Search of human proteins with 16915936

Search of human proteins with 16915936

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|16915936 alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase B isoform 2 [Homo sapiens]
         (563 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16915936 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluco...  1143   0.0  
gi|7710152 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucos...  1045   0.0  
gi|6912502 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucos...   623   e-178
gi|237512959 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluc...   540   e-153
gi|166197698 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluc...   211   1e-54
gi|239752981 PREDICTED: similar to hCG1811644 [Homo sapiens]           70   7e-12
gi|239747558 PREDICTED: similar to hCG1811644 [Homo sapiens]           70   7e-12
gi|239741432 PREDICTED: similar to hCG1811644 [Homo sapiens]           70   7e-12
gi|194328806 nuclear receptor subfamily 1, group H, member 3 iso...    33   0.91 
gi|121114302 cullin 4B isoform 2 [Homo sapiens]                        32   2.0  
gi|121114298 cullin 4B isoform 1 [Homo sapiens]                        32   2.0  
gi|207113124 dynein, cytoplasmic 1, intermediate chain 1 isoform...    31   3.5  
gi|21361127 potassium inwardly-rectifying channel J15 [Homo sapi...    30   5.9  
gi|25777640 potassium inwardly-rectifying channel J15 [Homo sapi...    30   5.9  
gi|25777638 potassium inwardly-rectifying channel J15 [Homo sapi...    30   5.9  
gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]      30   7.7  
gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]      30   7.7  
gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]      30   7.7  
gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]      30   7.7  
gi|209915591 ribosomal protein S6 kinase, 52kDa, polypeptide 1 i...    30   7.7  
gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1 is...    30   7.7  

>gi|16915936 alpha-1,3-mannosyl-glycoprotein
           4-beta-N-acetylglucosaminyltransferase B isoform 2 [Homo
           sapiens]
          Length = 563

 Score = 1143 bits (2957), Expect = 0.0
 Identities = 563/563 (100%), Positives = 563/563 (100%)

Query: 1   MSRVAGTRTDVNELLQRWTPRCVRWHTGGARRVALDRPLVTACLPPAGDVVDVYQREFLA 60
           MSRVAGTRTDVNELLQRWTPRCVRWHTGGARRVALDRPLVTACLPPAGDVVDVYQREFLA
Sbjct: 1   MSRVAGTRTDVNELLQRWTPRCVRWHTGGARRVALDRPLVTACLPPAGDVVDVYQREFLA 60

Query: 61  LRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRDGDGNRTWGRLTEDPRLKPWNGS 120
           LRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRDGDGNRTWGRLTEDPRLKPWNGS
Sbjct: 61  LRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRDGDGNRTWGRLTEDPRLKPWNGS 120

Query: 121 HRHVLHLPTVFHHLPHLLAKESSLQPAVRVGQGRTGVSVVMGIPSVRREVHSYLTDTLHS 180
           HRHVLHLPTVFHHLPHLLAKESSLQPAVRVGQGRTGVSVVMGIPSVRREVHSYLTDTLHS
Sbjct: 121 HRHVLHLPTVFHHLPHLLAKESSLQPAVRVGQGRTGVSVVMGIPSVRREVHSYLTDTLHS 180

Query: 181 LISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEVISPSPHFYPDF 240
           LISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEVISPSPHFYPDF
Sbjct: 181 LISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEVISPSPHFYPDF 240

Query: 241 SRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFAL 300
           SRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFAL
Sbjct: 241 SRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFAL 300

Query: 301 QQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLLDHILWVKVCNPEK 360
           QQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLLDHILWVKVCNPEK
Sbjct: 301 QQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLLDHILWVKVCNPEK 360

Query: 361 DAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKQALRKEHVNPPAEVST 420
           DAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKQALRKEHVNPPAEVST
Sbjct: 361 DAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKQALRKEHVNPPAEVST 420

Query: 421 SLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFFQPLRLERFFFRSGNIEHPEDKLFN 480
           SLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFFQPLRLERFFFRSGNIEHPEDKLFN
Sbjct: 421 SLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFFQPLRLERFFFRSGNIEHPEDKLFN 480

Query: 481 TSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQIGSFYKGVAEGEVDPAFGPLEAL 540
           TSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQIGSFYKGVAEGEVDPAFGPLEAL
Sbjct: 481 TSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQIGSFYKGVAEGEVDPAFGPLEAL 540

