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Search of human proteins with 16306584
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16306584 F-box and leucine-rich repeat protein 3 [Homo
sapiens]
(428 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16306584 F-box and leucine-rich repeat protein 3 [Homo sapiens] 872 0.0
gi|148922963 F-box and leucine-rich repeat protein 21 [Homo sapi... 632 0.0
gi|22748931 F-box and leucine-rich repeat protein 14 [Homo sapiens] 52 1e-06
gi|22547146 F-box and leucine-rich repeat protein 8 [Homo sapiens] 48 2e-05
gi|23397500 F-box protein 39 [Homo sapiens] 47 3e-05
gi|16306595 S-phase kinase-associated protein 2 isoform 1 [Homo ... 44 3e-04
gi|14249170 S-phase kinase-associated protein 2 isoform 2 [Homo ... 44 3e-04
gi|42558258 F-box protein 33 [Homo sapiens] 44 4e-04
gi|8923179 F-box and leucine-rich repeat protein 12 [Homo sapiens] 39 0.012
gi|161333854 F-box and leucine-rich repeat protein 13 isoform 2 ... 37 0.026
gi|161333852 F-box and leucine-rich repeat protein 13 isoform 1 ... 37 0.026
gi|122937219 F-box protein 41 [Homo sapiens] 36 0.059
gi|6912466 F-box and leucine-rich repeat protein 7 [Homo sapiens] 36 0.077
gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens] 35 0.100
gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [H... 34 0.22
gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [H... 34 0.22
gi|254039600 F-box and leucine-rich repeat protein 17 [Homo sapi... 33 0.38
gi|16306582 F-box and leucine-rich repeat protein 2 [Homo sapiens] 33 0.38
gi|61742136 F-box and leucine-rich repeat protein 6 isoform 2 [H... 33 0.38
gi|16306576 F-box and leucine-rich repeat protein 6 isoform 1 [H... 33 0.38
gi|28558969 mediator complex subunit 23 isoform b [Homo sapiens] 33 0.65
gi|28558971 mediator complex subunit 23 isoform a [Homo sapiens] 33 0.65
gi|62865871 coiled-coil domain containing 132 isoform a [Homo sa... 33 0.65
gi|24025682 F-box and leucine-rich repeat protein 16 [Homo sapiens] 32 0.85
gi|83035136 F-box protein 31 [Homo sapiens] 32 1.1
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens] 32 1.1
gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens] 32 1.1
gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens] 32 1.1
gi|51873034 F-box and leucine-rich repeat protein 9 [Homo sapiens] 32 1.1
gi|16306591 F-box and leucine-rich repeat protein 9 [Homo sapiens] 32 1.1
>gi|16306584 F-box and leucine-rich repeat protein 3 [Homo sapiens]
Length = 428
Score = 872 bits (2254), Expect = 0.0
Identities = 428/428 (100%), Positives = 428/428 (100%)
Query: 1 MKRGGRDSDRNSSEEGTAEKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHAS 60
MKRGGRDSDRNSSEEGTAEKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHAS
Sbjct: 1 MKRGGRDSDRNSSEEGTAEKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHAS 60
Query: 61 QVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSS 120
QVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSS
Sbjct: 61 QVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSS 120
Query: 121 KESAEAACDILSQLVNCSLKTLGLISTARPSFMDLPKSHFISALTVVFVNSKSLSSLKID 180
KESAEAACDILSQLVNCSLKTLGLISTARPSFMDLPKSHFISALTVVFVNSKSLSSLKID
Sbjct: 121 KESAEAACDILSQLVNCSLKTLGLISTARPSFMDLPKSHFISALTVVFVNSKSLSSLKID 180
Query: 181 DTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDEL 240
DTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDEL
Sbjct: 181 DTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDEL 240
Query: 241 LLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYEEEF 300
LLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYEEEF
Sbjct: 241 LLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYEEEF 300
Query: 301 DPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIRIAERCKN 360
DPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIRIAERCKN
Sbjct: 301 DPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIRIAERCKN 360
Query: 361 LSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWEVSKHLGRVW 420
LSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWEVSKHLGRVW
Sbjct: 361 LSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWEVSKHLGRVW 420
Query: 421 FPDMMPTW 428
FPDMMPTW
Sbjct: 421 FPDMMPTW 428
>gi|148922963 F-box and leucine-rich repeat protein 21 [Homo
sapiens]
Length = 434
Score = 632 bits (1630), Expect = 0.0
Identities = 307/434 (70%), Positives = 362/434 (83%), Gaps = 6/434 (1%)
Query: 1 MKRGGRDSDRNSSEEGTAEKSKK------LRTTNEHSQTCDWGNLLQDIILQVFKYLPLL 54
MKR + + A K K L T+ H+ DWG+L ++LQ+F+YLPLL
Sbjct: 1 MKRNSLSVENKIVQLSGAAKQPKVGFYSSLNQTHTHTVLLDWGSLPHHVVLQIFQYLPLL 60
Query: 55 DRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVS 114
DRA AS VCR WN+VFH+ DLWR FEFELNQ ATS K+THP+LI+QIIK+H HLQYVS
Sbjct: 61 DRACASSVCRRWNEVFHISDLWRKFEFELNQSATSSFKSTHPDLIQQIIKKHFAHLQYVS 120
Query: 115 FKVDSSKESAEAACDILSQLVNCSLKTLGLISTARPSFMDLPKSHFISALTVVFVNSKSL 174
FKVDSS ESAEAACDILSQLVNCS++TLGLISTA+PSFM++ +SHF+SALTVVF+NSKSL
Sbjct: 121 FKVDSSAESAEAACDILSQLVNCSIQTLGLISTAKPSFMNVSESHFVSALTVVFINSKSL 180
Query: 175 SSLKIDDTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYH 234
SS+KI+DTPVDDPSLK+LVANNSDTL+L KMSSCPHVS GILCVAD+C GLRELALNY+
Sbjct: 181 SSIKIEDTPVDDPSLKILVANNSDTLRLPKMSSCPHVSSDGILCVADRCQGLRELALNYY 240
Query: 235 LLSDELLLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFF 294
+L+DEL LALSSE HV LEHLRIDVVSENPGQ FH ++K SWDA I+HSP+VN+VM+FF
Sbjct: 241 ILTDELFLALSSETHVNLEHLRIDVVSENPGQIKFHAVKKHSWDALIKHSPRVNVVMHFF 300
Query: 295 LYEEEFDPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIRI 354
LYEEEF+ FF+ E P THLYFGRSVSK VLGRVG+ CPRL+ELVVCAN L+PLD ELI I
Sbjct: 301 LYEEEFETFFKEETPVTHLYFGRSVSKVVLGRVGLNCPRLIELVVCANDLQPLDNELICI 360
Query: 355 AERCKNLSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWEVSK 414
AE C NL+A+GL +CEVSCSAF+ FV++C RL+QLS+MEEVLIPD+ YSL++IH EVSK
Sbjct: 361 AEHCTNLTALGLSKCEVSCSAFIRFVRLCERRLTQLSVMEEVLIPDEDYSLDEIHTEVSK 420
Query: 415 HLGRVWFPDMMPTW 428
+LGRVWFPD+MP W
Sbjct: 421 YLGRVWFPDVMPLW 434
>gi|22748931 F-box and leucine-rich repeat protein 14 [Homo sapiens]
Length = 418
Score = 51.6 bits (122), Expect = 1e-06
Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 21/208 (10%)
Query: 39 LLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPEL 98
L +++ +F YL + D+ A+QVC W + +WR E +L +L+ +P L
Sbjct: 8 LFPELLAMIFGYLDVRDKGRAAQVCTAWRDAAYHKSVWRGVEAKL------HLRRANPSL 61
Query: 99 IKQIIKRHSNHLQYVSFKVDSS---KESAEAACDILSQLVNCSLKTLG-----LISTARP 150
+ R +Q +S + S + A LS N + LG I + R
Sbjct: 62 FPSLQARGIRRVQILSLRRSLSYVIQGMANIESLNLSGCYNLTDNGLGHAFVQEIGSLRA 121
Query: 151 SFMDLPKSHFISALTVVFVNSKSLSSLKIDDTPVDDPSLKVLVANNSDTLKLLKMSSCPH 210
+ L K S+L + K L L++ + +L+A LK L + SC H
Sbjct: 122 LNLSLCKQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRH 181
Query: 211 VSPAGI-------LCVADQCHGLRELAL 231
+S GI A+ C GL +L L
Sbjct: 182 LSDVGIGHLAGMTRSAAEGCLGLEQLTL 209
Score = 31.6 bits (70), Expect = 1.4
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 184 VDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLREL 229
V D SL +A D LK L + SC H+S GI + Q HGLR L
Sbjct: 292 VGDQSL-AYIAQGLDGLKSLSLCSC-HISDDGINRMVRQMHGLRTL 335
>gi|22547146 F-box and leucine-rich repeat protein 8 [Homo sapiens]
