Guide to the Human Genome
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Name: SFTA3 Sequence: fasta or formatted (94aa) NCBI GI: 157412273
Description:

surfactant associated 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4          6           1
 C cysteine            3.2          3           1
 D aspartate           3.2          3           1
 E glutamate           6.4          6           1
 F phenylalanine       4.3          4           1
 G glycine             3.2          3           1
 H histidine           3.2          3           1
 I isoleucine          4.3          4           2
 K lysine              2.1          2           1
 L leucine            12.8         12           2
 M methionine          2.1          2           1
 N asparagine          1.1          1           1
 P proline             5.3          5           1
 Q glutamine           7.4          7           1
 R arginine            7.4          7           1
 S serine             10.6         10           3
 T threonine           9.6          9           2
 V valine              6.4          6           1
 W tryptophan          1.1          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   surfactant associated 3 
MFSD6L                0.030   major facilitator superfamily domain containing 6-li...
CCDC149               0.030   coiled-coil domain containing 149 isoform 2 
CCDC149               0.030   coiled-coil domain containing 149 isoform 1 
CSPG4                 0.024   chondroitin sulfate proteoglycan 4 
SFRS14                0.024   splicing factor, arginine/serine-rich 14 
SFRS14                0.024   splicing factor, arginine/serine-rich 14 
HIVEP3                0.012   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.012   human immunodeficiency virus type I enhancer bindin...
LOC344065             0.006   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.006   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.006   PREDICTED: similar to zinc finger protein 570 [Homo...
SLC5A5                0.006   solute carrier family 5 (sodium iodide symporter), me...
EPC1                  0.006   enhancer of polycomb 1 
PHF21B                0.006   PHD finger protein 21B isoform 2 
PHF21B                0.006   PHD finger protein 21B isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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