Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 160420328
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|160420328 iron-sulfur cluster assembly 2 [Homo sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|160420328 iron-sulfur cluster assembly 2 [Homo sapiens] 305 1e-83
gi|52426768 HESB like domain containing 2 [Homo sapiens] 54 7e-08
gi|122937394 iron-sulfur cluster assembly 1 homolog (S. cerevisi... 34 0.057
gi|38788260 bromodomain PHD finger transcription factor isoform ... 30 1.1
gi|38788274 bromodomain PHD finger transcription factor isoform ... 30 1.1
gi|169211879 PREDICTED: hypothetical protein [Homo sapiens] 29 1.8
gi|169210998 PREDICTED: hypothetical protein [Homo sapiens] 29 1.8
gi|186910286 ribonuclease H2, subunit B isoform 1 [Homo sapiens] 28 3.1
gi|214010191 ribonuclease H2, subunit B isoform 2 [Homo sapiens] 28 3.1
gi|13375872 queuine tRNA-ribosyltransferase domain containing 1 ... 28 3.1
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 28 4.1
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 28 4.1
gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC... 27 5.3
gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC... 27 5.3
gi|169211412 PREDICTED: hypothetical protein [Homo sapiens] 27 5.3
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 27 9.1
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 27 9.1
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 27 9.1
>gi|160420328 iron-sulfur cluster assembly 2 [Homo sapiens]
Length = 154
Score = 305 bits (781), Expect = 1e-83
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MAAAWGSSLTAATQRAVTPWPRGRLLTASLGPQARREASSSSPEAGEGQIRLTDSCVQRL 60
MAAAWGSSLTAATQRAVTPWPRGRLLTASLGPQARREASSSSPEAGEGQIRLTDSCVQRL
Sbjct: 1 MAAAWGSSLTAATQRAVTPWPRGRLLTASLGPQARREASSSSPEAGEGQIRLTDSCVQRL 60
Query: 61 LEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQ 120
LEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQ
Sbjct: 61 LEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQ 120
Query: 121 VDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIKL 154
VDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIKL
Sbjct: 121 VDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIKL 154
>gi|52426768 HESB like domain containing 2 [Homo sapiens]
Length = 129
Score = 53.5 bits (127), Expect = 7e-08
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 4/130 (3%)
Query: 26 LTASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEITEGSEF---LRLQVEGGGCSGF 82
++ASL R S + + LT S V ++ ++ + +++ V GC+G
Sbjct: 1 MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL 60
Query: 83 QYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQ 142
Y D Q G RV ++ + + G ++D+ ++ + S F V NNP +
Sbjct: 61 SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEF-VFNNPNIKG 119
Query: 143 GCSCGSSFSI 152
C CG SF+I
Sbjct: 120 TCGCGESFNI 129
>gi|122937394 iron-sulfur cluster assembly 1 homolog (S.
cerevisiae)-like [Homo sapiens]
Length = 132
Score = 33.9 bits (76), Expect = 0.057
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 26 LTASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEITEGSEF---LRLQVEGGGCSGF 82
++ SL R S + + LT S V ++ ++ + +++ V GC+G
Sbjct: 1 MSPSLVRATARAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGVKVGVRTRGCNGL 60
Query: 83 QYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSS 131
Y D Q G RV ++ + + G ++D+ ++ + SS
Sbjct: 61 SYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSS 109
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 8 SLTAATQRAVTPWPRGRLLTASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEITEGS 67
S + V+ P + LT++ + ++S P +GQ++LT + + +L + G+
Sbjct: 2229 STAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQPPRPQQGQVKLTMAQLTQLTQGHGGN 2288
Query: 68 EFLRLQVEGGG 78
+ L + ++G G
Sbjct: 2289 QGLTVVIQGQG 2299
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 8 SLTAATQRAVTPWPRGRLLTASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEITEGS 67
S + V+ P + LT++ + ++S P +GQ++LT + + +L + G+
Sbjct: 2103 STAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQPPRPQQGQVKLTMAQLTQLTQGHGGN 2162
Query: 68 EFLRLQVEGGG 78
+ L + ++G G
Sbjct: 2163 QGLTVVIQGQG 2173
>gi|169211879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 28.9 bits (63), Expect = 1.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 1 MAAAWGSSLTAATQRAVTPWPRGRLLTASLGPQARREASSSSPE 44
+AAA G L AA+ V PWP G + G RR+ + +PE
Sbjct: 61 VAAAGGVGLEAASSVHVHPWPAGII----AGSATRRKGTDWAPE 100
