127 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169163921 PREDICTED: hypothetical protein isoform 1 [Homo sap...   263   2e-71
gi|88954747 PREDICTED: hypothetical protein isoform 7 [Homo sapi...   263   2e-71
gi|41190403 PREDICTED: hypothetical protein isoform 1 [Homo sapi...   263   2e-71
gi|239753152 PREDICTED: hypothetical protein isoform 2 [Homo sap...    82   1e-16
gi|239747721 PREDICTED: hypothetical protein [Homo sapiens]            82   1e-16
gi|239741587 PREDICTED: hypothetical protein [Homo sapiens]            82   1e-16
gi|40255101 solute carrier family 39 (zinc transporter), member ...    34   0.027
gi|190014617 solute carrier family 39 (zinc transporter), member...    34   0.027
gi|239755001 PREDICTED: hypothetical protein [Homo sapiens]            30   0.65 
gi|239749563 PREDICTED: hypothetical protein XP_002347087 [Homo ...    30   0.65 
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s...    28   2.5  
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s...    28   2.5  
gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens]         27   4.2  
gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens]         27   4.2  
gi|197245440 hypothetical protein LOC23285 [Homo sapiens]              27   4.2  
gi|11342676 thyroid hormone receptor interactor 10 [Homo sapiens]      27   4.2  
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ...    27   5.5  
gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo ...    27   5.5  
gi|157909822 pragmin [Homo sapiens]                                    27   5.5  
gi|239756568 PREDICTED: similar to BCL2-associated transcription...    26   7.2  
gi|169218320 PREDICTED: similar to BCL2-associated transcription...    26   7.2  
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        26   9.4  
gi|21361796 ELL associated factor 2 [Homo sapiens]                     26   9.4  

>gi|169163921 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 127

 Score =  263 bits (673), Expect = 2e-71
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60
           MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA
Sbjct: 1   MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60

Query: 61  LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
           LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 61  LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120

Query: 121 FSSSSED 127
           FSSSSED
Sbjct: 121 FSSSSED 127


>gi|88954747 PREDICTED: hypothetical protein isoform 7 [Homo
           sapiens]
          Length = 127

 Score =  263 bits (673), Expect = 2e-71
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60
           MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA
Sbjct: 1   MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60

Query: 61  LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
           LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 61  LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120

Query: 121 FSSSSED 127
           FSSSSED
Sbjct: 121 FSSSSED 127


>gi|41190403 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 127

 Score =  263 bits (673), Expect = 2e-71
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60
           MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA
Sbjct: 1   MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQPSSFLYQEDWRLQPWLCGASLA 60

Query: 61  LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
           LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 61  LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120

Query: 121 FSSSSED 127
           FSSSSED
Sbjct: 121 FSSSSED 127


>gi|239753152 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 65

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 2/67 (2%)

Query: 61  LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
           +S+ C T+L ++V+   R   Q+    R V+GNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 1   MSAQC-TFLPLKVQEE-RGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQD 58

Query: 121 FSSSSED 127
           FSSSSED
Sbjct: 59  FSSSSED 65



 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 32/38 (84%), Positives = 33/38 (86%), Gaps = 3/38 (7%)

Query: 1  MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQ 38
          MSAQCTFLPLKVQEERGNPQVELTMRTVT   G S N+
Sbjct: 1  MSAQCTFLPLKVQEERGNPQVELTMRTVT---GNSLNK 35


>gi|239747721 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 65

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 2/67 (2%)

Query: 61  LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
           +S+ C T+L ++V+   R   Q+    R V+GNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 1   MSAQC-TFLPLKVQEE-RGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQD 58

Query: 121 FSSSSED 127
           FSSSSED
Sbjct: 59  FSSSSED 65



 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 32/38 (84%), Positives = 33/38 (86%), Gaps = 3/38 (7%)

Query: 1  MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQ 38
          MSAQCTFLPLKVQEERGNPQVELTMRTVT   G S N+
Sbjct: 1  MSAQCTFLPLKVQEERGNPQVELTMRTVT---GNSLNK 35


>gi|239741587 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 65

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 2/67 (2%)

Query: 61  LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
           +S+ C T+L ++V+   R   Q+    R V+GNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 1   MSAQC-TFLPLKVQEE-RGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQD 58

