Guide to the Human Genome
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Name: C4orf47 Sequence: fasta or formatted (309aa) NCBI GI: 167234417
Description:

hypothetical protein LOC441054

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         21           2
 C cysteine            0.3          1           1
 D aspartate           4.2         13           2
 E glutamate           5.8         18           2
 F phenylalanine       5.5         17           2
 G glycine             9.4         29           2
 H histidine           2.3          7           2
 I isoleucine          3.9         12           1
 K lysine             12.3         38           3
 L leucine             5.5         17           2
 M methionine          2.6          8           1
 N asparagine          5.8         18           1
 P proline             8.7         27           2
 Q glutamine           1.9          6           1
 R arginine            3.9         12           3
 S serine              8.4         26           2
 T threonine           3.6         11           1
 V valine              3.2         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.8         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC441054 
ZNF609                0.011   zinc finger protein 609 
FPGS                  0.010   folylpolyglutamate synthase isoform b 
FPGS                  0.010   folylpolyglutamate synthase isoform a precursor [Hom...
HOOK3                 0.010   golgi-associated microtubule-binding protein HOOK3 [...
PPP2R5D               0.008   delta isoform of regulatory subunit B56, protein pho...
PPP2R5D               0.008   delta isoform of regulatory subunit B56, protein phos...
SCUBE1                0.008   signal peptide, CUB domain, EGF-like 1 
TNFAIP2               0.007   tumor necrosis factor, alpha-induced protein 2 [Homo...
ADAM8                 0.005   ADAM metallopeptidase domain 8 precursor 
LRRCC1                0.005   sodium channel associated protein 2 isoform b [Homo...
LRRCC1                0.005   sodium channel associated protein 2 isoform a [Homo...
PPIL4                 0.005   peptidylprolyl isomerase-like 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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