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Search of human proteins with 156616308
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156616308 SET and MYND domain containing 4 [Homo sapiens]
(804 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156616308 SET and MYND domain containing 4 [Homo sapiens] 1636 0.0
gi|188035871 SET and MYND domain containing 2 [Homo sapiens] 69 2e-11
gi|12232401 SET and MYND domain containing 3 [Homo sapiens] 68 3e-11
gi|156627581 tetratricopeptide repeat domain 4 [Homo sapiens] 64 4e-10
gi|38093643 SET and MYND domain containing 1 [Homo sapiens] 52 3e-06
gi|154689858 SMYD family member 5 [Homo sapiens] 50 8e-06
gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens] 48 3e-05
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 48 4e-05
gi|75750484 cardiomyopathy associated 4 isoform 2 [Homo sapiens] 46 1e-04
gi|27477061 cardiomyopathy associated 4 isoform 1 [Homo sapiens] 46 1e-04
gi|225735593 RNA polymerase II associated protein 3 isoform 2 [H... 46 2e-04
gi|225735591 RNA polymerase II associated protein 3 isoform 1 [H... 46 2e-04
gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi... 46 2e-04
gi|89179321 smooth muscle cell associated protein-1 isoform 3 [H... 44 5e-04
gi|29725607 smooth muscle cell associated protein-1 isoform 2 [H... 44 5e-04
gi|24308141 small glutamine-rich tetratricopeptide repeat (TPR)-... 43 0.001
gi|27262638 sperm associated antigen 1 [Homo sapiens] 42 0.002
gi|27262636 sperm associated antigen 1 [Homo sapiens] 42 0.002
gi|4507711 tetratricopeptide repeat domain 1 [Homo sapiens] 39 0.019
gi|221219053 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform... 38 0.033
gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Hom... 38 0.033
gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo... 38 0.033
gi|90669931 tetratricopeptide repeat domain 12 [Homo sapiens] 38 0.043
gi|225735595 RNA polymerase II associated protein 3 isoform 3 [H... 37 0.073
gi|21361356 translocase of outer mitochondrial membrane 34 [Homo... 37 0.073
gi|221219056 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform... 36 0.12
gi|55953063 SET domain containing 4 isoform c [Homo sapiens] 36 0.12
gi|8393013 SET domain containing 4 isoform a [Homo sapiens] 36 0.12
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 36 0.16
gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens] 36 0.16
>gi|156616308 SET and MYND domain containing 4 [Homo sapiens]
Length = 804
Score = 1636 bits (4237), Expect = 0.0
Identities = 804/804 (100%), Positives = 804/804 (100%)
Query: 1 MDLPVDEWKSYLLQKWASLPTSVQVTISTAETLRDIFLHSSSLLQPEDELFLKRLSKGYL 60
MDLPVDEWKSYLLQKWASLPTSVQVTISTAETLRDIFLHSSSLLQPEDELFLKRLSKGYL
Sbjct: 1 MDLPVDEWKSYLLQKWASLPTSVQVTISTAETLRDIFLHSSSLLQPEDELFLKRLSKGYL 60
Query: 61 VGKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLG 120
VGKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLG
Sbjct: 61 VGKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLG 120
Query: 121 QYETCLKDINRAQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALA 180
QYETCLKDINRAQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALA
Sbjct: 121 QYETCLKDINRAQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALA 180
Query: 181 DVLPQTLQRNLHRLKMKMQEKDSLTESFPAALAKTLEDAALREENEQLSNASSSIGLCVD 240
DVLPQTLQRNLHRLKMKMQEKDSLTESFPAALAKTLEDAALREENEQLSNASSSIGLCVD
Sbjct: 181 DVLPQTLQRNLHRLKMKMQEKDSLTESFPAALAKTLEDAALREENEQLSNASSSIGLCVD 240