Length = 374
Score = 47.8 bits (112), Expect = 2e-05
Identities = 90/371 (24%), Positives = 131/371 (35%), Gaps = 53/371 (14%)
Query: 39 LLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWR----CFEFELNQPATSYLKAT 94
L ++++ +F++L L DRA A++VCR W +W E EL YL A
Sbjct: 8 LPEEVLALIFRHLSLRDRAAAARVCRAWAAAATCSAVWHDTKISCECELEGMLPPYLSAC 67
Query: 95 HPELIKQIIKRHSNHLQYVSFKVDSSKESAEAACDILSQLVNCS--LKTLGLISTARPSF 152
+ H+ L++ S K S AA ++L L + L+ L L
Sbjct: 68 LDHI-------HNLRLEF----EPSRKPSRRAAIELLMVLAGRAPGLRGLRLECRGEKPL 116
Query: 153 MDLPKSHFISALTVVFVNSKSLSSLKIDDTPVDDPSLKVLVANNSDTLKLLKMSSCPH-- 210
D + L V + S L+ D L+ L D L L SCP
Sbjct: 117 FDAGR----DVLEAVHAVCGAASQLRHLD-------LRRLSFTLDDALVLQAARSCPELH 165
Query: 211 ------------VSPAGILCVADQCHGLRELALNYHLLSDELLLALSSEKHVRLEHLRID 258
V P +L + + C LR L L+ LS +L AL++ L +
Sbjct: 166 SLFLDNSTLVGSVGPGSVLELLEACPRLRALGLHLASLSHAILEALAAPDRAPFALLALR 225
Query: 259 VVSENPGQTHFHTIQKSSWDAFIRHSP--KVNLVMYFFLYEEEFDPFFRYEIPATHLYFG 316
P + +W A R P V L + L E + +P L
Sbjct: 226 CAC--PEDARASPLPNEAWVALRRRHPGLAVELELEPALPAESVTRVLQPAVPVAALRL- 282
Query: 317 RSVSKDVLGRVGMT----CPRLVELVVCANGLRPLDEELIRIAERCKNLSAIGLGECEVS 372
++S D +G V L L V A L+ L +A RC L + C VS
Sbjct: 283 -NLSGDTVGPVRFAAHHYAATLCALEVRAAASAELNAALEELAARCAALREVHC-FCVVS 340
Query: 373 CSAFVEFVKMC 383
S F C
Sbjct: 341 HSVLDAFRAHC 351
>gi|23397500 F-box protein 39 [Homo sapiens]
Length = 442
Score = 47.4 bits (111), Expect = 3e-05
Identities = 69/298 (23%), Positives = 122/298 (40%), Gaps = 36/298 (12%)
Query: 32 QTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATSYL 91
Q+C W L + +VF +L DR+ A+ VCR WNQ+ + +LWR + S +
Sbjct: 13 QSC-WAFLPDLCLCRVFWWLGDRDRSRAALVCRKWNQMMYSAELWR-YRTITFSGRPSRV 70
Query: 92 KATHPELIKQIIKRHSNHLQYVSFKVDSSKES--AEAACDILSQLVNCSLKTLGLISTAR 149
A+ E +K+ +L+++ K + + + + L++C K+ + +
Sbjct: 71 HASEVESAVWYVKKFGRYLEHLEVKFMNPYNAVLTKKFQVTMRGLLSCLSKSNNRLKSLS 130
Query: 150 PSFMDLPKSHFISALTVVFVNSKSLSSLKIDDTPVDDPSLKVLVANNSDTLKLL-KMSSC 208
+++L + + +++ F++S S LK +D +LK ++L +S
Sbjct: 131 IQYLELDRLVWRNSIRSSFISSLSF-FLKKMGKRLDYLNLKGARLTVEQGCQILDSLSYM 189
Query: 209 PHVSPAGILCVAD-------------------QCHGLRELALNYHLLSDELLLALSSEKH 249
+ + L + D H L L LNY+ +SDELL L E
Sbjct: 190 RNENVISELNIEDYFSHHLAVYNSPQFKKTMSTFHNLVSLNLNYNCISDELLENL-CENA 248
Query: 250 VRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYEEEFDPFFRYE 307
L + I +P H I SW R + NL + FF F+ +YE
Sbjct: 249 STLRTINIKCHVHDP---HGQVIWGMSWAKLARQA--TNLKVNFF-----FERIMKYE 296
>gi|16306595 S-phase kinase-associated protein 2 isoform 1 [Homo
sapiens]
Length = 424
Score = 43.9 bits (102), Expect = 3e-04
Identities = 57/289 (19%), Positives = 110/289 (38%), Gaps = 43/289 (14%)
Query: 22 KKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEF 81
++ + E+ W +L +++L +F L L + S VC+ W ++ LW+ +
Sbjct: 83 RRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDL 142
Query: 82 ELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSSKESAEAACDILSQLVNCSLKT 141
K HP++ +++ + ++F+ S A
Sbjct: 143 T--------GKNLHPDVTGRLLSQ-----GVIAFRCPRSFMDQPLA-------------- 175
Query: 142 LGLISTARPSFMDLPKSHF-ISALTVVFVNSKSLSSLKIDDTPVDDPSLKVLVANNSDTL 200
S R MDL S +S L + L +L ++ + DP + L N++ L
Sbjct: 176 -EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN--L 232
Query: 201 KLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDELLLALSSEKHVRLEHLRI-DV 259
L +S C S + + C L EL L++ +EKHV++ + +
Sbjct: 233 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW--------CFDFTEKHVQVAVAHVSET 284
Query: 260 VSENPGQTHFHTIQKSSWDAFIRHSPK---VNLVMYFFLYEEEFDPFFR 305
+++ + +QKS +R P ++L L + F FF+
