Guide to the Human Genome
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Search of human proteins with 156416003

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|156416003 succinate dehydrogenase complex, subunit A,
flavoprotein precursor [Homo sapiens]
         (664 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|156416003 succinate dehydrogenase complex, subunit A, flavopr...  1357   0.0  
gi|169165769 PREDICTED: similar to succinate dehydrogenase compl...   211   2e-54
gi|229577391 pyridine nucleotide-disulphide oxidoreductase domai...    33   0.84 
gi|33519426 thioredoxin reductase 1 isoform 2 [Homo sapiens]           33   0.84 
gi|148277071 thioredoxin reductase 1 isoform 3 [Homo sapiens]          33   0.84 
gi|148277065 thioredoxin reductase 1 isoform 1 [Homo sapiens]          33   0.84 
gi|33519430 thioredoxin reductase 1 isoform 2 [Homo sapiens]           33   0.84 
gi|33519428 thioredoxin reductase 1 isoform 2 [Homo sapiens]           33   0.84 
gi|154816208 phosphotyrosine interaction domain containing 1 iso...    32   1.4  
gi|40255260 phosphotyrosine interaction domain containing 1 isof...    32   1.4  
gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo sapi...    32   1.9  
gi|57165412 acyl-CoA synthetase long-chain family member 6 isofo...    32   2.5  
gi|57165410 acyl-CoA synthetase long-chain family member 6 isofo...    32   2.5  
gi|169790958 methionine synthase reductase isoform 1 [Homo sapiens]    31   3.2  
gi|169790956 methionine synthase reductase isoform 2 [Homo sapiens]    31   3.2  
gi|183227703 mitochondrial translation optimization 1 homolog is...    31   4.2  
gi|19882217 mitochondrial translation optimization 1 homolog iso...    31   4.2  
gi|74024895 mitochondrial translation optimization 1 homolog iso...    31   4.2  
gi|91199540 dihydrolipoamide dehydrogenase precursor [Homo sapiens]    30   7.1  

>gi|156416003 succinate dehydrogenase complex, subunit A,
           flavoprotein precursor [Homo sapiens]
          Length = 664

 Score = 1357 bits (3511), Expect = 0.0
 Identities = 664/664 (100%), Positives = 664/664 (100%)

Query: 1   MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH 60
           MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH
Sbjct: 1   MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH 60

Query: 61  EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 120
           EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
Sbjct: 61  EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 120

Query: 121 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 180
           WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
Sbjct: 121 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 180

Query: 181 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE 240
           GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
Sbjct: 181 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE 240

Query: 241 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI 300
           DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI
Sbjct: 241 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI 300

Query: 301 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE 360
           YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
Sbjct: 301 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE 360

Query: 361 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ 420
           KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
Sbjct: 361 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ 420

Query: 421 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK 480
           VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK
Sbjct: 421 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK 480

Query: 481 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS 540
           VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS
Sbjct: 481 VPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKIS 540

Query: 541 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR 600
           KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR
Sbjct: 541 KLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVR 600

Query: 601 IDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPA 660
           IDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPA
Sbjct: 601 IDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPA 660

Query: 661 IRSY 664
           IRSY
Sbjct: 661 IRSY 664


>gi|169165769 PREDICTED: similar to succinate dehydrogenase complex,
           subunit A, flavoprotein (Fp) [Homo sapiens]
          Length = 109

 Score =  211 bits (536), Expect = 2e-54
 Identities = 100/109 (91%), Positives = 104/109 (95%)

Query: 556 MVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRIDEYDYSKPIQGQQK 615
           MVWNTDLVETLELQNLMLCALQT+ GAEA KESRGAHA EDYKVRIDEYD+SKPIQGQQK
Sbjct: 1   MVWNTDLVETLELQNLMLCALQTVNGAEAGKESRGAHAGEDYKVRIDEYDHSKPIQGQQK 60

Query: 616 KPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664
           KPFEEHWRKHTLSYVDV TGKVT+EYRP+IDKTLNEADCATVPPAI SY
Sbjct: 61  KPFEEHWRKHTLSYVDVSTGKVTVEYRPIIDKTLNEADCATVPPAIHSY 109


>gi|229577391 pyridine nucleotide-disulphide oxidoreductase domain
          2 [Homo sapiens]
          Length = 581

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 17/28 (60%), Positives = 19/28 (67%)