Query: 241 PLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCL 300
PLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCL
Sbjct: 241 PLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCL 300
Query: 301 KHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGVFCHIALRLTLLVGF 360
KHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGVFCHIALRLTLLVGF
Sbjct: 301 KHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGVFCHIALRLTLLVGF 360
Query: 361 EDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYEN 420
EDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYEN
Sbjct: 361 EDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYEN 420
Query: 421 NYNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPE 480
NYNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPE
Sbjct: 421 NYNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPE 480
Query: 481 LCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNH 540
LCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNH
Sbjct: 481 LCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNH 540
Query: 541 SCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACP 600
SCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACP
Sbjct: 541 SCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACP 600
Query: 601 ACQTEAHRMAAGPRWEAFCCNSCGAPMQGDDVLRCGSRSCAESAVSRDHLVSRLQDLQQQ 660
ACQTEAHRMAAGPRWEAFCCNSCGAPMQGDDVLRCGSRSCAESAVSRDHLVSRLQDLQQQ
Sbjct: 601 ACQTEAHRMAAGPRWEAFCCNSCGAPMQGDDVLRCGSRSCAESAVSRDHLVSRLQDLQQQ 660
Query: 661 VRVAQKLLRDGELERAVQRLSGCQRDAESFLWAEHAVVGEIADGLARACAALGDWQKSAT 720
VRVAQKLLRDGELERAVQRLSGCQRDAESFLWAEHAVVGEIADGLARACAALGDWQKSAT
Sbjct: 661 VRVAQKLLRDGELERAVQRLSGCQRDAESFLWAEHAVVGEIADGLARACAALGDWQKSAT 720
Query: 721 HLQRSLYVVEVRHGPSSVEMGHELFKLAQIFFNGFAVPEALSTIQKAEEVLSLHCGPWDD 780
HLQRSLYVVEVRHGPSSVEMGHELFKLAQIFFNGFAVPEALSTIQKAEEVLSLHCGPWDD
Sbjct: 721 HLQRSLYVVEVRHGPSSVEMGHELFKLAQIFFNGFAVPEALSTIQKAEEVLSLHCGPWDD 780
Query: 781 EIQELQKMKSCLLDLPPTPVGPAL 804
EIQELQKMKSCLLDLPPTPVGPAL
Sbjct: 781 EIQELQKMKSCLLDLPPTPVGPAL 804
>gi|188035871 SET and MYND domain containing 2 [Homo sapiens]
Length = 433
Score = 68.9 bits (167), Expect = 2e-11
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 516 GSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGP 575
G + D L + IFP ++L+NHSC PN V++ T+A +RA Q I+ G+E+ Y
Sbjct: 183 GFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY-- 240
Query: 576 HKSRMGVAERQQKLRSQYFFDCACPACQTE 605
+R +LR YFF C C C T+
Sbjct: 241 IDLLYPTEDRNDRLRDSYFFTCECQECTTK 270
Score = 37.0 bits (84), Expect = 0.073
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 19/95 (20%)
Query: 241 PLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCL 300
P KGR L A + G+LL A+ VL E G+ +C C
Sbjct: 15 PGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNE-----------------RGN-HCEYCF 56
Query: 301 KHTLATVPCDGCSYAKYCSQECLQQAWELYHRTEC 335
C C A YC+ EC ++ W + H+ EC
Sbjct: 57 TRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLEC 90
>gi|12232401 SET and MYND domain containing 3 [Homo sapiens]
Length = 369
Score = 68.2 bits (165), Expect = 3e-11
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 519 VTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKS 578
+ ++ + G++P ISLLNHSC PN S+ F +RA + I G+E+ CY
Sbjct: 126 ICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY--LDM 183
Query: 579 RMGVAERQQKLRSQYFFDCACPACQTE 605
M ER+++LR QY F+C C CQT+
Sbjct: 184 LMTSEERRKQLRDQYCFECDCFRCQTQ 210