Sbjct: 285 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 333
>gi|14249170 S-phase kinase-associated protein 2 isoform 2 [Homo
sapiens]
Length = 410
Score = 43.9 bits (102), Expect = 3e-04
Identities = 57/289 (19%), Positives = 110/289 (38%), Gaps = 43/289 (14%)
Query: 22 KKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEF 81
++ + E+ W +L +++L +F L L + S VC+ W ++ LW+ +
Sbjct: 83 RRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDL 142
Query: 82 ELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSSKESAEAACDILSQLVNCSLKT 141
K HP++ +++ + ++F+ S A
Sbjct: 143 T--------GKNLHPDVTGRLLSQ-----GVIAFRCPRSFMDQPLA-------------- 175
Query: 142 LGLISTARPSFMDLPKSHF-ISALTVVFVNSKSLSSLKIDDTPVDDPSLKVLVANNSDTL 200
S R MDL S +S L + L +L ++ + DP + L N++ L
Sbjct: 176 -EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN--L 232
Query: 201 KLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDELLLALSSEKHVRLEHLRI-DV 259
L +S C S + + C L EL L++ +EKHV++ + +
Sbjct: 233 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW--------CFDFTEKHVQVAVAHVSET 284
Query: 260 VSENPGQTHFHTIQKSSWDAFIRHSPK---VNLVMYFFLYEEEFDPFFR 305
+++ + +QKS +R P ++L L + F FF+
Sbjct: 285 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 333
>gi|42558258 F-box protein 33 [Homo sapiens]
Length = 555
Score = 43.5 bits (101), Expect = 4e-04
Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 24/262 (9%)
Query: 182 TPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDELL 241
TP SL VAN + L LL ++ P S ++ L LAL++ + E+
Sbjct: 265 TPTSLSSLSNAVANTMEHLSLLD-NNIPGNSTLITAVELERFVNLHSLALDFCDFTAEMA 323
Query: 242 LALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKSS-WDAFIRHSPKVNL-VMYFFLYEEE 299
L+ HV L+ L + V + + + W A R S + +M F + E+
Sbjct: 324 RVLTDSNHVPLQRLSLLVHNVSVMHKSLDNMPNDEHWKALSRKSTSFRVYIMAFDIKSED 383
Query: 300 FDPFFRYEIPATHLYFGRSVS------KDVLGR---VGMTCPRLVELVVCANGLRPL--- 347
+ IP ++F ++ D++ R +T L+ V+ +G L
Sbjct: 384 MLKILKPSIPLERIHFDSYITCVSGAIVDLISRQYDKFLTHFILMNDVIDTSGFPDLSDN 443
Query: 348 --DEELIRIAERCKNLSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLIPDQ---- 401
++ L+ +A RC LS + + V + ++ G L L + EE + DQ
Sbjct: 444 RNEDPLVLLAWRCTKLSLLAIHGYTVWAHNLIAIARLRGSDLKVLEVTEESIDFDQGELA 503
Query: 402 KYSLEQIH---WEVSKHLGRVW 420
++ +H +VS LG+ W
Sbjct: 504 DQDVDPVHNLIEQVSLGLGQPW 525
Score = 37.4 bits (85), Expect = 0.026
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 32 QTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLW 76
Q +L ++I+ +F +LP DR AS C +W + P LW
Sbjct: 64 QAAGAASLPSELIVHIFSFLPAPDRLRASASCSHWRECLFYPALW 108
>gi|8923179 F-box and leucine-rich repeat protein 12 [Homo
sapiens]
Length = 326
Score = 38.5 bits (88), Expect = 0.012
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 39 LLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFEL 83
L ++L++F YLP+ DR S+VC W ++ LWR + L
Sbjct: 7 LPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDDRWLWRHVDLTL 51
>gi|161333854 F-box and leucine-rich repeat protein 13 isoform 2
[Homo sapiens]
Length = 690
Score = 37.4 bits (85), Expect = 0.026
Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 48/261 (18%)
Query: 12 SSEEGTAEKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQVFH 71
+ E E+S + + CD L + ILQ+F YL L D QV W +
Sbjct: 131 AEESNFPERSSSEVFLVDETLKCDISLLPERAILQIFFYLSLKDVIICGQVNHAWMLMTQ 190
Query: 72 MPDLWRCFEFE--LNQPATSYLKAT------------------HPELIKQIIKRHSNHLQ 111
+ LW +F N Y+ +T P+ + + H +LQ
Sbjct: 191 LNSLWNAIDFSSVKNVIPDKYIVSTLQRWRLNVLRLNFRGCLLRPKTFRSV--SHCRNLQ 248
Query: 112 YV------SFKVDSSKESAEAACDILSQLVNCSLKTLGLISTARPSFMDLPKSHFISALT 165
