Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 167555119

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|167555119 thymosin beta15b [Homo sapiens]
         (45 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|167555119 thymosin beta15b [Homo sapiens]                           92   7e-20
gi|11496273 thymosin-like 8 [Homo sapiens]                             92   7e-20
gi|11056061 thymosin, beta 4 [Homo sapiens]                            70   3e-13
gi|34013530 thymosin-like 3 [Homo sapiens]                             69   1e-12
gi|10863895 thymosin, beta 10 [Homo sapiens]                           64   3e-11
gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]               64   3e-11
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]            63   4e-11
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ...    63   4e-11
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ...    63   4e-11
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ...    55   9e-09
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ...    55   9e-09
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa...    54   4e-08
gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    39   7e-04
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    39   7e-04
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens]    39   7e-04
gi|38570109 CAP-binding protein complex interacting protein 1 is...    27   2.7  
gi|38570107 CAP-binding protein complex interacting protein 1 is...    27   2.7  
gi|221219020 NYD-SP11 protein [Homo sapiens]                           27   3.5  
gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ...    27   4.6  
gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ...    27   4.6  
gi|24430183 outer dense fiber of sperm tails 2 isoform 2 [Homo s...    26   7.8  
gi|24430181 outer dense fiber of sperm tails 2 isoform 1 [Homo s...    26   7.8  

>gi|167555119 thymosin beta15b [Homo sapiens]
          Length = 45

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45
          MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS
Sbjct: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45


>gi|11496273 thymosin-like 8 [Homo sapiens]
          Length = 45

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45
          MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS
Sbjct: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45


>gi|11056061 thymosin, beta 4 [Homo sapiens]
          Length = 44

 Score = 70.5 bits (171), Expect = 3e-13
 Identities = 31/40 (77%), Positives = 38/40 (95%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
          MSDKPD++E+EKFD+SKLKKT T+EKN LPSKETI+QEK+
Sbjct: 1  MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQ 40


>gi|34013530 thymosin-like 3 [Homo sapiens]
          Length = 44

 Score = 68.6 bits (166), Expect = 1e-12
 Identities = 30/40 (75%), Positives = 37/40 (92%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
          MSDKPD++E+EKFD+ KLKKT T+EKN LPSKETI+QEK+
Sbjct: 1  MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQ 40


>gi|10863895 thymosin, beta 10 [Homo sapiens]
          Length = 44

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 27/39 (69%), Positives = 35/39 (89%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
          M+DKPD+ E+  FD++KLKKT T+EKNTLP+KETI+QEK
Sbjct: 1  MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEK 39


>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
          Length = 44

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 28/40 (70%), Positives = 36/40 (90%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
          MSDKP ++E+EKFD+SKLKKT T+EKN L SKETI+QE++
Sbjct: 1  MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQ 40


>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 45

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 31/44 (70%), Positives = 36/44 (81%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
          MS KPD+S+V KFDR KLKK N +EKNTL  +ETIQQEKE +QT
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44


>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
          sapiens]
          Length = 45

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 31/44 (70%), Positives = 36/44 (81%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
          MS KPD+S+V KFDR KLKK N +EKNTL  +ETIQQEKE +QT
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44


>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
          sapiens]
          Length = 45

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 31/44 (70%), Positives = 36/44 (81%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
          MS KPD+S+V KFDR KLKK N +EKNTL  +ETIQQEKE +QT
Sbjct: 1  MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKEYIQT 44


>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
          sapiens]
          Length = 158

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
          MSDK ++ E+EKF +SKLKKT  +EKN  PSKE I+QEK+
Sbjct: 1  MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQ 40


>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
          sapiens]
          Length = 158

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
          MSDK ++ E+EKF +SKLKKT  +EKN  PSKE I+QEK+
Sbjct: 1  MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQ 40


>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
           sapiens]
          Length = 281

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 2   SDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
           SDK ++ E+EKF +SKLKKT  +EKN  PSKE I+QEK+
Sbjct: 125 SDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQ 163


>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
          M+ K DL E+   D++KLK T  + KNTL +KET +QEK
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38


>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
          M+ K DL E+   D++KLK T  + KNTL +KET +QEK
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38


>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
          sapiens]
          Length = 43

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 1  MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEK 39
          M+ K DL E+   D++KLK T  + KNTL +KET +QEK
Sbjct: 1  MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38


>gi|38570109 CAP-binding protein complex interacting protein 1
           isoform b [Homo sapiens]
          Length = 1349

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 5/40 (12%)

Query: 4   KPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQ 43
           +PDLSE     R+KL +  T     + ++E I++ K+C+Q
Sbjct: 447 QPDLSE-----RTKLTEDKTTLTKKMTTEEVIEKFKKCIQ 481


>gi|38570107 CAP-binding protein complex interacting protein 1
           isoform a [Homo sapiens]
          Length = 1501

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 5/40 (12%)

Query: 4   KPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQ 43
           +PDLSE     R+KL +  T     + ++E I++ K+C+Q
Sbjct: 599 QPDLSE-----RTKLTEDKTTLTKKMTTEEVIEKFKKCIQ 633


>gi|221219020 NYD-SP11 protein [Homo sapiens]
          Length = 2873

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 9    EVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
            +VEK +  K KK   ++K  +  KE + +EKE
Sbjct: 2279 QVEKEEEEKKKKKKEKKKEEVQEKEEVFEEKE 2310


>gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2
           [Homo sapiens]
          Length = 585

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 9/42 (21%), Positives = 26/42 (61%)

Query: 4   KPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45
           K  + E ++  +   +K  + +K+++ + +  Q+E++C++TS
Sbjct: 161 KTSVKETQRTFKGNAQKMFSPKKHSVSTSDRNQEERQCIKTS 202


>gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1
           [Homo sapiens]
          Length = 851

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 9/42 (21%), Positives = 26/42 (61%)

Query: 4   KPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKECVQTS 45
           K  + E ++  +   +K  + +K+++ + +  Q+E++C++TS
Sbjct: 161 KTSVKETQRTFKGNAQKMFSPKKHSVSTSDRNQEERQCIKTS 202


>gi|24430183 outer dense fiber of sperm tails 2 isoform 2 [Homo
           sapiens]
          Length = 638

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 15  RSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
           R  +++   E+  T+  K+ +QQEKEC+ +
Sbjct: 161 RHNIERMKEEKDFTILQKKHLQQEKECLMS 190


>gi|24430181 outer dense fiber of sperm tails 2 isoform 1 [Homo
           sapiens]
          Length = 805

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 15  RSKLKKTNTEEKNTLPSKETIQQEKECVQT 44
           R  +++   E+  T+  K+ +QQEKEC+ +
Sbjct: 156 RHNIERMKEEKDFTILQKKHLQQEKECLMS 185


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.297    0.115    0.292 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,665,052
Number of Sequences: 37866
Number of extensions: 46943
Number of successful extensions: 169
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 22
length of query: 45
length of database: 18,247,518
effective HSP length: 19
effective length of query: 26
effective length of database: 17,528,064
effective search space: 455729664
effective search space used: 455729664
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press