Score = 33.1 bits (74), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 309 CDGCSYAKYCSQECLQQAWELYHRTEC 335
C C AKYCS +C ++AW H+ EC
Sbjct: 3 CSQCRVAKYCSAKCQKKAWP-DHKREC 28
>gi|156627581 tetratricopeptide repeat domain 4 [Homo sapiens]
Length = 387
Score = 64.3 bits (155), Expect = 4e-10
Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 22/178 (12%)
Query: 71 YREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDIN 130
Y++EGN F+EKDY A + Y++G+ + + ++ + NR+AA ++LG + + L D+
Sbjct: 82 YKDEGNDYFKEKDYKKAVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSALNDVT 141
Query: 131 RAQTHGYPERLQP---KIMLRKAECLVALGRLQEA------SQTISDLERNFTATPALAD 181
A+ +L+P K ++R A C + L EA I E+ A AD
Sbjct: 142 AAR------KLKPCHLKAIIRGALCHLELKHFAEAVNWCDEGLQIDAKEKKLLEMRAKAD 195
Query: 182 VLPQTLQRNLHRLKMKMQEKDSLTESFPAALAK---TLEDAALREENEQLSNASSSIG 236
L + QR++ + +K +++ + E+ A+ L +AA +E+ +AS +G
Sbjct: 196 KLKRIEQRDVRKANLKEKKERNQNEALLQAIKARNIRLSEAACEDED----SASEGLG 249
>gi|38093643 SET and MYND domain containing 1 [Homo sapiens]
Length = 490
Score = 51.6 bits (122), Expect = 3e-06
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 16/102 (15%)
Query: 516 GSIVTDSRQVR-LATGIFPVISLLNHSCSPNTSVSF-------------ISTVATIRASQ 561
G ++D R ++ + GIFP + L+NH C PN +V F +RA
Sbjct: 181 GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG 240
Query: 562 RIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPACQ 603
+I +G+E+ Y + ER+++L+ QY+FDC C CQ
Sbjct: 241 KISEGEELTVSYIDFLNVS--EERKRQLKKQYYFDCTCEHCQ 280
Score = 46.6 bits (109), Expect = 9e-05
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 243 KGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCLKH 302
KGR L ATK+ +++ E A+ +V+ +D+ V + CH C K
Sbjct: 17 KGRGLKATKEFWAADIIFAERAYSAVV---------------FDSLV---NFVCHTCFKR 58
Query: 303 TLATVPCDGCSYAKYCSQECLQQAWELYHRTEC 335
C C +A YC + C + AW L H+ EC
Sbjct: 59 QEKLHRCGQCKFAHYCDRTCQKDAW-LNHKNEC 90
>gi|154689858 SMYD family member 5 [Homo sapiens]
Length = 418
Score = 50.1 bits (118), Expect = 8e-06
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 529 TGIFPVISLLNHSCSPNTSVSFIST--VATIRASQRIRKGQEI----LHCYGPHKSRMGV 582
+G+F + S NHSC PN SF + + A + I+ G+EI L C +SR
Sbjct: 305 SGLFVLQSCCNHSCVPNAETSFPENNFLLHVTALEDIKPGEEICISYLDCCQRERSRHS- 363
Query: 583 AERQQKLRSQYFFDCACPACQTEA 606
R + LR Y F C+CP C EA
Sbjct: 364 --RHKILRENYLFVCSCPKCLAEA 385
>gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens]
Length = 977
Score = 48.1 bits (113), Expect = 3e-05
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 43 LLQPEDELFLKRLSKGYLVGKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNT 102
L Q E E FL +L + EGN F+EKDY A V Y +G++ +
Sbjct: 23 LKQEEYEAFLLKLVQNLFA------------EGNDLFREKDYKQALVQYMEGLNVADYAA 70
Query: 103 EDM------SLC--HANRSAALFHLGQYETCLKDINRAQTHGYPERLQPKIMLRKAECLV 154
D LC H NR+A F +G YE L+D +A + + + RKA L
Sbjct: 71 SDQVALPRELLCKLHVNRAACYFTMGLYEKALEDSEKALG---LDSESIRALFRKARALN 127
Query: 155 ALGRLQEASQTIS 167
LGR +EA + S
Sbjct: 128 ELGRHKEAYECSS 140
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 47.8 bits (112), Expect = 4e-05
Identities = 71/291 (24%), Positives = 116/291 (39%), Gaps = 59/291 (20%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
R EGN+ ++E+ A + Y++ V + PN L ++NRS F L +E L D
Sbjct: 247 RHEGNRLYRERQVEAALLKYNEAVKLA-PNDH---LLYSNRSQIYFTLESHENALHDAEI 302
Query: 132 AQTHGYPERLQP---KIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQ 188
A +L+P K RKA+ L LG+++EA R F +L D + +