+ +F +S + +E +L +N S T+ T R M L HF +
Sbjct: 249 ELNVSDCPTFTDESMRHISEGCPGVL--CLNLSNTTI----TNRT--MRLLPRHFHNLQN 300
Query: 166 VVFVNSKSLSSLKIDDTPVDDPSLKVL-VANNSDTLKLLKMSSCPHVSPAGILCVADQCH 224
+ + + D L+ L + N L L +S C +S G +A+ C
Sbjct: 301 LSLAYCRRFT----------DKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCT 350
Query: 225 GLRELALN-YHLLSDELLLAL 244
G+ L +N L+D + AL
Sbjct: 351 GIMHLTINDMPTLTDNCVKAL 371
>gi|161333852 F-box and leucine-rich repeat protein 13 isoform 1
[Homo sapiens]
Length = 735
Score = 37.4 bits (85), Expect = 0.026
Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 48/261 (18%)
Query: 12 SSEEGTAEKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQVFH 71
+ E E+S + + CD L + ILQ+F YL L D QV W +
Sbjct: 131 AEESNFPERSSSEVFLVDETLKCDISLLPERAILQIFFYLSLKDVIICGQVNHAWMLMTQ 190
Query: 72 MPDLWRCFEFE--LNQPATSYLKAT------------------HPELIKQIIKRHSNHLQ 111
+ LW +F N Y+ +T P+ + + H +LQ
Sbjct: 191 LNSLWNAIDFSSVKNVIPDKYIVSTLQRWRLNVLRLNFRGCLLRPKTFRSV--SHCRNLQ 248
Query: 112 YV------SFKVDSSKESAEAACDILSQLVNCSLKTLGLISTARPSFMDLPKSHFISALT 165
+ +F +S + +E +L +N S T+ T R M L HF +
Sbjct: 249 ELNVSDCPTFTDESMRHISEGCPGVL--CLNLSNTTI----TNRT--MRLLPRHFHNLQN 300
Query: 166 VVFVNSKSLSSLKIDDTPVDDPSLKVL-VANNSDTLKLLKMSSCPHVSPAGILCVADQCH 224
+ + + D L+ L + N L L +S C +S G +A+ C
Sbjct: 301 LSLAYCRRFT----------DKGLQYLNLGNGCHKLIYLDLSGCTQISVQGFRYIANSCT 350
Query: 225 GLRELALN-YHLLSDELLLAL 244
G+ L +N L+D + AL
Sbjct: 351 GIMHLTINDMPTLTDNCVKAL 371
>gi|122937219 F-box protein 41 [Homo sapiens]
Length = 936
Score = 36.2 bits (82), Expect = 0.059
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 47 VFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRH 106
+F YL HA++VCR+W V P +W E + + +L L + + H
Sbjct: 621 IFTYLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAM----LAQWCTQAH 676
Query: 107 SNHLQYVSFKVDSSKESAEAACDILSQLVNCSLKTLGLISTARPSFMDLPKSHFISALT 165
S LQ + + KES E + L++ L+ A + + L SH + LT
Sbjct: 677 SLTLQNLKPRQRGKKESKEEYARSTRGCLEAGLES--LLKAAGGNLLILRISHCPNILT 733
>gi|6912466 F-box and leucine-rich repeat protein 7 [Homo sapiens]
Length = 491
Score = 35.8 bits (81), Expect = 0.077
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 74 DLWRCFEFE---LNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSSKESAEAACDI 130
D+ CF E L+ A + TH L ++ ++ L+Y+ S KE + + C
Sbjct: 278 DMTDCFVLEDEGLHTIAAHCTQLTHLYL-RRCVRLTDEGLRYLVIYCASIKELSVSDCRF 336
Query: 131 LSQLVNCSLKTLGLISTARPSFMDLPKSHFISALTVVFVNSKSLSSLKIDDTP----VDD 186
+S L+ + + + R ++ + ++ + + +V +K S L+ + + D
Sbjct: 337 VSDF---GLREIAKLES-RLRYLSIAHCGRVTDVGIRYV-AKYCSKLRYLNARGCEGITD 391
Query: 187 PSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELAL 231
++ L A N LK L + CP VS G+ C+A C L+ L+L
Sbjct: 392 HGVEYL-AKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSL 435
Score = 32.3 bits (72), Expect = 0.85
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 44 ILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWR 77
++Q+F +LP ++VCR W + P LWR
Sbjct: 122 MVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWR 155
>gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens]
Length = 1162
Score = 35.4 bits (80), Expect = 0.100
Identities = 59/275 (21%), Positives = 110/275 (40%), Gaps = 36/275 (13%)
Query: 7 DSDRNSSEEGTAEKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNW 66
+ + +S+EEG A + L +Q D + +++ + VF+YL + +VC+ W
Sbjct: 864 EEEDDSAEEGGAAR---LNGRGSWAQDGDESWMQREVWMSVFRYLSRRELCECMRVCKTW 920
Query: 67 NQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRH------------SNHLQYVS 114
+ W C + + S KA P+ + IIKR L ++