Query: 541 RLSIQTDSPVWVILSEIFLKKAD 563
           RLSIQTDSPVWVILSEIFLKKAD
Sbjct: 541 RLSIQTDSPVWVILSEIFLKKAD 563


>gi|7710152 alpha-1,3-mannosyl-glycoprotein
           4-beta-N-acetylglucosaminyltransferase B isoform 1 [Homo
           sapiens]
          Length = 548

 Score = 1045 bits (2701), Expect = 0.0
 Identities = 516/516 (100%), Positives = 516/516 (100%)

Query: 48  GDVVDVYQREFLALRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRDGDGNRTWGR 107
           GDVVDVYQREFLALRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRDGDGNRTWGR
Sbjct: 33  GDVVDVYQREFLALRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRDGDGNRTWGR 92

Query: 108 LTEDPRLKPWNGSHRHVLHLPTVFHHLPHLLAKESSLQPAVRVGQGRTGVSVVMGIPSVR 167
           LTEDPRLKPWNGSHRHVLHLPTVFHHLPHLLAKESSLQPAVRVGQGRTGVSVVMGIPSVR
Sbjct: 93  LTEDPRLKPWNGSHRHVLHLPTVFHHLPHLLAKESSLQPAVRVGQGRTGVSVVMGIPSVR 152

Query: 168 REVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLL 227
           REVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLL
Sbjct: 153 REVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLL 212

Query: 228 EVISPSPHFYPDFSRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVA 287
           EVISPSPHFYPDFSRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVA
Sbjct: 213 EVISPSPHFYPDFSRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVA 272

Query: 288 KPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLL 347
           KPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLL
Sbjct: 273 KPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLL 332

Query: 348 DHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKQAL 407
           DHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKQAL
Sbjct: 333 DHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKQAL 392

Query: 408 RKEHVNPPAEVSTSLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFFQPLRLERFFFR 467
           RKEHVNPPAEVSTSLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFFQPLRLERFFFR
Sbjct: 393 RKEHVNPPAEVSTSLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFFQPLRLERFFFR 452

Query: 468 SGNIEHPEDKLFNTSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQIGSFYKGVAE 527
           SGNIEHPEDKLFNTSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQIGSFYKGVAE
Sbjct: 453 SGNIEHPEDKLFNTSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQIGSFYKGVAE 512

Query: 528 GEVDPAFGPLEALRLSIQTDSPVWVILSEIFLKKAD 563
           GEVDPAFGPLEALRLSIQTDSPVWVILSEIFLKKAD
Sbjct: 513 GEVDPAFGPLEALRLSIQTDSPVWVILSEIFLKKAD 548


>gi|6912502 alpha-1,3-mannosyl-glycoprotein
           4-beta-N-acetylglucosaminyltransferase A isoform 1 [Homo
           sapiens]
          Length = 535

 Score =  623 bits (1607), Expect = e-178
 Identities = 315/509 (61%), Positives = 377/509 (74%), Gaps = 12/509 (2%)

Query: 54  YQREFLALRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRDGDGNRTWGRLTEDPR 113
           YQREFLAL++RL  AE    +RS ELN ++ + KR  +E    +D     +   L     
Sbjct: 37  YQREFLALKERLRIAEHRISQRSSELNTIVQQFKRVGAETNGSKDALNKFSDNTLKLLKE 96

Query: 114 LKPWNGSHRHVLHLPTVFHHLPHLLAKESSLQPAVRVGQGRTGVSVVMGIPSVRREVHSY 173
           L     + +  L +P++++HLPHLL  E SLQPAV++G GRTGVS+VMGIP+V+REV SY
Sbjct: 97  L-----TSKKSLQVPSIYYHLPHLLKNEGSLQPAVQIGNGRTGVSIVMGIPTVKREVKSY 151

Query: 174 LTDTLHSLISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEVISPS 233
           L +TLHSLI  L P+EK D VIVV I ETD  Y   V  N++  F  EI SGL+EVISP 
Sbjct: 152 LIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEKEFSKEISSGLVEVISPP 211

Query: 234 PHFYPDFSRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLS 293
             +YPD + L+E+FGD KERVRWRTKQNLDYCFLMMYAQ KGIYY+QLEDDI+ K NY +
Sbjct: 212 ESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFN 271

Query: 294 TMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFYRDKPIDWLLDHILWV 353
           T+KNFALQ  SE+WMILEFSQLGFIGKMF++ DL+LIVEFI MFY++KPIDWLLDHILWV
Sbjct: 272 TIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWV 331