Sbjct: 303 AC------KLRPMGFKAHFRKAQALATLGKVEEAL-------REFLYCVSL-DGKNKRAR 348
Query: 189 RNLHRLKMKMQEKDSLTESFPAALAKTLEDAAL------------REENEQL------SN 230
R +++ S E+ +L D A +EE E+
Sbjct: 349 CEAQRDNLELPHCSSQEEAAARGDGSSLMDPAKVKGDGQQHHMKDQEEEEEKWDATSPKA 408
Query: 231 ASSSIGLCVDPLKGRCLVATKDI--LPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTR 288
ASS G C + + C + +++ +P + Q+ + G+ P L S
Sbjct: 409 ASSKTGKCQEKKRKHCQIESQEETGMPNKASKQDPP----TDQGDKPALSLPLAS----- 459
Query: 289 VTNGDLYCHRCLK--HTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPL 337
DL C C++ + T PC G ++ C + CL H +CPL
Sbjct: 460 FDASDLECALCMRLFYEPVTTPC-GHTFCLKCLERCLD------HNAKCPL 503
>gi|75750484 cardiomyopathy associated 4 isoform 2 [Homo sapiens]
Length = 929
Score = 46.2 bits (108), Expect = 1e-04
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
+EEGN+ FQ +DY A YS+ + ++ ++ + NR+A Y D +R
Sbjct: 10 KEEGNRHFQLQDYKAATNSYSQALKLTKDKAL-LATLYRNRAACGLKTESYVQAASDASR 68
Query: 132 AQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNL 191
A + K + R+ + L LG+L +A D++R T P Q Q L
Sbjct: 69 AIDINSSD---IKALYRRCQALEHLGKLDQA---FKDVQRCATLEPR-----NQNFQEML 117
Query: 192 HRLKMKMQEKDSLTESFPAALAKTLEDAALREENEQ 227
RL +QEK + S + + K E L +EN +
Sbjct: 118 RRLNTSIQEKLRVQFSTDSRVQKMFE--ILLDENSE 151
>gi|27477061 cardiomyopathy associated 4 isoform 1 [Homo sapiens]
Length = 931
Score = 46.2 bits (108), Expect = 1e-04
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
+EEGN+ FQ +DY A YS+ + ++ ++ + NR+A Y D +R
Sbjct: 10 KEEGNRHFQLQDYKAATNSYSQALKLTKDKAL-LATLYRNRAACGLKTESYVQAASDASR 68
Query: 132 AQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNL 191
A + K + R+ + L LG+L +A D++R T P Q Q L
Sbjct: 69 AIDINSSD---IKALYRRCQALEHLGKLDQA---FKDVQRCATLEPR-----NQNFQEML 117
Query: 192 HRLKMKMQEKDSLTESFPAALAKTLEDAALREENEQ 227
RL +QEK + S + + K E L +EN +
Sbjct: 118 RRLNTSIQEKLRVQFSTDSRVQKMFE--ILLDENSE 151
>gi|225735593 RNA polymerase II associated protein 3 isoform 2 [Homo
sapiens]
Length = 631
Score = 45.8 bits (107), Expect = 2e-04
Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 40/219 (18%)
Query: 9 KSYLLQKWASLPTSVQVTISTAETLRDIFLHSSSLLQPEDELFLKRLSKGYLVGKDSDAP 68
KSY + WA L V E +D H S + E E G V DS
Sbjct: 86 KSYDYEAWAKL----DVDRILDELDKDDSTHESLSQESESE------EDGIHV--DSQKA 133
Query: 69 LFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKD 128
L +E+GNK F++ Y A Y+KG+ N + NR++A F L ++ D
Sbjct: 134 LVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYN----PVLPTNRASAYFRLKKFAVAESD 189
Query: 129 ------INRAQTHGYPERLQPKIMLRKAE---------------CLVALGRLQEASQTIS 167
+NR+ T Y R + L+K E A L++ SQ ++
Sbjct: 190 CNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALA 249
Query: 168 DLERNFTATPALADVLPQTLQRNLHRLKMKMQEKDSLTE 206
E ++ P AD++ ++ + +++ + ++ +++E
Sbjct: 250 SKENSY---PKEADIVIKSTEGERKQIEAQQNKQQAISE 285
Score = 36.6 bits (83), Expect = 0.095
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
++ GN F+E Y A Y++G++ N +L ANR+ A + +YE KD +
Sbjct: 286 KDRGNGFFKEGKYERAIECYTRGIAADGAN----ALLPANRAMAYLKIQKYEEAEKDCTQ 341
Query: 132 AQTHGYPERLQPKIMLRKAECLVALGRLQEASQ 164
A + K R+ LG+L EA Q
Sbjct: 342 AI---LLDGSYSKAFARRGTARTFLGKLNEAKQ 371
>gi|225735591 RNA polymerase II associated protein 3 isoform 1 [Homo
sapiens]
Length = 665
Score = 45.8 bits (107), Expect = 2e-04
Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 40/219 (18%)
Query: 9 KSYLLQKWASLPTSVQVTISTAETLRDIFLHSSSLLQPEDELFLKRLSKGYLVGKDSDAP 68
KSY + WA L V E +D H S + E E G V DS