Sbjct: 921 YK-------WCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSWTNISKKQLTWLV 973
Query: 115 FKVDSSKESAEAAC--DILSQLVNCS---LKTLGL---ISTARPSFMDLPKSHFISALTV 166
++ K+ A C +S L S L+TL L + P DL
Sbjct: 974 NRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPADKPGQD 1033
Query: 167 VFVNSKSLSSLKIDDTPVDDPSLKVLVANNSDTLKLLKMSSCPHVS--PAGILCVADQC- 223
++++ ++ + D +L+ L+ + L L +S C H++ + +L
Sbjct: 1034 NRSKLRNMTDFRLAGLDITDATLR-LIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSST 1092
Query: 224 -HGLRELAL-NYHLLSDELLLALSSEKHVRLEHLR 256
+ L EL + + L+D+ L+ L +V L LR
Sbjct: 1093 RYSLTELNMAGCNKLTDQTLIYLRRIANVTLIDLR 1127
>gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [Homo
sapiens]
Length = 565
Score = 34.3 bits (77), Expect = 0.22
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 19 EKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWR 77
EKS K +EHS +L +++L +F YL + SQV W+Q+ LW+
Sbjct: 64 EKSDKEAEVSEHSTGIT--HLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWK 120
>gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [Homo
sapiens]
Length = 691
Score = 34.3 bits (77), Expect = 0.22
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 19 EKSKKLRTTNEHSQTCDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWR 77
EKS K +EHS +L +++L +F YL + SQV W+Q+ LW+
Sbjct: 190 EKSDKEAEVSEHSTGIT--HLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWK 246
>gi|254039600 F-box and leucine-rich repeat protein 17 [Homo
sapiens]
Length = 303
Score = 33.5 bits (75), Expect = 0.38
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 314 YFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIRIAERCKNLSAIGLGEC-EVS 372
Y + +S + V CP L++ V N + DE L ++ +C+ L I G+C ++S
Sbjct: 22 YRCKQLSDTSIIAVASHCP-LLQKVHVGNQDKLTDEGLKQLGSKCRELKDIHFGQCYKIS 80
Query: 373 CSAFVEFVKMCGGRLSQLSIMEEVLIPDQKYSLEQIHWEVSKHLG 417
+ K C +L ++ + E L+ DQ H +++G
Sbjct: 81 DEGMIVIAKGC-LKLQRIYMQENKLVTDQSVKAFAEHCPELQYVG 124
>gi|16306582 F-box and leucine-rich repeat protein 2 [Homo sapiens]
Length = 423
Score = 33.5 bits (75), Expect = 0.38
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 186 DPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELAL-NYHLLSDELLLAL 244
D SL L N L++L+ + C H++ AG +A CH L ++ L L++D L+ L
Sbjct: 249 DASLTAL-GLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQL 307
Query: 245 S 245
S
Sbjct: 308 S 308
Score = 29.6 bits (65), Expect = 5.5
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 182 TPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALN-YHLLSDEL 240
T ++D +LK + N L L + SC ++ G++ + CH L+ L L+ L+D
Sbjct: 193 TQLEDEALKH-IQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDAS 251
Query: 241 LLAL 244
L AL
Sbjct: 252 LTAL 255
Score = 29.3 bits (64), Expect = 7.2
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 132 SQLVNCSLKTLGLISTARPSFMDLPK-SHFISA-LTVVFVNSKSLSSLKIDDTPVDDPSL 189
S L + SL LGL + R ++ + SH A T++ N L + +++ + S
Sbjct: 245 SNLTDASLTALGL-NCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDST 303
Query: 190 KVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHG---LRELALNYHLLSDELLL 242
+ ++ + L+ L +S C ++ GIL +++ G LR L L+ LL ++ L
Sbjct: 304 LIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVAL 359
>gi|61742136 F-box and leucine-rich repeat protein 6 isoform 2 [Homo
sapiens]
Length = 533
Score = 33.5 bits (75), Expect = 0.38
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 27 TNEHSQTCDWGNLLQ-DIILQVFKYL-----PLLDRAHASQVCRNWNQVFHMPDLWRCFE 80
T E WG+ + +I++Q+F L P+ A++VCR W + P LW
Sbjct: 102 TPEEGPDAGWGDRIPLEILVQIFGLLVAADGPMPFLGRAARVCRRWQEAASQPALWHTVT 161