Query: 121 FSSSSED 127
           FSSSSED
Sbjct: 59  FSSSSED 65



 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 32/38 (84%), Positives = 33/38 (86%), Gaps = 3/38 (7%)

Query: 1  MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQ 38
          MSAQCTFLPLKVQEERGNPQVELTMRTVT   G S N+
Sbjct: 1  MSAQCTFLPLKVQEERGNPQVELTMRTVT---GNSLNK 35


>gi|40255101 solute carrier family 39 (zinc transporter), member 13
           isoform b [Homo sapiens]
          Length = 364

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 6   TFLPLKVQEERGNPQVELTMR-TVTALRGKSRNQPSSFLYQEDWRLQPWLC--------G 56
           T L L++    G  Q  L  R T TA R  ++   S        RL  W+C        G
Sbjct: 20  TALALELLGRAGGSQPALRSRGTATACRLDNKESESWGALLSGERLDTWICSLLGSLMVG 79

Query: 57  AS-----LALSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPD---HACSSSP 108
            S     L +  +  T L+    G+WR K  L      + GN      P+   + CS+SP
Sbjct: 80  LSGVFPLLVIPLEMGTMLRSEA-GAWRLKQLLSFALGGLLGNVFLHLLPEAWAYTCSASP 138

Query: 109 GATSTSLSMEQ 119
           G    SL  +Q
Sbjct: 139 GGEGQSLQQQQ 149


>gi|190014617 solute carrier family 39 (zinc transporter), member 13
           isoform a [Homo sapiens]
          Length = 371

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 6   TFLPLKVQEERGNPQVELTMR-TVTALRGKSRNQPSSFLYQEDWRLQPWLC--------G 56
           T L L++    G  Q  L  R T TA R  ++   S        RL  W+C        G
Sbjct: 20  TALALELLGRAGGSQPALRSRGTATACRLDNKESESWGALLSGERLDTWICSLLGSLMVG 79

Query: 57  AS-----LALSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPD---HACSSSP 108
            S     L +  +  T L+    G+WR K  L      + GN      P+   + CS+SP
Sbjct: 80  LSGVFPLLVIPLEMGTMLRSEA-GAWRLKQLLSFALGGLLGNVFLHLLPEAWAYTCSASP 138

Query: 109 GATSTSLSMEQ 119
           G    SL  +Q
Sbjct: 139 GGEGQSLQQQQ 149


>gi|239755001 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 261

 Score = 29.6 bits (65), Expect = 0.65
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 28  VTALRGKSRNQPSSFLYQEDWRLQPWLCGASLALSSDCPTWLQVRVRGSWRWKMQLGELT 87
           + + RG  R + +   +   W L P+LC  ++ +S  C   +Q+  RG W W +  G L+
Sbjct: 189 IGSARGLPRPEATPIAHPSHWALTPYLC-KTVQISVKC---VQLAWRG-WPWGLPQGTLS 243

Query: 88  RQVSGNSLN 96
             + G  ++
Sbjct: 244 PWIWGGPVS 252


>gi|239749563 PREDICTED: hypothetical protein XP_002347087 [Homo
           sapiens]
          Length = 261

 Score = 29.6 bits (65), Expect = 0.65
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 28  VTALRGKSRNQPSSFLYQEDWRLQPWLCGASLALSSDCPTWLQVRVRGSWRWKMQLGELT 87
           + + RG  R + +   +   W L P+LC  ++ +S  C   +Q+  RG W W +  G L+
Sbjct: 189 IGSARGLPRPEATPIAHPSHWALTPYLC-KTVQISVKC---VQLAWRG-WPWGLPQGTLS 243

Query: 88  RQVSGNSLN 96
             + G  ++
Sbjct: 244 PWIWGGPVS 252


>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
           sapiens]
          Length = 634

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 87  TRQVSGNSLNKRTPDHACSSSPGATSTS 114
           TR+ +G+S +K+T     S+SP  +STS
Sbjct: 217 TREAAGSSHSKKTTGSKASASPSTSSTS 244


>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
           sapiens]
          Length = 645

 Score = 27.7 bits (60), Expect = 2.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 87  TRQVSGNSLNKRTPDHACSSSPGATSTS 114
           TR+ +G+S +K+T     S+SP  +STS
Sbjct: 228 TREAAGSSHSKKTTGSKASASPSTSSTS 255


>gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens]
          Length = 409

