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Search of human proteins with 156416007
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens] 300 3e-82
gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens] 280 5e-76
gi|8923458 COMM domain containing 8 [Homo sapiens] 38 0.003
gi|6912278 COMM domain containing 3 [Homo sapiens] 38 0.004
gi|124487382 COMM domain containing 5 [Homo sapiens] 37 0.007
gi|154800418 COMM domain containing 5 [Homo sapiens] 37 0.007
gi|19923430 COMM domain containing 5 [Homo sapiens] 37 0.007
gi|45545435 COMM domain containing 2 [Homo sapiens] 37 0.007
gi|169166962 PREDICTED: similar to COMM domain containing 5 [Hom... 34 0.044
gi|169166771 PREDICTED: similar to COMM domain containing 5 [Hom... 34 0.044
gi|169166418 PREDICTED: similar to COMM domain containing 5 [Hom... 34 0.044
gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domai... 33 0.098
gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain... 33 0.098
gi|194306650 SET domain and mariner transposase fusion [Homo sap... 30 0.83
gi|7706663 COMM domain containing 10 [Homo sapiens] 30 1.1
gi|27436978 potassium voltage-gated channel, Isk-related family,... 29 1.8
gi|63047871 hypothetical protein LOC122525 [Homo sapiens] 29 1.8
gi|22749079 MURR1 [Homo sapiens] 28 3.2
gi|223671858 hypothetical protein LOC389761 [Homo sapiens] 27 5.4
gi|112293287 tudor domain containing 7 [Homo sapiens] 27 5.4
gi|223972636 tRNA-intron nuclease 2 isoform 3 [Homo sapiens] 27 7.0
gi|223972632 tRNA-intron nuclease 2 isoform 1 [Homo sapiens] 27 7.0
gi|13376882 tRNA-intron nuclease 2 isoform 1 [Homo sapiens] 27 7.0
gi|229892328 IQ motif containing C isoform 1 [Homo sapiens] 27 7.0
gi|229892326 IQ motif containing C isoform 2 [Homo sapiens] 27 7.0
gi|223972634 tRNA-intron nuclease 2 isoform 2 [Homo sapiens] 27 7.0
gi|150170725 zinc and ring finger 4 [Homo sapiens] 27 7.0
>gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]
Length = 156
Score = 300 bits (768), Expect = 3e-82
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MAALTAEHFAALQSLLKLLQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKII 60
MAALTAEHFAALQSLLKLLQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKII
Sbjct: 1 MAALTAEHFAALQSLLKLLQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKII 60
Query: 61 LEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGD 120
LEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGD
Sbjct: 61 LEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGD 120
Query: 121 KPSISAVTVELSKETLDTMLDGLGRIRDQLSAVASK 156
KPSISAVTVELSKETLDTMLDGLGRIRDQLSAVASK
Sbjct: 121 KPSISAVTVELSKETLDTMLDGLGRIRDQLSAVASK 156
>gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens]
Length = 198
Score = 280 bits (715), Expect = 5e-76
Identities = 156/198 (78%), Positives = 156/198 (78%), Gaps = 42/198 (21%)
Query: 1 MAALTAEHFAALQSLLK------------------------------------------L 18
MAALTAEHFAALQSLLK L
Sbjct: 1 MAALTAEHFAALQSLLKASSKDVVRQLCQESFSSSALGLKKLLDVTCSSLSVTQEEAEEL 60
Query: 19 LQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISL 78
LQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISL
Sbjct: 61 LQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISL 120
Query: 79 PRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKETLDT 138
PRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKETLDT
Sbjct: 121 PRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKETLDT 180
Query: 139 MLDGLGRIRDQLSAVASK 156
MLDGLGRIRDQLSAVASK
Sbjct: 181 MLDGLGRIRDQLSAVASK 198
>gi|8923458 COMM domain containing 8 [Homo sapiens]
Length = 183
Score = 38.1 bits (87), Expect = 0.003
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 76 ISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKET 135
IS +L D DW+V + SSD I+ + +P L + ++E+ + ++E+S+E
Sbjct: 112 ISSAQLQDFDWQVKLALSSDKIAALRMPLLSLHLDVKEN-------GEVKPYSIEMSREE 164
Query: 136 LDTMLDGL 143
L ++ L
Sbjct: 165 LQNLIQSL 172
>gi|6912278 COMM domain containing 3 [Homo sapiens]
Length = 195
Score = 37.7 bits (86), Expect = 0.004
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 77 SLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKETL 136
SLP + D+ WR++ + ++ + RM P L+ + +Q D PS ++ S E L
Sbjct: 121 SLPHITDVSWRLEYQIKTNQLHRMYRPAYLVTLSVQNT-----DSPSYPEISFSCSMEQL 175
Query: 137 DTMLDGLGRIRD 148
D +G+++D
Sbjct: 176 Q---DLVGKLKD 184
>gi|124487382 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 37.0 bits (84), Expect = 0.007