Query: 81 FE---LNQPATSYLKA 93
+ +PA +KA
Sbjct: 162 LSSPLVGRPAKGGVKA 177
Score = 30.8 bits (68), Expect = 2.5
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 173 SLSSLKIDDTPVDDPSLKVL--VANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELA 230
SL L + + + S +VL + + S L+LL + C ++PAG+ + C L +L
Sbjct: 351 SLEELCLASSTCNFVSNEVLGRLLHGSPNLRLLDLRGCARITPAGLQDL--PCRELEQLH 408
Query: 231 LNYHLLSDELLLA 243
L + SD L LA
Sbjct: 409 LGLYGTSDRLTLA 421
>gi|16306576 F-box and leucine-rich repeat protein 6 isoform 1 [Homo
sapiens]
Length = 539
Score = 33.5 bits (75), Expect = 0.38
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 27 TNEHSQTCDWGNLLQ-DIILQVFKYL-----PLLDRAHASQVCRNWNQVFHMPDLWRCFE 80
T E WG+ + +I++Q+F L P+ A++VCR W + P LW
Sbjct: 102 TPEEGPDAGWGDRIPLEILVQIFGLLVAADGPMPFLGRAARVCRRWQEAASQPALWHTVT 161
Query: 81 FE---LNQPATSYLKA 93
+ +PA +KA
Sbjct: 162 LSSPLVGRPAKGGVKA 177
Score = 30.8 bits (68), Expect = 2.5
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 173 SLSSLKIDDTPVDDPSLKVL--VANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELA 230
SL L + + + S +VL + + S L+LL + C ++PAG+ + C L +L
Sbjct: 357 SLEELCLASSTCNFVSNEVLGRLLHGSPNLRLLDLRGCARITPAGLQDL--PCRELEQLH 414
Query: 231 LNYHLLSDELLLA 243
L + SD L LA
Sbjct: 415 LGLYGTSDRLTLA 427
>gi|28558969 mediator complex subunit 23 isoform b [Homo sapiens]
Length = 1365
Score = 32.7 bits (73), Expect = 0.65
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 216 ILCVADQCHGLRELALNYHLLSDELLLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKS 275
ILC+A + H E + Y ++ +LLL ++ R+ D V EN + H +Q
Sbjct: 872 ILCLAMRSHEGNEAQVCYFII--QLLLLKPNDFRNRVS----DFVKENSPE---HWLQND 922
Query: 276 SWDAFIRHSPKVNLVMYFFLYEEEFDPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLV 335
+ + K +YF E+ DP + + P +YFG +V L + R +
Sbjct: 923 WHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPIYFG-NVCLRFLPVFDIVIHRFL 981
Query: 336 ELVVCANGLRPLDEEL 351
EL+ + L L + L
Sbjct: 982 ELLPVSKSLETLLDHL 997
>gi|28558971 mediator complex subunit 23 isoform a [Homo sapiens]
Length = 1368
Score = 32.7 bits (73), Expect = 0.65
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 216 ILCVADQCHGLRELALNYHLLSDELLLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKS 275
ILC+A + H E + Y ++ +LLL ++ R+ D V EN + H +Q
Sbjct: 866 ILCLAMRSHEGNEAQVCYFII--QLLLLKPNDFRNRVS----DFVKENSPE---HWLQND 916
Query: 276 SWDAFIRHSPKVNLVMYFFLYEEEFDPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLV 335
+ + K +YF E+ DP + + P +YFG +V L + R +
Sbjct: 917 WHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPIYFG-NVCLRFLPVFDIVIHRFL 975
Query: 336 ELVVCANGLRPLDEEL 351
EL+ + L L + L
Sbjct: 976 ELLPVSKSLETLLDHL 991
>gi|62865871 coiled-coil domain containing 132 isoform a [Homo
sapiens]
Length = 964
Score = 32.7 bits (73), Expect = 0.65
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 192 LVANNSDTL--KLLKMSSCPHVSPAGIL-CVADQCHGLRELALNYH 234
L A N+DT KL C HV+P + C+AD C L E+ L+Y+
Sbjct: 295 LCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYY 340
>gi|24025682 F-box and leucine-rich repeat protein 16 [Homo sapiens]
Length = 479
Score = 32.3 bits (72), Expect = 0.85
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 192 LVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHL-LSDELLLALSSEKHV 250
LVA N L+ L +S CP ++ + VA H L EL L+ + ++D L LS+ +
Sbjct: 340 LVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSL 399
Query: 251 RLEHLR 256
R +LR
Sbjct: 400 RSLYLR 405
Score = 30.4 bits (67), Expect = 3.2
Identities = 39/218 (17%), Positives = 87/218 (39%), Gaps = 16/218 (7%)