Query: 61 EFDAVVVGAGGAGLRAAFGLSEAGFNTA 88
          E+DAVV+GAG  GL AA  L   G NTA
Sbjct: 34 EYDAVVIGAGHNGLVAAAYLQRLGVNTA 61


>gi|33519426 thioredoxin reductase 1 isoform 2 [Homo sapiens]
          Length = 499

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 25/131 (19%)

Query: 60  HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGG--IN--------- 108
           +++D +++G G  GL AA   ++ G     +  + PT   T    GG  +N         
Sbjct: 11  YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLM 70

Query: 109 ---AALGNMEED--NWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRT 163
              A LG   +D  N+ W   +TVK  DW         M E     +  L N+G   +  
Sbjct: 71  HQAALLGQALQDSRNYGWKVEETVK-HDW-------DRMIEAVQNHIGSL-NWGYRVALR 121

Query: 164 EDGKIYQRAFG 174
           E   +Y+ A+G
Sbjct: 122 EKKVVYENAYG 132


>gi|148277071 thioredoxin reductase 1 isoform 3 [Homo sapiens]
          Length = 649

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 25/131 (19%)

Query: 60  HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGG--IN--------- 108
           +++D +++G G  GL AA   ++ G     +  + PT   T    GG  +N         
Sbjct: 161 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLM 220

Query: 109 ---AALGNMEED--NWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRT 163
              A LG   +D  N+ W   +TVK  DW         M E     +  L N+G   +  
Sbjct: 221 HQAALLGQALQDSRNYGWKVEETVK-HDW-------DRMIEAVQNHIGSL-NWGYRVALR 271

Query: 164 EDGKIYQRAFG 174
           E   +Y+ A+G
Sbjct: 272 EKKVVYENAYG 282


>gi|148277065 thioredoxin reductase 1 isoform 1 [Homo sapiens]
          Length = 551

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 25/131 (19%)

Query: 60  HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGG--IN--------- 108
           +++D +++G G  GL AA   ++ G     +  + PT   T    GG  +N         
Sbjct: 63  YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLM 122

Query: 109 ---AALGNMEED--NWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRT 163
              A LG   +D  N+ W   +TVK  DW         M E     +  L N+G   +  
Sbjct: 123 HQAALLGQALQDSRNYGWKVEETVK-HDW-------DRMIEAVQNHIGSL-NWGYRVALR 173

Query: 164 EDGKIYQRAFG 174
           E   +Y+ A+G
Sbjct: 174 EKKVVYENAYG 184


>gi|33519430 thioredoxin reductase 1 isoform 2 [Homo sapiens]
          Length = 499

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 25/131 (19%)

Query: 60  HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGG--IN--------- 108
           +++D +++G G  GL AA   ++ G     +  + PT   T    GG  +N         
Sbjct: 11  YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLM 70

Query: 109 ---AALGNMEED--NWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRT 163
              A LG   +D  N+ W   +TVK  DW         M E     +  L N+G   +  
Sbjct: 71  HQAALLGQALQDSRNYGWKVEETVK-HDW-------DRMIEAVQNHIGSL-NWGYRVALR 121

Query: 164 EDGKIYQRAFG 174
           E   +Y+ A+G
Sbjct: 122 EKKVVYENAYG 132


>gi|33519428 thioredoxin reductase 1 isoform 2 [Homo sapiens]
          Length = 499

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 25/131 (19%)

Query: 60  HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGG--IN--------- 108
           +++D +++G G  GL AA   ++ G     +  + PT   T    GG  +N         
Sbjct: 11  YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLM 70

Query: 109 ---AALGNMEED--NWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRT 163
              A LG   +D  N+ W   +TVK  DW         M E     +  L N+G   +  
Sbjct: 71  HQAALLGQALQDSRNYGWKVEETVK-HDW-------DRMIEAVQNHIGSL-NWGYRVALR 121

Query: 164 EDGKIYQRAFG 174
           E   +Y+ A+G
Sbjct: 122 EKKVVYENAYG 132


>gi|154816208 phosphotyrosine interaction domain containing 1
           isoform 2 [Homo sapiens]
          Length = 217

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 610 IQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRP 643
           + G  +KP  E W+KHTL+  DV      LE RP
Sbjct: 74  LSGCTEKPVIELWKKHTLAREDVFPANALLEIRP 107