Sbjct: 86 KSYDYEAWAKL----DVDRILDELDKDDSTHESLSQESESE------EDGIHV--DSQKA 133
Query: 69 LFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKD 128
L +E+GNK F++ Y A Y+KG+ N + NR++A F L ++ D
Sbjct: 134 LVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYN----PVLPTNRASAYFRLKKFAVAESD 189
Query: 129 ------INRAQTHGYPERLQPKIMLRKAE---------------CLVALGRLQEASQTIS 167
+NR+ T Y R + L+K E A L++ SQ ++
Sbjct: 190 CNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALA 249
Query: 168 DLERNFTATPALADVLPQTLQRNLHRLKMKMQEKDSLTE 206
E ++ P AD++ ++ + +++ + ++ +++E
Sbjct: 250 SKENSY---PKEADIVIKSTEGERKQIEAQQNKQQAISE 285
Score = 37.0 bits (84), Expect = 0.073
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
++ GN F+E Y A Y++G++ N +L ANR+ A + +YE KD +
Sbjct: 286 KDRGNGFFKEGKYERAIECYTRGIAADGAN----ALLPANRAMAYLKIQKYEEAEKDCTQ 341
Query: 132 AQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNL 191
A + K R+ LG+L EA Q D E P + + L
Sbjct: 342 AI---LLDGSYSKAFARRGTARTFLGKLNEAKQ---DFETVLLLEPGNKQAVTE-----L 390
Query: 192 HRLKMKMQEKDSLTESF 208
++K ++ EK + F
Sbjct: 391 SKIKKELIEKGHWDDVF 407
>gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
protein) [Homo sapiens]
Length = 543
Score = 45.8 bits (107), Expect = 2e-04
Identities = 55/211 (26%), Positives = 82/211 (38%), Gaps = 18/211 (8%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
+E+GNK + A YS+ + N + ++NRSAA G Y+ +D +
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 132 AQTHGYPERLQP---KIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQ 188
L+P K RKA L L R +EA +T + ++ P L + L
Sbjct: 64 TVD------LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
Query: 189 RNLHRLKMKMQEKDSLTESFPA--ALAKTLEDAALREENEQLSNASSSIGLCVDPLKGRC 246
R R M +L + + L D RE EQL N S +G L+
Sbjct: 118 RLAERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLG---TKLQDPR 174
Query: 247 LVATKDILPGELLVQEDAFVSVLNPGELPPP 277
++ T +L G L D + P PPP
Sbjct: 175 IMTTLSVLLGVDLGSMDEEEEIATPPPPPPP 205
Score = 32.0 bits (71), Expect = 2.3
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 66 DAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETC 125
D L + +GN+ FQ+ DY A Y++ + + N +D L ++NR+A L +++
Sbjct: 358 DLALEEKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKL-YSNRAACYTKLLEFQLA 413
Query: 126 LKD 128
LKD
Sbjct: 414 LKD 416
>gi|89179321 smooth muscle cell associated protein-1 isoform 3 [Homo
sapiens]
Length = 929
Score = 44.3 bits (103), Expect = 5e-04
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
R+EGN+ F+ DY GA Y++ + +D ++ H NR+A L Y+ + ++
Sbjct: 10 RKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASK 68
Query: 132 AQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNL 191
A + K + R+++ L LGRL +A + DL+R + P + Q L
Sbjct: 69 AIE---KDGGDVKALYRRSQALEKLGRLDQA---VLDLQRCVSLEPK-----NKVFQEAL 117
Query: 192 HRLKMKMQEKDSLTESFPAALAKTLEDAALREE--NEQLSNASSSI 235
+ ++QEK S A + + + EE E+ AS ++
Sbjct: 118 RNIGGQIQEKVRYMSSTDAKVEQMFQILLDPEEKGTEKKQKASQNL 163
>gi|29725607 smooth muscle cell associated protein-1 isoform 2 [Homo
sapiens]
Length = 944
Score = 44.3 bits (103), Expect = 5e-04
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
R+EGN+ F+ DY GA Y++ + +D ++ H NR+A L Y+ + ++
Sbjct: 25 RKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASK 83
Query: 132 AQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNL 191
A + K + R+++ L LGRL +A + DL+R + P + Q L
Sbjct: 84 AIE---KDGGDVKALYRRSQALEKLGRLDQA---VLDLQRCVSLEPK-----NKVFQEAL 132
Query: 192 HRLKMKMQEKDSLTESFPAALAKTLEDAALREE--NEQLSNASSSI 235