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 78  RWKMQLGELTRQVSGNSLNKRTP----DHACSSSPGATSTSLSMEQDFSSSSE 126
           RW        R+  G    K TP    D+  +SS  A +T +S  +DFSSSS+
Sbjct: 344 RWYFNQDSACRESGGAP--KNTPLSEDDNPGASSAPAQATFISPSEDFSSSSQ 394


>gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens]
          Length = 410

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 78  RWKMQLGELTRQVSGNSLNKRTP----DHACSSSPGATSTSLSMEQDFSSSSE 126
           RW        R+  G    K TP    D+  +SS  A +T +S  +DFSSSS+
Sbjct: 345 RWYFNQDSACRESGGAP--KNTPLSEDDNPGASSAPAQATFISPSEDFSSSSQ 395


>gi|197245440 hypothetical protein LOC23285 [Homo sapiens]
          Length = 1354

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 78  RWKMQLGELTRQVSGNSLNKRT-PDHACSSSPGATSTSLSMEQDFSSSSE 126
           R K+  G L  Q     L K T  D  C S  G +S S     +FS S+E
Sbjct: 254 RPKVLTGNLNVQAKAKPLKKATGKDSPCLSIAGPSSRSTDSSMEFSISTE 303


>gi|11342676 thyroid hormone receptor interactor 10 [Homo sapiens]
          Length = 545

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 69  LQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSED 127
           L+V+   +W  + +   L+ +    S + R PD   S+ P ++S S S  QD   SSE+
Sbjct: 403 LEVQKYEAWLAEAESRVLSNRGDSLSRHARPPDPPASAPPDSSSNSAS--QDTKESSEE 459


>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
           sapiens]
          Length = 284

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 15  ERGNPQVELTMRTVTALRGKSRNQ 38
           ERG P+ +   R ++ALRG+ R +
Sbjct: 196 ERGGPRAQAVRRRLSALRGRGRRR 219


>gi|239748639 PREDICTED: hypothetical protein XP_002346752 [Homo
           sapiens]
          Length = 286

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 15  ERGNPQVELTMRTVTALRGKSRNQ 38
           ERG P+ +   R ++ALRG+ R +
Sbjct: 198 ERGGPRAQAVRRRLSALRGRGRRR 221


>gi|157909822 pragmin [Homo sapiens]
          Length = 1402

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 69  LQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQDFSSSS 125
           L+   +GS  W    G     ++GN     +P   C  +P A+S+ LS+    S+ S
Sbjct: 880 LEKAFKGSGHWLPAAG-----LAGNRGGCGSPGLQCKGAPSASSSQLSVSSQASTGS 931


>gi|239756568 PREDICTED: similar to BCL2-associated transcription
           factor 1 [Homo sapiens]
          Length = 869

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 93  NSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSE 126
           +S +KR  DH+ SSS  A+ +S S  ++  S  E
Sbjct: 737 DSKHKREQDHSLSSSSSASPSSPSSREEKESKKE 770


>gi|169218320 PREDICTED: similar to BCL2-associated transcription
           factor 1 isoform 2 [Homo sapiens]
          Length = 869

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 93  NSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSE 126
           +S +KR  DH+ SSS  A+ +S S  ++  S  E
Sbjct: 737 DSKHKREQDHSLSSSSSASPSSPSSREEKESKKE 770


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 40   SSFLYQEDWRLQPWLCGASLALSSDCPTWLQVRVRGSWRWKMQLGELTR-QVSGNSLNKR 98
            S+ L +E    Q W   +    S    T + V V  ++  +      T    S  +L + 
Sbjct: 4213 STGLQEESTTFQSWPSSSDTTPSPPSTTAVPVEVSTTYHSRPSSTPTTHFSASSTTLGRS 4272

Query: 99   TPDHACSSSPGATSTSL 115
                   SSPGAT T+L
Sbjct: 4273 EESTTVHSSPGATGTAL 4289


>gi|21361796 ELL associated factor 2 [Homo sapiens]
          Length = 260

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 103 ACSSSPGATSTSLSMEQDFSSSSED 127
           +C SS  + S+S S  +D SS SED
Sbjct: 175 SCDSSSDSKSSSSSSSEDSSSDSED 199


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.125    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,014,417
Number of Sequences: 37866
Number of extensions: 187352
Number of successful extensions: 702
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 34
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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