Query: 354 KVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKDKDFGKQALRKEHVN 413
           KVCNPEKDAKHCDRQKANLRIRF+PSLFQHVG HSSL+GKIQKL DKD+ K  L K HVN
Sbjct: 332 KVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQKLTDKDYMKPLLLKIHVN 391

Query: 414 PPAEVSTSLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFFQPLRLERFFFRSGNIEH 473
           PPAEVSTSLK YQ  TLEK Y+ EDFFWA TP AGD+I F+F +P+ +E + F SGN EH
Sbjct: 392 PPAEVSTSLKVYQGHTLEKTYMGEDFFWAITPIAGDYILFKFDKPVNVESYLFHSGNQEH 451

Query: 474 PEDKLFNTSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQIGSFYKGVAEGEVDPA 533
           P D L NT+VEVLPF +     E L+  +    +  R  DGY +IG F  GVAEG VDP+
Sbjct: 452 PGDILLNTTVEVLPFKS-----EGLEISKET--KDKRLEDGYFRIGKFENGVAEGMVDPS 504

Query: 534 FGPLEALRLSIQTDSPVWVILSEIFLKKA 562
             P+ A RLS+  +S VW IL+EI +KKA
Sbjct: 505 LNPISAFRLSVIQNSAVWAILNEIHIKKA 533


>gi|237512959 alpha-1,3-mannosyl-glycoprotein
           4-beta-N-acetylglucosaminyltransferase A isoform 2 [Homo
           sapiens]
          Length = 423

 Score =  540 bits (1392), Expect = e-153
 Identities = 268/400 (67%), Positives = 311/400 (77%), Gaps = 7/400 (1%)

Query: 157 VSVVMGIPSVRREVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKA 216
           VS+VMGIP+V+REV SYL +TLHSLI  L P+EK D VIVV I ETD  Y   V  N++ 
Sbjct: 7   VSIVMGIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEK 66

Query: 217 LFPTEIHSGLLEVISPSPHFYPDFSRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGI 276
            F  EI SGL+EVISP   +YPD + L+E+FGD KERVRWRTKQNLDYCFLMMYAQ KGI
Sbjct: 67  EFSKEISSGLVEVISPPESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGI 126

Query: 277 YYVQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILM 336
           YY+QLEDDI+ K NY +T+KNFALQ  SE+WMILEFSQLGFIGKMF++ DL+LIVEFI M
Sbjct: 127 YYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDLTLIVEFIFM 186

Query: 337 FYRDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQK 396
           FY++KPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRF+PSLFQHVG HSSL+GKIQK
Sbjct: 187 FYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQK 246

Query: 397 LKDKDFGKQALRKEHVNPPAEVSTSLKTYQHFTLEKAYLREDFFWAFTPAAGDFIRFRFF 456
           L DKD+ K  L K HVNPPAEVSTSLK YQ  TLEK Y+ EDFFWA TP AGD+I F+F 
Sbjct: 247 LTDKDYMKPLLLKIHVNPPAEVSTSLKVYQGHTLEKTYMGEDFFWAITPIAGDYILFKFD 306

Query: 457 QPLRLERFFFRSGNIEHPEDKLFNTSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYL 516
           +P+ +E + F SGN EHP D L NT+VEVLPF +     E L+  +    +  R  DGY 
Sbjct: 307 KPVNVESYLFHSGNQEHPGDILLNTTVEVLPFKS-----EGLEISKET--KDKRLEDGYF 359

Query: 517 QIGSFYKGVAEGEVDPAFGPLEALRLSIQTDSPVWVILSE 556
           +IG F  GVAEG VDP+  P+ A RLS+  +S VW IL+E
Sbjct: 360 RIGKFENGVAEGMVDPSLNPISAFRLSVIQNSAVWAILNE 399


>gi|166197698 alpha-1,3-mannosyl-glycoprotein
           4-beta-N-acetylglucosaminyltransferase C [Homo sapiens]
          Length = 478

 Score =  211 bits (537), Expect = 1e-54
 Identities = 125/402 (31%), Positives = 212/402 (52%), Gaps = 32/402 (7%)

Query: 159 VVMGIPSVRREVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETDSQYTSAVTENIKALF 218
           + +G+ SV+R+  +YL +T+ S+  + S +E ++  +VV +A+ +S +  A+ ++I   F
Sbjct: 101 LTIGLSSVKRKKGNYLLETIKSIFEQSSYEELKEISVVVHLADFNSSWRDAMVQDITQKF 160