>gi|169210998 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 28.9 bits (63), Expect = 1.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 1 MAAAWGSSLTAATQRAVTPWPRGRLLTASLGPQARREASSSSPE 44
+AAA G L AA+ V PWP G + G RR+ + +PE
Sbjct: 61 VAAAGGVGLEAASSVHVHPWPAGII----AGSATRRKGTDWAPE 100
>gi|186910286 ribonuclease H2, subunit B isoform 1 [Homo sapiens]
Length = 312
Score = 28.1 bits (61), Expect = 3.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 42 SPEAGEGQIRLTDSCVQRLLEITEGSE-----FLRLQVEGGGCSGF 82
+P +GEG I L + C+Q+L E+ E F+ V+ GG F
Sbjct: 42 NPCSGEGAIYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHF 87
>gi|214010191 ribonuclease H2, subunit B isoform 2 [Homo sapiens]
Length = 257
Score = 28.1 bits (61), Expect = 3.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 42 SPEAGEGQIRLTDSCVQRLLEITEGSE-----FLRLQVEGGGCSGF 82
+P +GEG I L + C+Q+L E+ E F+ V+ GG F
Sbjct: 42 NPCSGEGAIYLFNMCLQQLFEVKVFKEKHHSWFINQSVQSGGLLHF 87
>gi|13375872 queuine tRNA-ribosyltransferase domain containing 1
[Homo sapiens]
Length = 415
Score = 28.1 bits (61), Expect = 3.1
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 56 CVQRLLEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVD-SDSLA 114
C++R +++ E F QV GC+ FS D NP++ + +Q G + + D +
Sbjct: 263 CIERGVDLFES--FFPYQVTERGCA---LTFSFDYQPNPEETLLQQNGTQEEIKCMDQIK 317
Query: 115 FVKGAQ-----VDFSQELIRSSFQVLNNPQAQQGCSC 146
++ F L +Q NP +GCSC
Sbjct: 318 KIETTGCNQEITSFEINLKEKKYQEDFNPLV-RGCSC 353
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 8 SLTAATQRAVTPWPRGR------LLTASLGPQARREASSSSPEAGEGQIRLTD 54
+LT+ + + P +GR ++ P RR ASS+S EAG + L D
Sbjct: 1332 TLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASSNSAEAGGDTVTLDD 1384
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 8 SLTAATQRAVTPWPRGR------LLTASLGPQARREASSSSPEAGEGQIRLTD 54
+LT+ + + P +GR ++ P RR ASS+S EAG + L D
Sbjct: 1332 TLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASSNSAEAGGDTVTLDD 1384
>gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC1-S3
[Homo sapiens]
Length = 1778
Score = 27.3 bits (59), Expect = 5.3
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 21 PRGRLLTASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEITEGSEFLRLQVEGGGCS 80
P G L S GP + E S + + EG ++ Q+L+ + LQ G S
Sbjct: 1330 PEGGCLLWSPGPSSSSEFSHETDSSVEGSSSASNRVAQKLISVI-------LQAHEGVPS 1382
Query: 81 GFQYKFSLDTVINP 94
G Y S V+ P
Sbjct: 1383 GHLYCISPKQVVVP 1396
>gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC1-N1
[Homo sapiens]
Length = 1755
Score = 27.3 bits (59), Expect = 5.3
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 21 PRGRLLTASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEITEGSEFLRLQVEGGGCS 80
P G L S GP + E S + + EG ++ Q+L+ + LQ G S
Sbjct: 1330 PEGGCLLWSPGPSSSSEFSHETDSSVEGSSSASNRVAQKLISVI-------LQAHEGVPS 1382
Query: 81 GFQYKFSLDTVINP 94
G Y S V+ P
Sbjct: 1383 GHLYCISPKQVVVP 1396
>gi|169211412 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 27.3 bits (59), Expect = 5.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 1 MAAAWGSSLTAATQRAVTPWPRGRLLTASLGPQARREASSSSPE 44
+AAA G L AA+ V PWP G + G R++ + +PE
Sbjct: 61 VAAAGGVGLEAASSVHVHPWPAGII----AGSATRQKGTDWAPE 100
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 26.6 bits (57), Expect = 9.1
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 3 AAWGSSLTAATQ-RAVTPWPRGRLLTASLGPQARREASSSS---PEAGEGQIRLTDSCVQ 58
A W +++ +Q R VT PR RL L P+ R ++ S + P G + R SC
Sbjct: 148 ALWRLAVSGLSQLRTVTLEPRPRL---ELQPRGRPDSCSPAALGPRDGVREARAKGSCQV 204
Query: 59 RLLEITEGS 67
+L ++GS
Sbjct: 205 DILGTSQGS 213
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 26.6 bits (57), Expect = 9.1
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 3 AAWGSSLTAATQ-RAVTPWPRGRLLTASLGPQARREASSSS---PEAGEGQIRLTDSCVQ 58
A W +++ +Q R VT PR RL L P+ R ++ S + P G + R SC
Sbjct: 148 ALWRLAVSGLSQLRTVTLEPRPRL---ELQPRGRPDSCSPAALGPRDGVREARAKGSCQV 204
Query: 59 RLLEITEGS 67
+L ++GS
Sbjct: 205 DILGTSQGS 213
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 26.6 bits (57), Expect = 9.1
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 3 AAWGSSLTAATQ-RAVTPWPRGRLLTASLGPQARREASSSS---PEAGEGQIRLTDSCVQ 58
A W +++ +Q R VT PR RL L P+ R ++ S + P G + R SC
Sbjct: 148 ALWRLAVSGLSQLRTVTLEPRPRL---ELQPRGRPDSCSPAALGPRDGVREARAKGSCQV 204
Query: 59 RLLEITEGS 67
+L ++GS
Sbjct: 205 DILGTSQGS 213
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,486,365
Number of Sequences: 37866
Number of extensions: 224975
Number of successful extensions: 651
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 18
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.