Search of human proteins with 157412273

Search of human proteins with 157412273

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157412273 surfactant associated 3 [Homo sapiens]
         (94 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157412273 surfactant associated 3 [Homo sapiens]                   189   4e-49
gi|46048469 major facilitator superfamily domain containing 6-li...    30   0.32 
gi|195539368 coiled-coil domain containing 149 isoform 2 [Homo s...    30   0.54 
gi|27735025 coiled-coil domain containing 149 isoform 1 [Homo sa...    30   0.54 
gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]          29   0.93 
gi|224282119 splicing factor, arginine/serine-rich 14 [Homo sapi...    29   0.93 
gi|224282117 splicing factor, arginine/serine-rich 14 [Homo sapi...    29   0.93 
gi|189181750 human immunodeficiency virus type I enhancer bindin...    27   4.6  
gi|116089331 human immunodeficiency virus type I enhancer bindin...    27   4.6  
gi|239753219 PREDICTED: similar to zinc finger protein 570 [Homo...    26   6.0  
gi|113413886 PREDICTED: similar to zinc finger protein 570 [Homo...    26   6.0  
gi|239741664 PREDICTED: similar to zinc finger protein 570 [Homo...    26   6.0  
gi|4507035 solute carrier family 5 (sodium iodide symporter), me...    26   6.0  
gi|13376810 enhancer of polycomb 1 [Homo sapiens]                      26   6.0  
gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens]           26   6.0  
gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens]            26   6.0  

>gi|157412273 surfactant associated 3 [Homo sapiens]
          Length = 94

 Score =  189 bits (480), Expect = 4e-49
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MRAGFSDFQLIRDQVLFLQDQAQRLTEWLQLSGFENPVSESTTLCLREREKRIPTCVAVC 60
          MRAGFSDFQLIRDQVLFLQDQAQRLTEWLQLSGFENPVSESTTLCLREREKRIPTCVAVC
Sbjct: 1  MRAGFSDFQLIRDQVLFLQDQAQRLTEWLQLSGFENPVSESTTLCLREREKRIPTCVAVC 60

Query: 61 VPSPGTVHTALLHPTTLSQSRSSSEAKMLIIHTA 94
          VPSPGTVHTALLHPTTLSQSRSSSEAKMLIIHTA
Sbjct: 61 VPSPGTVHTALLHPTTLSQSRSSSEAKMLIIHTA 94


>gi|46048469 major facilitator superfamily domain containing 6-like
           [Homo sapiens]
          Length = 586

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 22  AQRLTEWLQLSGFENPVSESTTLCLREREKRIPTCVAVCVPSPGTVHTALLHPTTLSQSR 81
           A+R  E +++ GF NP  ES     RE  + +   +A  V    T   ALLHP T     
Sbjct: 142 AKRTAE-VEMPGFRNPPGESD----RETFRDLHVYLAPSVEGARTTSQALLHPVTSGLKD 196

Query: 82  SSSEAKMLIIHTA 94
              E    ++ TA
Sbjct: 197 HPWEVTFEVVKTA 209


>gi|195539368 coiled-coil domain containing 149 isoform 2 [Homo
           sapiens]
          Length = 529

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 1   MRAGFSDFQLIRDQVLFLQDQAQRLTEWLQ--LSGFENPVSESTTLCLRER 49
           ++A   + Q ++++    QD+ +RL + L   LSG EN + +   LC+  R
Sbjct: 171 LQASVDELQDVKEERSSYQDKVERLNQELNHILSGHENRIIDVDALCMENR 221


>gi|27735025 coiled-coil domain containing 149 isoform 1 [Homo
           sapiens]
          Length = 267

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 1   MRAGFSDFQLIRDQVLFLQDQAQRLTEWLQ--LSGFENPVSESTTLCLRER 49
           ++A   + Q ++++    QD+ +RL + L   LSG EN + +   LC+  R
Sbjct: 116 LQASVDELQDVKEERSSYQDKVERLNQELNHILSGHENRIIDVDALCMENR 166


>gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]
          Length = 2322

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 5    FSDFQLIRDQVLFLQDQAQRLTEWLQLSGFENPVSESTTLCLREREKRIPTCVAVCVPS- 63
            F+   L + +VLF+   A R    LQ+S  ++  +    +   E   R+    ++ VP  
Sbjct: 1081 FTQEDLRKRRVLFVHSGADRGWIQLQVSDGQHQATALLEVQASEPYLRVANGSSLVVPQG 1140

Query: 64   -PGTVHTALLHPTTLSQSRSSSE 85
              GT+ TA+LH  T    RS  E
Sbjct: 1141 GQGTIDTAVLHLDTNLDIRSGDE 1163


>gi|224282119 splicing factor, arginine/serine-rich 14 [Homo
           sapiens]
          Length = 1082

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 3   AGFSDFQLIRDQVLFLQDQAQRLTEWLQLSGFENPVSESTTLCLREREKRIP 54
           A F +F+   D  LF ++    L  WL  SG    V ++    +RE EK IP
Sbjct: 512 AAFPNFE---DSTLFGREYIDHLKAWLVSSGCPLQVKKAEPEPMREEEKMIP 560