Query: 219 PTEIHSGLLEVISPSPHFYPDFSRLRESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYY 278
              I +G L VI     +YP    L+ ++ DP++RV++R+KQN+DY FL+ +  +   YY
Sbjct: 161 AHHIIAGRLMVIHAPEEYYPILDGLKRNYNDPEDRVKFRSKQNVDYAFLLNFCANTSDYY 220

Query: 279 VQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDLSLIVEFILMFY 338
           V LEDD+    N+L+ +K          W+ LEFS+LG+IGK++ S DL  +  F+LMFY
Sbjct: 221 VMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLMFY 280

Query: 339 RDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLK 398
           ++ P DWLL H   +     +K+            IRFKPSLFQH+G +SS  G   KLK
Sbjct: 281 QEMPCDWLLTHFRGLLA---QKNV-----------IRFKPSLFQHMGYYSSYKGTENKLK 326

Query: 399 DKDFGKQALRKEHVNPPAEVSTSLKTYQHFTLEKAYLR-EDFFWAFTPAAGDFIRFRFFQ 457
           D DF +++      NPPA + T++  ++++   KAY   +++FW   P+ GD     F  
Sbjct: 327 DDDFEEESFDIPD-NPPASLYTNMNVFENYEASKAYSSVDEYFWGKPPSTGDVFVIVFEN 385

Query: 458 PLRLERFFFRSGNIEHPEDKLFNTSVEVLPFDNPQSDKEALQEGRTATLRYPRSPDGYLQ 517
           P+ +++    +G  +   D L + +++V   +N    K+             R    YL+
Sbjct: 386 PIIIKKIKVNTGTEDRQNDILHHGALDV--GENVMPSKQR------------RQCSTYLR 431

Query: 518 IGSFYKGVAE--GEVDPAFGPLEALRLSIQTDSPVWVILSEI 557
           +G F  G  E  G        +  +R+ +      W+I+  I
Sbjct: 432 LGEFKNGNFEMSGVNQKIPFDIHCMRIYVTKTQKEWLIIRSI 473


>gi|239752981 PREDICTED: similar to hCG1811644 [Homo sapiens]
          Length = 245

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 27/212 (12%)

Query: 268 MMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDL 327
           M +A +   Y++ LED I   P + + + +         W+ILEFS L   GK+F + D 
Sbjct: 1   MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60

Query: 328 SLIVEFILMFYRDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTH 387
           S +  F L+F++D P   LL     +                 N+ I F PS+F H G +
Sbjct: 61  SRLNTFFLLFHKDTPTHLLLSEFRLLLA--------------QNIPIHFSPSVFHHTGNY 106

Query: 388 SSLAGKIQKL-KDKDFGKQALRKEHVNPPAEVSTSLKTYQHFTLEKAY-LREDFFWAFTP 445
           S        + KD+ FG      E  NP A V T + +     L+  Y L ++ +    P
Sbjct: 107 SVFDDMCFSVEKDRVFG------EPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNP 160

Query: 446 AAGDFIRFRFFQP-----LRLERFFFRSGNIE 472
             G+++     +P     + + R+  + G +E
Sbjct: 161 LKGNYLTVILDRPQKNTQIAVGRYRLQQGQVE 192


>gi|239747558 PREDICTED: similar to hCG1811644 [Homo sapiens]
          Length = 245

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 27/212 (12%)

Query: 268 MMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDL 327
           M +A +   Y++ LED I   P + + + +         W+ILEFS L   GK+F + D 
Sbjct: 1   MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60

Query: 328 SLIVEFILMFYRDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTH 387
           S +  F L+F++D P   LL     +                 N+ I F PS+F H G +
Sbjct: 61  SRLNTFFLLFHKDTPTHLLLSEFRLLLA--------------QNIPIHFSPSVFHHTGNY 106

Query: 388 SSLAGKIQKL-KDKDFGKQALRKEHVNPPAEVSTSLKTYQHFTLEKAY-LREDFFWAFTP 445
           S        + KD+ FG      E  NP A V T + +     L+  Y L ++ +    P
Sbjct: 107 SVFDDMCFSVEKDRVFG------EPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNP 160

Query: 446 AAGDFIRFRFFQP-----LRLERFFFRSGNIE 472
             G+++     +P     + + R+  + G +E
Sbjct: 161 LKGNYLTVILDRPQKNTQIAVGRYRLQQGQVE 192


>gi|239741432 PREDICTED: similar to hCG1811644 [Homo sapiens]
          Length = 245

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 27/212 (12%)