+ ++QEK S A + + + EE E+ AS ++
Sbjct: 133 RNIGGQIQEKVRYMSSTDAKVEQMFQILLDPEEKGTEKKQKASQNL 178
>gi|24308141 small glutamine-rich tetratricopeptide repeat
(TPR)-containing, beta [Homo sapiens]
Length = 304
Score = 42.7 bits (99), Expect = 0.001
Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 28/220 (12%)
Query: 22 SVQVTISTAETLRDIFLHSSSLL--QPEDELFLKRLSKGYLVGKDSDAPLFY------RE 73
S++V I ET+ I + L QP E+F K ++ + P ++
Sbjct: 31 SLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKD 90
Query: 74 EGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINRAQ 133
EGN +E++Y A Y++ + N ++ + NR+AA LG Y +KD +A
Sbjct: 91 EGNNHMKEENYAAAVDCYTQAIELDPNN----AVYYCNRAAAQSKLGHYTDAIKDCEKA- 145
Query: 134 THGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNLHR 193
+ ++ A GR+ A ++ E T+ D+ P + + ++
Sbjct: 146 ------------IAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDP---ENDSYK 190
Query: 194 LKMKMQEKDSLTESFPAALAKTLEDAALREENEQLSNASS 233
+K+ E+ S P + + A+L +S A+S
Sbjct: 191 SNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISMAAS 230
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 42.4 bits (98), Expect = 0.002
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 62 GKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPN----TEDMSLCHANRSAALF 117
G+ ++ P + +GN+ F+ + AA YS ++ P +D+S+ ++NR+A
Sbjct: 439 GQGAENPAGLKSQGNELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYL 498
Query: 118 HLGQYETCLKDINRAQTHGYPERLQPKIMLRKA---ECLVALGRLQEASQTISDLE 170
G C++D NRA +P ++P +LR+A E L G+ +T+ ++
Sbjct: 499 KEGNCSGCIQDCNRA-LELHPFSMKP--LLRRAMAYETLEQYGKAYVDYKTVLQID 551
Score = 33.5 bits (75), Expect = 0.81
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
+E+GN+ F DY A + Y++ +S + P + + NR+ A L + + +D +
Sbjct: 213 KEKGNEAFNSGDYEEAVMYYTRSIS-ALPTV----VAYNNRAQAEIKLQNWNSAFQDCEK 267
Query: 132 AQTHGYPERLQP---KIMLRKAECLVALGRLQEASQTIS 167
L+P K +LR+A +L+EA++ +S
Sbjct: 268 VL------ELEPGNVKALLRRATTYKHQNKLREATEDLS 300
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 42.4 bits (98), Expect = 0.002
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 62 GKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPN----TEDMSLCHANRSAALF 117
G+ ++ P + +GN+ F+ + AA YS ++ P +D+S+ ++NR+A
Sbjct: 439 GQGAENPAGLKSQGNELFRSGQFAEAAGKYSAAIALLEPAGSEIADDLSILYSNRAACYL 498
Query: 118 HLGQYETCLKDINRAQTHGYPERLQPKIMLRKA---ECLVALGRLQEASQTISDLE 170
G C++D NRA +P ++P +LR+A E L G+ +T+ ++
Sbjct: 499 KEGNCSGCIQDCNRA-LELHPFSMKP--LLRRAMAYETLEQYGKAYVDYKTVLQID 551
Score = 33.5 bits (75), Expect = 0.81
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
+E+GN+ F DY A + Y++ +S + P + + NR+ A L + + +D +
Sbjct: 213 KEKGNEAFNSGDYEEAVMYYTRSIS-ALPTV----VAYNNRAQAEIKLQNWNSAFQDCEK 267
Query: 132 AQTHGYPERLQP---KIMLRKAECLVALGRLQEASQTIS 167
L+P K +LR+A +L+EA++ +S
Sbjct: 268 VL------ELEPGNVKALLRRATTYKHQNKLREATEDLS 300
>gi|4507711 tetratricopeptide repeat domain 1 [Homo sapiens]
Length = 292
Score = 38.9 bits (89), Expect = 0.019
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 21/141 (14%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPN--TEDMSLCHANRSAALFHLGQYETCLKDI 129
+EEGN++F++ DY A YS+ + P+ ++ S+ +NR+AA + E + D
Sbjct: 120 KEEGNEQFKKGDYIEAESSYSRALEMC-PSCFQKERSILFSNRAAARMKQDKKEMAINDC 178
Query: 130 NRAQTHGYPERLQP---KIMLRKAECLVALGRLQEASQTISDLERNFTATPALADV---- 182
++A +L P + +LR+AE +L EA + D + P++
Sbjct: 179 SKA------IQLNPSYIRAILRRAELYEKTDKLDEA---LEDYKSILEKDPSIHQAREAC 229
Query: 183 --LPQTLQRNLHRLKMKMQEK 201