>gi|224282117 splicing factor, arginine/serine-rich 14 [Homo
           sapiens]
          Length = 1082

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 3   AGFSDFQLIRDQVLFLQDQAQRLTEWLQLSGFENPVSESTTLCLREREKRIP 54
           A F +F+   D  LF ++    L  WL  SG    V ++    +RE EK IP
Sbjct: 512 AAFPNFE---DSTLFGREYIDHLKAWLVSSGCPLQVKKAEPEPMREEEKMIP 560


>gi|189181750 human immunodeficiency virus type I enhancer binding
            protein 3 b [Homo sapiens]
          Length = 2405

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 14   QVLFLQDQAQRLTEWLQLSGFENPVSESTTLC--------------LREREKRIPT-CVA 58
            Q+L  Q Q    T  + L  FE P S+ TT+C                E+ +  PT  + 
Sbjct: 1340 QILVTQSQGSSAT--VALPKFEEPPSKGTTVCGADVHEVGPGPSGLSEEQSRAFPTPYLR 1397

Query: 59   VCVPSPGTVHTALLHPTTLSQSRSSSEA 86
            V V  P    T+L   + LS   SSS A
Sbjct: 1398 VPVTLPERKGTSLSSESILSLEGSSSTA 1425


>gi|116089331 human immunodeficiency virus type I enhancer binding
            protein 3 [Homo sapiens]
          Length = 2406

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 14   QVLFLQDQAQRLTEWLQLSGFENPVSESTTLC--------------LREREKRIPT-CVA 58
            Q+L  Q Q    T  + L  FE P S+ TT+C                E+ +  PT  + 
Sbjct: 1340 QILVTQSQGSSAT--VALPKFEEPPSKGTTVCGADVHEVGPGPSGLSEEQSRAFPTPYLR 1397

Query: 59   VCVPSPGTVHTALLHPTTLSQSRSSSEA 86
            V V  P    T+L   + LS   SSS A
Sbjct: 1398 VPVTLPERKGTSLSSESILSLEGSSSTA 1425


>gi|239753219 PREDICTED: similar to zinc finger protein 570 [Homo
          sapiens]
          Length = 538

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 14 QVLFLQDQAQRLTEWLQLSGFENPVSE 40
          Q L ++D A+ LT+W QL+  +  V E
Sbjct: 52 QELMIRDMAEALTQWRQLNSPQGDVPE 78


>gi|113413886 PREDICTED: similar to zinc finger protein 570 [Homo
          sapiens]
          Length = 522

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 14 QVLFLQDQAQRLTEWLQLSGFENPVSE 40
          Q L ++D A+ LT+W QL+  +  V E
Sbjct: 36 QELMIRDMAEALTQWRQLNSPQGDVPE 62


>gi|239741664 PREDICTED: similar to zinc finger protein 570 [Homo
          sapiens]
          Length = 538

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 14 QVLFLQDQAQRLTEWLQLSGFENPVSE 40
          Q L ++D A+ LT+W QL+  +  V E
Sbjct: 52 QELMIRDMAEALTQWRQLNSPQGDVPE 78


>gi|4507035 solute carrier family 5 (sodium iodide symporter),
           member 5 [Homo sapiens]
          Length = 643

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 25  LTEWLQLSGFENPVSESTTLCLREREKRIPTCVAVCVPSPGTVHTALLHPTTLSQSRSS 83
           L+ W+ L     P SE T   L     R   CVA+ V + G +  ALL     S++ SS
Sbjct: 455 LSLWVALGATLYPPSEQTMRVLPSSAAR---CVALSVNASGLLDPALLPANDSSRAPSS 510


>gi|13376810 enhancer of polycomb 1 [Homo sapiens]
          Length = 836

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 55  TCVAVCVPSPGTVHTALLHPTTLSQSRSSSEA 86
           T  A+   SP T  +ALL P+ ++Q+ SS  A
Sbjct: 703 TPTALVHTSPSTAGSALLQPSNITQTSSSHSA 734


>gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens]
          Length = 489

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 40  ESTTLCLREREKRIPTC--VAVCVPSPGTVHTALLHPTTLSQSRSSSEAKMLIIHTA 94
           ++T + ++     +PT       VP+PG+   AL  P  L+   SS+     II T+
Sbjct: 100 KATVVSVKNPSPALPTANNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTS 156


>gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens]
          Length = 531

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 40  ESTTLCLREREKRIPTC--VAVCVPSPGTVHTALLHPTTLSQSRSSSEAKMLIIHTA 94
           ++T + ++     +PT       VP+PG+   AL  P  L+   SS+     II T+
Sbjct: 100 KATVVSVKNPSPALPTANNTVSHVPAPGSQPQALAEPAALASPLSSAGVAYAIISTS 156


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,581,224
Number of Sequences: 37866
Number of extensions: 134337
Number of successful extensions: 410
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 16
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.