Query: 268 MMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDL 327
           M +A +   Y++ LED I   P + + + +         W+ILEFS L   GK+F + D 
Sbjct: 1   MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60

Query: 328 SLIVEFILMFYRDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTH 387
           S +  F L+F++D P   LL     +                 N+ I F PS+F H G +
Sbjct: 61  SRLNTFFLLFHKDTPTHLLLSEFRLLLA--------------QNIPIHFSPSVFHHTGNY 106

Query: 388 SSLAGKIQKL-KDKDFGKQALRKEHVNPPAEVSTSLKTYQHFTLEKAY-LREDFFWAFTP 445
           S        + KD+ FG      E  NP A V T + +     L+  Y L ++ +    P
Sbjct: 107 SVFDDMCFSVEKDRVFG------EPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNP 160

Query: 446 AAGDFIRFRFFQP-----LRLERFFFRSGNIE 472
             G+++     +P     + + R+  + G +E
Sbjct: 161 LKGNYLTVILDRPQKNTQIAVGRYRLQQGQVE 192


>gi|194328806 nuclear receptor subfamily 1, group H, member 3
           isoform b [Homo sapiens]
          Length = 387

 Score = 32.7 bits (73), Expect = 0.91
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 363 KHCDRQKANLRIRFKPSLFQHVGTHSSLAGKIQKLKD-----KDFGKQALRKEHVNPPAE 417
           + C+R+  + R+R    L +    ++  +  I  LKD     +DF K  L+ E +NP  E
Sbjct: 222 QQCNRRSFSDRLRVTVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFE 281

Query: 418 VSTSLKTYQHFTLEKAYL-REDFFWAFTPAAGDFIRFRFFQPLRLERFFFRSGNIEHPED 476
            S ++   Q    E A L     F A  P   D ++    Q   +E       +I HP D
Sbjct: 282 FSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEA-LHAYVSIHHPHD 340

Query: 477 KL 478
           +L
Sbjct: 341 RL 342


>gi|121114302 cullin 4B isoform 2 [Homo sapiens]
          Length = 895

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 34  ALDRPLVTACLPPAGDVV---DVYQREFLALRDRLHAAEQESLKRSKELNLVLDEIKRAV 90
           A+DR L+ + L    D+    D +++ FL   +RL+AAE + L + +E+   L  + + +
Sbjct: 344 AIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRL 403

Query: 91  SE 92
            E
Sbjct: 404 EE 405


>gi|121114298 cullin 4B isoform 1 [Homo sapiens]
          Length = 913

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 34  ALDRPLVTACLPPAGDVV---DVYQREFLALRDRLHAAEQESLKRSKELNLVLDEIKRAV 90
           A+DR L+ + L    D+    D +++ FL   +RL+AAE + L + +E+   L  + + +
Sbjct: 362 AIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRL 421

Query: 91  SE 92
            E
Sbjct: 422 EE 423


>gi|207113124 dynein, cytoplasmic 1, intermediate chain 1 isoform c
           [Homo sapiens]
          Length = 608

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 144 LQPAVRVGQGRTGVSVVMGIPSVRREVHSYLTDTLHSLISELSPQEKEDSVIVVLIAETD 203
           L P  R    + GVS V  +  + REV SY  +T   L +  S +++ED  +V      D
Sbjct: 100 LGPLTRRRLHKLGVSKVTQVDFLPREVVSYSKETQTPLATHQSEEDEEDEEMVESKVGQD 159

Query: 204 SQYTSA-VTENIKALFPTEIHSGLLEVISPSPHFYPDFSR 242
           S+  +    + +K   P E+     + I  S  F   F R
Sbjct: 160 SELENQDKKQEVKEAPPRELTEEEKQQILHSEEFLIFFDR 199


>gi|21361127 potassium inwardly-rectifying channel J15 [Homo
           sapiens]
          Length = 375

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%)

Query: 180 SLISELSPQ---EKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEV----ISP 232
           S + +L+PQ   EKE  ++V+L A  +S  TSAV ++  +  P EI+ G   V    +S 
Sbjct: 262 SPLRDLTPQNLKEKEFELVVLLNATVES--TSAVCQSRTSYIPEEIYWGFEFVPVVSLSK 319

Query: 233 SPHFYPDFSRLRE 245
           +  +  DFS+  +
Sbjct: 320 NGKYVADFSQFEQ 332


>gi|25777640 potassium inwardly-rectifying channel J15 [Homo
           sapiens]
          Length = 375

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%)