LP+ ++ RLK +M K
Sbjct: 230 MRLPKQIEERNERLKEEMLGK 250
>gi|221219053 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform 1
[Homo sapiens]
Length = 494
Score = 38.1 bits (87), Expect = 0.033
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 71 YREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDIN 130
++E+GN + +KDY A Y+K + N + NR+A L LG++ L D
Sbjct: 31 FKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNAS----YYGNRAATLMMLGRFREALGDAQ 86
Query: 131 RAQTHGYPERLQPKIM---LRKAECLVALGRLQEASQT 165
++ RL + LR+ +C ++LG A ++
Sbjct: 87 QS------VRLDDSFVRGHLREGKCHLSLGNAMAACRS 118
Score = 36.2 bits (82), Expect = 0.12
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 26 TISTAETLRDIFLHSSSLLQPEDELFLKRL------SKGYLVGKDSDAPLFYREEGNKKF 79
T + A +R + L+ ++ + F++ L K + +++ A +E+GNK F
Sbjct: 208 TNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAF 267
Query: 80 QEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINRAQTHGYPE 139
+E +Y A LY++ + N + + + NR L + + ++D A +
Sbjct: 268 KEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVK---LD 324
Query: 140 RLQPKIMLRKAECLVALGRLQEA 162
K LR+A+C + + +EA
Sbjct: 325 DTYIKAYLRRAQCYMDTEQYEEA 347
Score = 30.8 bits (68), Expect = 5.2
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 144 KIMLRKAECLVALGRLQEASQTISDLER-NFTATPAL---------ADVLPQTLQRNLHR 193
+ + KAECL LGR EA SD+ R + T AL D + + +Q +
Sbjct: 177 RFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQA 236
Query: 194 LKMKM-QEKDSLTESFPAALAKTLEDA--ALREENEQLSNASSSIGLCVDP 241
L+M EK + AL ED A +E N +L+ + L +DP
Sbjct: 237 LRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDP 287
>gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Homo
sapiens]
Length = 742
Score = 38.1 bits (87), Expect = 0.033
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 296 CHRCLKHTLAT--VPCDGCSYAKYCSQECLQQAW-----ELYHRTECP 336
CH C +H+ PC CS YC + CL+ W ++ HR CP
Sbjct: 313 CHVCHRHSFEAKLTPCPQCSAVLYCGEACLRADWQRCPDDVSHRFWCP 360
>gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo
sapiens]
Length = 703
Score = 38.1 bits (87), Expect = 0.033
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 296 CHRCLKHTLAT--VPCDGCSYAKYCSQECLQQAW-----ELYHRTECP 336
CH C +H+ PC CS YC + CL+ W ++ HR CP
Sbjct: 313 CHVCHRHSFEAKLTPCPQCSAVLYCGEACLRADWQRCPDDVSHRFWCP 360
>gi|90669931 tetratricopeptide repeat domain 12 [Homo sapiens]
Length = 705
Score = 37.7 bits (86), Expect = 0.043
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKD 128
+E+GN+ F E +Y A + YS+G+ +DM + + NR+ A L YE L D
Sbjct: 110 KEKGNEAFAEGNYETAILRYSEGLE----KLKDMKVLYTNRAQAYMKLEDYEKALVD 162
>gi|225735595 RNA polymerase II associated protein 3 isoform 3 [Homo
sapiens]
Length = 506
Score = 37.0 bits (84), Expect = 0.073
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINR 131
++ GN F+E Y A Y++G++ N +L ANR+ A + +YE KD +
Sbjct: 127 KDRGNGFFKEGKYERAIECYTRGIAADGAN----ALLPANRAMAYLKIQKYEEAEKDCTQ 182
Query: 132 AQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNL 191
A + K R+ LG+L EA Q D E P + + L
Sbjct: 183 AI---LLDGSYSKAFARRGTARTFLGKLNEAKQ---DFETVLLLEPGNKQAVTE-----L 231
Query: 192 HRLKMKMQEKDSLTESF 208
++K ++ EK + F
Sbjct: 232 SKIKKELIEKGHWDDVF 248
>gi|21361356 translocase of outer mitochondrial membrane 34 [Homo
sapiens]
Length = 309
Score = 37.0 bits (84), Expect = 0.073
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 72 REEGNKKFQEKDYTGAAVLYSKGV----SHSRPNTEDMSLCHANRSAALFHLGQYETCLK 127
R GN+ F+ Y A+ LY + + + + E+ S+ ++NR+A G C+K
