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Search of human proteins with 11056061
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11056061 thymosin, beta 4 [Homo sapiens]
(44 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11056061 thymosin, beta 4 [Homo sapiens] 90 3e-19
gi|34013530 thymosin-like 3 [Homo sapiens] 88 1e-18
gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens] 83 4e-17
gi|167555119 thymosin beta15b [Homo sapiens] 70 3e-13
gi|11496273 thymosin-like 8 [Homo sapiens] 70 3e-13
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 70 5e-13
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 70 5e-13
gi|10863895 thymosin, beta 10 [Homo sapiens] 69 6e-13
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 68 2e-12
gi|239754119 PREDICTED: hypothetical protein [Homo sapiens] 50 3e-07
gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo ... 50 3e-07
gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo ... 50 3e-07
gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 42 1e-04
gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 42 1e-04
gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo sapiens] 42 1e-04
gi|7662168 suppression of tumorigenicity 18 [Homo sapiens] 28 2.1
gi|42734430 polymerase I and transcript release factor [Homo sap... 27 2.7
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso... 27 2.7
gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo sa... 27 3.5
gi|13128860 histone deacetylase 1 [Homo sapiens] 27 4.6
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens] 27 4.6
gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens] 27 4.6
gi|18093112 ABT1-associated protein [Homo sapiens] 27 4.6
gi|221219020 NYD-SP11 protein [Homo sapiens] 26 6.0
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 26 6.0
gi|31543535 R3H domain containing 1 [Homo sapiens] 26 7.8
gi|197927454 DEK oncogene isoform 2 [Homo sapiens] 26 7.8
gi|4503249 DEK oncogene isoform 1 [Homo sapiens] 26 7.8
gi|38044290 zinc finger, CCHC domain containing 8 [Homo sapiens] 26 7.8
>gi|11056061 thymosin, beta 4 [Homo sapiens]
Length = 44
Score = 90.1 bits (222), Expect = 3e-19
Identities = 44/44 (100%), Positives = 44/44 (100%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES 44
MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES
Sbjct: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES 44
>gi|34013530 thymosin-like 3 [Homo sapiens]
Length = 44
Score = 88.2 bits (217), Expect = 1e-18
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES 44
MSDKPDMAEIEKFDK KLKKTETQEKNPLPSKETIEQEKQAGES
Sbjct: 1 MSDKPDMAEIEKFDKPKLKKTETQEKNPLPSKETIEQEKQAGES 44
>gi|4759244 thymosin, beta 4, Y chromosome [Homo sapiens]
Length = 44
Score = 83.2 bits (204), Expect = 4e-17
Identities = 41/44 (93%), Positives = 42/44 (95%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES 44
MSDKP MAEIEKFDKSKLKKTETQEKNPL SKETIEQE+QAGES
Sbjct: 1 MSDKPGMAEIEKFDKSKLKKTETQEKNPLSSKETIEQERQAGES 44
>gi|167555119 thymosin beta15b [Homo sapiens]
Length = 45
Score = 70.5 bits (171), Expect = 3e-13
Identities = 31/40 (77%), Positives = 38/40 (95%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQ 40
MSDKPD++E+EKFD+SKLKKT T+EKN LPSKETI+QEK+
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
>gi|11496273 thymosin-like 8 [Homo sapiens]
Length = 45
Score = 70.5 bits (171), Expect = 3e-13
Identities = 31/40 (77%), Positives = 38/40 (95%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQ 40
MSDKPD++E+EKFD+SKLKKT T+EKN LPSKETI+QEK+
Sbjct: 1 MSDKPDLSEVEKFDRSKLKKTNTEEKNTLPSKETIQQEKE 40
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 69.7 bits (169), Expect = 5e-13
Identities = 35/42 (83%), Positives = 36/42 (85%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAG 42
MSDK +M EIEKF KSKLKKTE QEKNP PSKE IEQEKQAG
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 42
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 69.7 bits (169), Expect = 5e-13
Identities = 35/42 (83%), Positives = 36/42 (85%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAG 42
MSDK +M EIEKF KSKLKKTE QEKNP PSKE IEQEKQAG
Sbjct: 1 MSDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 42
>gi|10863895 thymosin, beta 10 [Homo sapiens]
Length = 44
Score = 69.3 bits (168), Expect = 6e-13
Identities = 32/41 (78%), Positives = 37/41 (90%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQA 41
M+DKPDM EI FDK+KLKKTETQEKN LP+KETIEQEK++
Sbjct: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRS 41
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 67.8 bits (164), Expect = 2e-12
Identities = 34/41 (82%), Positives = 35/41 (85%)
Query: 2 SDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAG 42
SDK +M EIEKF KSKLKKTE QEKNP PSKE IEQEKQAG
Sbjct: 125 SDKSNMDEIEKFSKSKLKKTEMQEKNPQPSKEWIEQEKQAG 165
>gi|239754119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 45
