Guide to the Human Genome
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Name: LOC388948 Sequence: fasta or formatted (127aa) NCBI GI: 169163921
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {65aa} PREDICTED: hypothetical protein
alt prot {65aa} PREDICTED: hypothetical protein
alt prot {65aa} PREDICTED: hypothetical protein isoform 2
alt mRNA {127aa} PREDICTED: hypothetical protein isoform 1
alt mRNA {127aa} PREDICTED: hypothetical protein isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          6           1
 C cysteine            3.1          4           1
 D aspartate           3.9          5           1
 E glutamate           5.5          7           2
 F phenylalanine       2.4          3           1
 G glycine             5.5          7           1
 H histidine           0.8          1           1
 I isoleucine          0.0          0           0
 K lysine              3.1          4           1
 L leucine            11.0         14           1
 M methionine          3.1          4           1
 N asparagine          3.1          4           1
 P proline             5.5          7           1
 Q glutamine           7.9         10           1
 R arginine            7.9         10           1
 S serine             15.7         20           4
 T threonine           7.1          9           1
 V valine              4.7          6           1
 W tryptophan          3.9          5           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC388948             1.000   PREDICTED: hypothetical protein isoform 7 
LOC388948             1.000   PREDICTED: hypothetical protein isoform 1 
LOC388948             0.239   PREDICTED: hypothetical protein isoform 2 
LOC388948             0.239   PREDICTED: hypothetical protein 
LOC388948             0.239   PREDICTED: hypothetical protein 
SLC39A13              0.038   solute carrier family 39 (zinc transporter), member ...
SLC39A13              0.038   solute carrier family 39 (zinc transporter), member...
LOC100293209          0.021   PREDICTED: hypothetical protein 
LOC100289847          0.021   PREDICTED: hypothetical protein XP_002347087 
PHACTR2               0.013   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.013   phosphatase and actin regulator 2 isoform 1 
HAUS8                 0.008   sarcoma antigen NY-SAR-48 isoform b 
HAUS8                 0.008   sarcoma antigen NY-SAR-48 isoform a 
KIAA1107              0.008   hypothetical protein LOC23285 
TRIP10                0.008   thyroid hormone receptor interactor 10 
LOC100292082          0.008   PREDICTED: hypothetical protein XP_002345881 
LOC100290709          0.008   PREDICTED: hypothetical protein XP_002346752 
PRAGMIN               0.008   pragmin 
LOC731605             0.004   PREDICTED: similar to BCL2-associated transcription...
LOC731605             0.004   PREDICTED: similar to BCL2-associated transcription...
MUC12                 0.004   PREDICTED: mucin 12 
EAF2                  0.004   ELL associated factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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