Sbjct: 13 RAAGNESFRNGQYAEASALYGRALRVLQAQGSSDPEEESVLYSNRAACHLKDGNCRDCIK 72
Query: 128 DINRAQTHGYPERLQPKIMLRKAECLVALGRLQEA---SQTISDLERNFTA 175
D A P ++P +LR+A AL + A +T+ ++ N T+
Sbjct: 73 DCTSALAL-VPFSIKP--LLRRASAYEALEKYPMAYVDYKTVLQIDDNVTS 120
>gi|221219056 DnaJ (Hsp40) homolog, subfamily C, member 7 isoform 2
[Homo sapiens]
Length = 438
Score = 36.2 bits (82), Expect = 0.12
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 26 TISTAETLRDIFLHSSSLLQPEDELFLKRL------SKGYLVGKDSDAPLFYREEGNKKF 79
T + A +R + L+ ++ + F++ L K + +++ A +E+GNK F
Sbjct: 152 TNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAF 211
Query: 80 QEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINRAQTHGYPE 139
+E +Y A LY++ + N + + + NR L + + ++D A +
Sbjct: 212 KEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVK---LD 268
Query: 140 RLQPKIMLRKAECLVALGRLQEA 162
K LR+A+C + + +EA
Sbjct: 269 DTYIKAYLRRAQCYMDTEQYEEA 291
Score = 30.8 bits (68), Expect = 5.2
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 144 KIMLRKAECLVALGRLQEASQTISDLER-NFTATPAL---------ADVLPQTLQRNLHR 193
+ + KAECL LGR EA SD+ R + T AL D + + +Q +
Sbjct: 121 RFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQA 180
Query: 194 LKMKM-QEKDSLTESFPAALAKTLEDA--ALREENEQLSNASSSIGLCVDP 241
L+M EK + AL ED A +E N +L+ + L +DP
Sbjct: 181 LRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDP 231
>gi|55953063 SET domain containing 4 isoform c [Homo sapiens]
Length = 307
Score = 36.2 bits (82), Expect = 0.12
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 533 PVISLLNHSCSPNTSVSFISTVAT--IRASQRIRKGQEILHCYGPHKSR 579
P + LLNHS +F + IR + R RK +E+ CYGPH ++
Sbjct: 230 PYLDLLNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQ 278
>gi|8393013 SET domain containing 4 isoform a [Homo sapiens]
Length = 440
Score = 36.2 bits (82), Expect = 0.12
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 533 PVISLLNHSCSPNTSVSFISTVAT--IRASQRIRKGQEILHCYGPHKSR 579
P + LLNHS +F + IR + R RK +E+ CYGPH ++
Sbjct: 230 PYLDLLNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQ 278
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 35.8 bits (81), Expect = 0.16
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 650 LVSRLQDLQQQVRVAQKLLRDGELERAVQRLSGCQRDAESFLWAEHAVVGEIADGLARAC 709
L R+ LQ+QV A ++ G L+ V+RL+G E A V + + LA++
Sbjct: 1682 LQDRVDSLQRQV--ADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSS 1739
Query: 710 AALGDWQKSATHLQRSLYVVE 730
A+L + HLQ++L E
Sbjct: 1740 ASLNSTRDKNLHLQKALTACE 1760
>gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens]
Length = 228
Score = 35.8 bits (81), Expect = 0.16
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 259 LVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYC 318
L +++ F S P E PPP G ++ +G C C L C C A YC
Sbjct: 100 LPRKNDFYSYEPPSENPPPETG--ESVCLQLKSGAHLCRVC--GCLGPKTCSRCHKAYYC 155
Query: 319 SQECLQQAWELYHRTEC 335
S+E W L H+ C
Sbjct: 156 SKEHQTLDWRLGHKQAC 172
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,166,512
Number of Sequences: 37866
Number of extensions: 1450850
Number of successful extensions: 4711
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 4628
Number of HSP's gapped (non-prelim): 132
length of query: 804
length of database: 18,247,518
effective HSP length: 110
effective length of query: 694
effective length of database: 14,082,258
effective search space: 9773087052
effective search space used: 9773087052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.