Guide to the Human Genome
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Name: ISCA1L Sequence: fasta or formatted (132aa) NCBI GI: 122937394
Description:

iron-sulfur cluster assembly 1 homolog (S. cerevisiae)-like

Referenced in:

Iron, Copper, and Arsenic Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8          9           2
 C cysteine            2.3          3           1
 D aspartate           4.5          6           1
 E glutamate           5.3          7           2
 F phenylalanine       1.5          2           1
 G glycine             6.8          9           1
 H histidine           2.3          3           1
 I isoleucine          3.0          4           1
 K lysine             11.4         15           2
 L leucine             9.1         12           2
 M methionine          1.5          2           1
 N asparagine          2.3          3           1
 P proline             3.0          4           1
 Q glutamine           3.0          4           1
 R arginine            7.6         10           1
 S serine              7.6         10           3
 T threonine           9.1         12           1
 V valine              9.8         13           1
 W tryptophan          0.8          1           1
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   iron-sulfur cluster assembly 1 homolog (S. cerevisi... 
ISCA1                 0.761   HESB like domain containing 2 
ISCA2                 0.038   iron-sulfur cluster assembly 2 
C2orf78               0.021   hypothetical protein LOC388960 
DDX39                 0.013   DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 
BAT1                  0.008   HLA-B associated transcript 1 
BAT1                  0.008   HLA-B associated transcript 1 
ATP2C1                0.008   calcium-transporting ATPase 2C1 isoform 1b 
ATP2C1                0.008   calcium-transporting ATPase 2C1 isoform 1d 
ATP2C1                0.008   calcium-transporting ATPase 2C1 isoform 1c 
ATP2C1                0.008   calcium-transporting ATPase 2C1 isoform 1a 
SEPT4                 0.008   septin 4 isoform 1 
SEPT4                 0.008   septin 4 isoform 3 
USP48                 0.004   ubiquitin specific protease 48 isoform b 
USP48                 0.004   ubiquitin specific protease 48 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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