Query: 180 SLISELSPQ---EKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEV----ISP 232
           S + +L+PQ   EKE  ++V+L A  +S  TSAV ++  +  P EI+ G   V    +S 
Sbjct: 262 SPLRDLTPQNLKEKEFELVVLLNATVES--TSAVCQSRTSYIPEEIYWGFEFVPVVSLSK 319

Query: 233 SPHFYPDFSRLRE 245
           +  +  DFS+  +
Sbjct: 320 NGKYVADFSQFEQ 332


>gi|25777638 potassium inwardly-rectifying channel J15 [Homo
           sapiens]
          Length = 375

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%)

Query: 180 SLISELSPQ---EKEDSVIVVLIAETDSQYTSAVTENIKALFPTEIHSGLLEV----ISP 232
           S + +L+PQ   EKE  ++V+L A  +S  TSAV ++  +  P EI+ G   V    +S 
Sbjct: 262 SPLRDLTPQNLKEKEFELVVLLNATVES--TSAVCQSRTSYIPEEIYWGFEFVPVVSLSK 319

Query: 233 SPHFYPDFSRLRE 245
           +  +  DFS+  +
Sbjct: 320 NGKYVADFSQFEQ 332


>gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]
          Length = 3095

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 39   LVTACLPPAGDVVDVYQREFLALRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRD 98
            LV A   P G ++D+    F  ++     +E ESL+  +  N      +  V     LRD
Sbjct: 3002 LVGAVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFN------EDGVIRPYRLRD 3055

Query: 99   GDGNR 103
            G GN+
Sbjct: 3056 GTGNQ 3060


>gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]
          Length = 3069

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 39   LVTACLPPAGDVVDVYQREFLALRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRD 98
            LV A   P G ++D+    F  ++     +E ESL+  +  N      +  V     LRD
Sbjct: 3002 LVGAVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFN------EDGVIRPYRLRD 3055

Query: 99   GDGNR 103
            G GN+
Sbjct: 3056 GTGNQ 3060


>gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]
          Length = 3174

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 39   LVTACLPPAGDVVDVYQREFLALRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRD 98
            LV A   P G ++D+    F  ++     +E ESL+  +  N      +  V     LRD
Sbjct: 3002 LVGAVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFN------EDGVIRPYRLRD 3055

Query: 99   GDGNR 103
            G GN+
Sbjct: 3056 GTGNQ 3060


>gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]
          Length = 3135

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 39   LVTACLPPAGDVVDVYQREFLALRDRLHAAEQESLKRSKELNLVLDEIKRAVSERQALRD 98
            LV A   P G ++D+    F  ++     +E ESL+  +  N      +  V     LRD
Sbjct: 2963 LVGAVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFN------EDGVIRPYRLRD 3016

Query: 99   GDGNR 103
            G GN+
Sbjct: 3017 GTGNQ 3021


>gi|209915591 ribosomal protein S6 kinase, 52kDa, polypeptide 1
           isoform b [Homo sapiens]
          Length = 1054

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 245 ESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPS 304
           ES    +E V+ RT +     +LM       +Y     DD+   P  LS+   + L+ P+
Sbjct: 268 ESSPTRREAVKRRTAE-----YLMRAESISSLYGKPQLDDVSQPPGSLSSRPLWNLRSPA 322

Query: 305 EDWMILEFSQLGFIGKMFKSLDLSLIVEFIL 335
           E+  +  F  LG I K+   +D      FIL
Sbjct: 323 EE--LKAFRVLGVIDKVLLVMDTRTEQTFIL 351


>gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1
           isoform a [Homo sapiens]
          Length = 1066

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 245 ESFGDPKERVRWRTKQNLDYCFLMMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPS 304
           ES    +E V+ RT +     +LM       +Y     DD+   P  LS+   + L+ P+
Sbjct: 280 ESSPTRREAVKRRTAE-----YLMRAESISSLYGKPQLDDVSQPPGSLSSRPLWNLRSPA 334

Query: 305 EDWMILEFSQLGFIGKMFKSLDLSLIVEFIL 335
           E+  +  F  LG I K+   +D      FIL
Sbjct: 335 EE--LKAFRVLGVIDKVLLVMDTRTEQTFIL 363


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,881,563
Number of Sequences: 37866
Number of extensions: 1002316
Number of successful extensions: 2625
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2608
Number of HSP's gapped (non-prelim): 21
length of query: 563
length of database: 18,247,518
effective HSP length: 107
effective length of query: 456
effective length of database: 14,195,856
effective search space: 6473310336
effective search space used: 6473310336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.