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 71 AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 113
AQ LP + D WRVD+ S+ +++R P+ L+Q+K+ +
Sbjct: 142 AQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
>gi|154800418 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 37.0 bits (84), Expect = 0.007
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 71 AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 113
AQ LP + D WRVD+ S+ +++R P+ L+Q+K+ +
Sbjct: 142 AQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
>gi|19923430 COMM domain containing 5 [Homo sapiens]
Length = 224
Score = 37.0 bits (84), Expect = 0.007
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 71 AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 113
AQ LP + D WRVD+ S+ +++R P+ L+Q+K+ +
Sbjct: 142 AQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
>gi|45545435 COMM domain containing 2 [Homo sapiens]
Length = 199
Score = 37.0 bits (84), Expect = 0.007
Identities = 18/73 (24%), Positives = 39/73 (53%)
Query: 42 ALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMA 101
++F F + L LL ++ L++ RT SLP +L+WR+D++ +S S+ +
Sbjct: 85 SVFVLGFSEELNKLLLQLYLDNRKEIRTILSELAPSLPSYHNLEWRLDVQLASRSLRQQI 144
Query: 102 VPTCLLQMKIQED 114
P +++ + ++
Sbjct: 145 KPAVTIKLHLNQN 157
>gi|169166962 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 34.3 bits (77), Expect = 0.044
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 71 AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 113
AQ LP + D W VD+ S+ +++R P L+Q+K+ +
Sbjct: 191 AQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
>gi|169166771 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 34.3 bits (77), Expect = 0.044
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 71 AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 113
AQ LP + D W VD+ S+ +++R P L+Q+K+ +
Sbjct: 191 AQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
>gi|169166418 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 34.3 bits (77), Expect = 0.044
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 71 AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 113
AQ LP + D W VD+ S+ +++R P L+Q+K+ +
Sbjct: 191 AQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233
>gi|221307473 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform b [Homo sapiens]
Length = 894
Score = 33.1 bits (74), Expect = 0.098
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 5 TAEHFAALQSLLKLLQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKIILEHV 64
TA H+AAL + L+ L + LV + + E L + + H+ + LL
Sbjct: 615 TALHYAALYNQPDCLKLLLKGRALVGTVN-EAGETALDIARKKHHKECEELLE------- 666
Query: 65 STWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQ 112
+AQA + P VD W + + SDS CLL++ Q
Sbjct: 667 -----QAQAGTFAFPLHVDYSWVISTEPGSDSEEDEEEKRCLLKLPAQ 709
>gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform a [Homo sapiens]
Length = 903
Score = 33.1 bits (74), Expect = 0.098
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 5 TAEHFAALQSLLKLLQALHRLTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKIILEHV 64
TA H+AAL + L+ L + LV + + E L + + H+ + LL
Sbjct: 624 TALHYAALYNQPDCLKLLLKGRALVGTVN-EAGETALDIARKKHHKECEELLE------- 675
Query: 65 STWRTEAQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQ 112
+AQA + P VD W + + SDS CLL++ Q
Sbjct: 676 -----QAQAGTFAFPLHVDYSWVISTEPGSDSEEDEEEKRCLLKLPAQ 718
>gi|194306650 SET domain and mariner transposase fusion [Homo
sapiens]
Length = 684
Score = 30.0 bits (66), Expect = 0.83
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 112 QEDPSLCGDKPSISAVTVELSKETLDTMLD 141
+++PS+CG PS+ L+ ET+ MLD
Sbjct: 318 EKEPSMCGSAPSVFPSCKRLTLETMKMMLD 347
>gi|7706663 COMM domain containing 10 [Homo sapiens]
Length = 202
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 64 VSTWRTEAQAN------QISLP-RLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQEDPS 116
V+TW + Q +I P +L + W+++++ + + +++ P +LQ+ + +
Sbjct: 110 VNTWSSMGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNE-- 167
Query: 117 LCGDKPSISAVTVELSKETLDTMLDGLGRIRDQLSAV 153
D S+ V VE S + L + L I+ QL ++
Sbjct: 168 ---DSKSLEKVLVEFSHKELFDFYNKLETIQAQLDSL 201
>gi|27436978 potassium voltage-gated channel, Isk-related family,
member 2 [Homo sapiens]
Length = 123
Score = 28.9 bits (63), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 47 NFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLD 85