Score = 50.4 bits (119), Expect = 3e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQ 40
MS KPDM+++ KFD+ KLKK +EKN L +ETI+QEK+
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
>gi|239748631 PREDICTED: hypothetical protein XP_002346748 [Homo
sapiens]
Length = 45
Score = 50.4 bits (119), Expect = 3e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQ 40
MS KPDM+++ KFD+ KLKK +EKN L +ETI+QEK+
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
>gi|239742658 PREDICTED: hypothetical protein XP_002342605 [Homo
sapiens]
Length = 45
Score = 50.4 bits (119), Expect = 3e-07
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQ 40
MS KPDM+++ KFD+ KLKK +EKN L +ETI+QEK+
Sbjct: 1 MSYKPDMSKVGKFDREKLKKINNKEKNTLLPQETIQQEKE 40
>gi|169183848 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEK 39
M+ K D+ EI DK+KLK TE Q KN L +KET EQEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|169179692 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEK 39
M+ K D+ EI DK+KLK TE Q KN L +KET EQEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|169180100 PREDICTED: similar to thymosin, beta 10 [Homo
sapiens]
Length = 43
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEK 39
M+ K D+ EI DK+KLK TE Q KN L +KET EQEK
Sbjct: 1 MAHKLDLEEIASLDKAKLKATEMQ-KNTLMTKETTEQEK 38
>gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]
Length = 1047
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 13 FDKSKLKKTETQEKNPLPSKETIEQEKQAGES 44
+ K+ K E +EK+P+ S E +E++K GE+
Sbjct: 672 YSKTHGKTEEEKEKDPVSSLENLEEKKFPGEA 703
>gi|42734430 polymerase I and transcript release factor [Homo
sapiens]
Length = 390
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 11 EKFDKSKLKKTETQEKNPLPSKETIEQEKQAGE 43
EK +K+K++ E EK L +KE +E+ + E
Sbjct: 239 EKMEKTKVRTRENLEKTRLKTKENLEKTRHTLE 271
>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
isoform 2 [Homo sapiens]
Length = 470
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES 44
+ D+P + ++K +K K+ + +EK KE + E+ +G+S
Sbjct: 262 LKDEPKIKLLKKPEKGDEKELDKREKAKKLDKENLSDERASGQS 305
>gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo
sapiens]
Length = 184
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 3 DKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAG 42
+K +A E+ K + K+ + +EK L K +EQ+KQ G
Sbjct: 114 EKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEG 153
>gi|13128860 histone deacetylase 1 [Homo sapiens]
Length = 482
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 13 FDKSKLKKTETQ-EKNPLPSKETIEQEKQAGE 43
F K+K KTE + EK+P KE E+EK E
Sbjct: 437 FKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEE 468
>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
Length = 4967
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 1 MSDKPDMAEI-EKFDKSKLKKTETQEKNPLPSKETIEQEKQAGE 43
MS+ M E+ EKF + K K+ E +EK S E EK GE
Sbjct: 4406 MSNPVPMPEVQEKFQEQKAKEEEKEEKEETKS----EPEKAEGE 4445
>gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]
Length = 3092
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 12 KFDKSKLKKTETQEKNPLPSKETIEQEK 39
KF ++KLKK E QEK K ++E+EK
Sbjct: 732 KFFQTKLKK-ELQEKRKAARKRSLEEEK 758
>gi|18093112 ABT1-associated protein [Homo sapiens]
Length = 851
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 15 KSKLKKTETQEKNPLPSKETIEQEKQ 40
+ K+KK +TQ K + SK +E++K+
Sbjct: 91 QKKIKKKKTQTKKEIDSKNLVEKKKE 116
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 9 EIEKFDKSKLKKTETQEKNPLPSKETIEQEKQ 40
++EK ++ K KK + ++K + KE + +EK+
Sbjct: 2279 QVEKEEEEKKKKKKEKKKEEVQEKEEVFEEKE 2310
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 3 DKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQE 38
+KP E++K K ++KK E +E KET +E
Sbjct: 673 EKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKE 708
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 2 SDKPDMAEI--EKFDKSKLKKTETQEKNPLPSKETIEQEK 39
S P EI E +K +++ T++ EK PSK+ E+EK
Sbjct: 88 SPPPPAPEISQENQEKIQIQLTQSFEKEEKPSKDEAEKEK 127
>gi|197927454 DEK oncogene isoform 2 [Homo sapiens]
Length = 341
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEK 39
+SD+ E EK +K + E +E P K+T ++EK
Sbjct: 192 LSDESSSDEDEKKNKEESSDDEDKESEEEPPKKTAKREK 230
>gi|4503249 DEK oncogene isoform 1 [Homo sapiens]
Length = 375
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEK 39
+SD+ E EK +K + E +E P K+T ++EK
Sbjct: 226 LSDESSSDEDEKKNKEESSDDEDKESEEEPPKKTAKREK 264
>gi|38044290 zinc finger, CCHC domain containing 8 [Homo sapiens]
Length = 707
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 9 EIEKFDKSKLKKTETQEKN----------PLPSKETIEQEKQAGES 44
EIE+F + +K+ E Q+KN P PS +E++ + ES
Sbjct: 111 EIEEFVSNLVKRFEEQQKNDVEKTSFNLLPQPSSIVLEEDHKVEES 156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.293 0.115 0.287
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,701,854
Number of Sequences: 37866
Number of extensions: 49235
Number of successful extensions: 194
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 30
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.