Query: 41 QDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIK 100
+ I+ +F Y ++ +QVC+ W +V + P W H + +
Sbjct: 99 EKILNGLFWYFSACEKCVLAQVCKAWRRVLYQPKFW-----------AGLTPVLHAKELY 147
Query: 101 QIIKRHSNHLQYVSFKVDSSKESAEAACDI-LSQLVNCSLKTLGLISTARPSFMDLPKSH 159
++ ++V+ + +++ E C + +S L C +S M L +S
Sbjct: 148 NVLP--GGEKEFVNLQGFAAR-GFEGFCLVGVSDLDICEFIDNYALSKKGVKAMSLKRST 204
Query: 160 FISALTVVFVNSKSLSSLKIDDTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCV 219
A V + ++++ + +D + L ++ S + L +S C +V+ I +
Sbjct: 205 ITDAGLEVMLEQMQ-GVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAI 263
Query: 220 ADQCHGLRELALNYHLLSDELLLALSSEKHVRLEHLRI 257
+ L EL+L + ++D L ++ + LR+
Sbjct: 264 SQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRL 301
>gi|83035136 F-box protein 31 [Homo sapiens]
Length = 539
Score = 32.0 bits (71), Expect = 1.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 34 CDWGNLLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWR 77
C L ++++++F LP D +QVC + ++ H +WR
Sbjct: 65 CSLLELPPELLVEIFASLPGTDLPSLAQVCTKFRRILHTDTIWR 108
>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
Length = 843
Score = 32.0 bits (71), Expect = 1.1
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 39 LLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPE 97
L +++L++F YL D A+ VC+ ++++ + P LW+ E+ + + HPE
Sbjct: 75 LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMM---HPE 130
>gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]
Length = 686
Score = 32.0 bits (71), Expect = 1.1
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 39 LLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPE 97
L +++L++F YL D A+ VC+ ++++ + P LW+ E+ + + HPE
Sbjct: 75 LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMM---HPE 130
>gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]
Length = 585
Score = 32.0 bits (71), Expect = 1.1
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 39 LLQDIILQVFKYLPLLDRAHASQVCRNWNQVFHMPDLWRCFEFELNQPATSYLKATHPE 97
L +++L++F YL D A+ VC+ ++++ + P LW+ E+ + + HPE
Sbjct: 75 LPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMM---HPE 130
>gi|51873034 F-box and leucine-rich repeat protein 9 [Homo sapiens]
Length = 223
Score = 32.0 bits (71), Expect = 1.1
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 200 LKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDELLLALSSEKHVRLEHLRIDV 259
L+ L +S P ++ G++ VA C L LAL++ + A ++ RL+HL +
Sbjct: 102 LRQLSLSLLPELTDNGLVAVARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSS 161
Query: 260 VSENPGQT 267
S+ QT
Sbjct: 162 CSQLIEQT 169
>gi|16306591 F-box and leucine-rich repeat protein 9 [Homo sapiens]
Length = 223
Score = 32.0 bits (71), Expect = 1.1
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 200 LKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDELLLALSSEKHVRLEHLRIDV 259
L+ L +S P ++ G++ VA C L LAL++ + A ++ RL+HL +
Sbjct: 102 LRQLSLSLLPELTDNGLVAVARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSS 161
Query: 260 VSENPGQT 267
S+ QT
Sbjct: 162 CSQLIEQT 169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,992,479
Number of Sequences: 37866
Number of extensions: 670782
Number of successful extensions: 1633
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1572
Number of HSP's gapped (non-prelim): 88
length of query: 428
length of database: 18,247,518
effective HSP length: 105
effective length of query: 323
effective length of database: 14,271,588
effective search space: 4609722924
effective search space used: 4609722924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.