NF Q L+++ +I + ++ WR A Q +L VD +
Sbjct: 6 NFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAE 44
>gi|63047871 hypothetical protein LOC122525 [Homo sapiens]
Length = 310
Score = 28.9 bits (63), Expect = 1.8
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 16 LKLLQALHRLTRLVAFRDLSSAEAILALFP---ENFHQNLKNLLTKIILEHVSTWR--TE 70
+KLL ++ + ++ A I+ LF +NF +NL+NL++ I + S WR T
Sbjct: 104 VKLLWIWDKMEKQQYKSEVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTR 163
Query: 71 AQANQ 75
Q +Q
Sbjct: 164 VQEDQ 168
>gi|22749079 MURR1 [Homo sapiens]
Length = 190
Score = 28.1 bits (61), Expect = 3.2
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 84 LDWRVDIKTSSDSISRMAVPTCLLQMKI----QEDPSLCGDKPSISAVTVELSKETLDTM 139
L WRVD K+ S +++ P ++++++ QE LC +E + ++ +
Sbjct: 122 LSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLC----------LEFDEVKVNQI 171
Query: 140 LDGLGRIRDQLSAVASK 156
L L + + +S + S+
Sbjct: 172 LKTLSEVEESISTLISQ 188
>gi|223671858 hypothetical protein LOC389761 [Homo sapiens]
Length = 917
Score = 27.3 bits (59), Expect = 5.4
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 44 FPENFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSSD----SISR 99
FP +FH+ N+L+ +E+V ++ +Q + P+ L D +TSSD S S
Sbjct: 749 FPRSFHERSSNMLS---MENVGNYQ---GCSQETAPKNHLLH---DPETSSDEDLRSNSE 799
Query: 100 MAVPTCLLQMKIQEDPSLCGDKPSISAVTVELSKE 134
+ T ++ + + G K +A+TV LSK+
Sbjct: 800 RDLGTHMMHLSGNDSGVRLGQKQLENALTVHLSKK 834
>gi|112293287 tudor domain containing 7 [Homo sapiens]
Length = 1098
Score = 27.3 bits (59), Expect = 5.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 46 ENFHQNLKNLLTKIILEHVSTWRTE 70
ENF +NL +++ K +++H S + TE
Sbjct: 875 ENFRKNLTDVIKKSMVDHTSAFSTE 899
>gi|223972636 tRNA-intron nuclease 2 isoform 3 [Homo sapiens]
Length = 406
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 35 SSAEAILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSS 94
+S I+ L ++F +L+ L+ W++ A +++S+ +L IK S+
Sbjct: 319 ASYSVIIELVDDHFEGSLRRPLS---------WKSLAALSRVSVNVSKELMLCYLIKPST 369
Query: 95 DSISRMAVPTCLLQMKIQE 113
+ M P C+ ++K+QE
Sbjct: 370 MTDKEMESPECMKRIKVQE 388
>gi|223972632 tRNA-intron nuclease 2 isoform 1 [Homo sapiens]
Length = 465
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 35 SSAEAILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSS 94
+S I+ L ++F +L+ L+ W++ A +++S+ +L IK S+
Sbjct: 378 ASYSVIIELVDDHFEGSLRRPLS---------WKSLAALSRVSVNVSKELMLCYLIKPST 428
Query: 95 DSISRMAVPTCLLQMKIQE 113
+ M P C+ ++K+QE
Sbjct: 429 MTDKEMESPECMKRIKVQE 447
>gi|13376882 tRNA-intron nuclease 2 isoform 1 [Homo sapiens]
Length = 465
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 35 SSAEAILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSS 94
+S I+ L ++F +L+ L+ W++ A +++S+ +L IK S+
Sbjct: 378 ASYSVIIELVDDHFEGSLRRPLS---------WKSLAALSRVSVNVSKELMLCYLIKPST 428
Query: 95 DSISRMAVPTCLLQMKIQE 113
+ M P C+ ++K+QE
Sbjct: 429 MTDKEMESPECMKRIKVQE 447
>gi|229892328 IQ motif containing C isoform 1 [Homo sapiens]
Length = 546
Score = 26.9 bits (58), Expect = 7.0
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 104 TCLLQMKIQEDPSLCGDKP 122
TCLLQMKI ED + G KP
Sbjct: 392 TCLLQMKILEDQTPRGLKP 410
>gi|229892326 IQ motif containing C isoform 2 [Homo sapiens]
Length = 466
Score = 26.9 bits (58), Expect = 7.0
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 104 TCLLQMKIQEDPSLCGDKP 122
TCLLQMKI ED + G KP
Sbjct: 312 TCLLQMKILEDQTPRGLKP 330
>gi|223972634 tRNA-intron nuclease 2 isoform 2 [Homo sapiens]
Length = 439
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 35 SSAEAILALFPENFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLDWRVDIKTSS 94
+S I+ L ++F +L+ L+ W++ A +++S+ +L IK S+
Sbjct: 352 ASYSVIIELVDDHFEGSLRRPLS---------WKSLAALSRVSVNVSKELMLCYLIKPST 402
Query: 95 DSISRMAVPTCLLQMKIQE 113
+ M P C+ ++K+QE
Sbjct: 403 MTDKEMESPECMKRIKVQE 421
>gi|150170725 zinc and ring finger 4 [Homo sapiens]
Length = 429
Score = 26.9 bits (58), Expect = 7.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 113 EDPSLCGDKPSISAVTVELSKETLDTM 139
EDPSL G +P I A+ V+L L+ +
Sbjct: 372 EDPSLPGHRPPIWAIQVQLRSRRLELL 398
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,554,359
Number of Sequences: 37866
Number of extensions: 155934
Number of successful extensions: 418
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 31
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.