>gi|40255260 phosphotyrosine interaction domain containing 1 isoform
           1 [Homo sapiens]
          Length = 248

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 610 IQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRP 643
           + G  +KP  E W+KHTL+  DV      LE RP
Sbjct: 105 LSGCTEKPVIELWKKHTLAREDVFPANALLEIRP 138


>gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo
           sapiens]
          Length = 862

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 33/199 (16%)

Query: 464 GRACALSIEESCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHA 523
           GR   +   E     D+  P+ P   E  V N+ ++ + D   RT+  +    +S++N+ 
Sbjct: 299 GRVYYVDHVEKRTTWDRPEPLPPG-WERRVDNMGRIYYVDHFTRTTTWQRPTLESVRNY- 356

Query: 524 AVFRVGSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNL-MLCALQTIYGA 582
                    ++   + S+L G ++      R +  N DL  T + +    L  L    G 
Sbjct: 357 ---------EQWQLQRSQLQGAMQQFN--QRFIYGNQDLFATSQSKEFDPLGPLPP--GW 403

Query: 583 EARKESRGAHAREDYKVRIDEYDYSKPIQGQ-QKKPFEEHWR---------------KHT 626
           E R +S G     ++  RI +++  +  QGQ  +KP  E W                + T
Sbjct: 404 EKRTDSNGRVYFVNHNTRITQWEDPRS-QGQLNEKPLPEGWEMRFTVDGIPYFVDHNRRT 462

Query: 627 LSYVDVGTGKVTLEYRPVI 645
            +Y+D  TGK  L+  P I
Sbjct: 463 TTYIDPRTGKSALDNGPQI 481


>gi|57165412 acyl-CoA synthetase long-chain family member 6 isoform
           b [Homo sapiens]
          Length = 722

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 258 GYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGI 317
           GYG+T  +     T+ GD T+    A LPC  ++ V       +         C+GEG I
Sbjct: 482 GYGQTECTAGCTFTTPGDWTSGHVGAPLPCNHIKLVDVEELNYW--------ACKGEGEI 533

Query: 318 LI 319
            +
Sbjct: 534 CV 535


>gi|57165410 acyl-CoA synthetase long-chain family member 6 isoform
           a [Homo sapiens]
          Length = 722

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 258 GYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGI 317
           GYG+T  +     T+ GD T+    A LPC  ++ V       +         C+GEG I
Sbjct: 482 GYGQTECTAGCTFTTPGDWTSGHVGAPLPCNHIKLVDVEELNYW--------ACKGEGEI 533

Query: 318 LI 319
            +
Sbjct: 534 CV 535


>gi|169790958 methionine synthase reductase isoform 1 [Homo sapiens]
          Length = 698

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 23/104 (22%), Positives = 41/104 (39%)

Query: 400 IPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLD 459
           +P L     N+ G+P  Y    L+   GQ++    + +        +  A +L  N  + 
Sbjct: 232 VPPLSQASLNIPGLPPEYLQVHLQESLGQEESQVSVTSADPVFQVPISKAVQLTTNDAIK 291

Query: 460 LVVFGRACALSIEESCRPGDKVPPIKPNAGEESVMNLDKLRFAD 503
             +       + + S +PGD    I PN+  E    L +L+  D
Sbjct: 292 TTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLED 335


>gi|169790956 methionine synthase reductase isoform 2 [Homo sapiens]
          Length = 725

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 23/104 (22%), Positives = 41/104 (39%)

Query: 400 IPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLD 459
           +P L     N+ G+P  Y    L+   GQ++    + +        +  A +L  N  + 
Sbjct: 259 VPPLSQASLNIPGLPPEYLQVHLQESLGQEESQVSVTSADPVFQVPISKAVQLTTNDAIK 318

Query: 460 LVVFGRACALSIEESCRPGDKVPPIKPNAGEESVMNLDKLRFAD 503
             +       + + S +PGD    I PN+  E    L +L+  D
Sbjct: 319 TTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLED 362


>gi|183227703 mitochondrial translation optimization 1 homolog
           isoform c [Homo sapiens]
          Length = 732

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 17/98 (17%)

Query: 48  SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGI 107
           SDS + + P     FD +V+G G AG  AA   +  G  T  +T    T       Q   
Sbjct: 27  SDSAAPRTP----HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDT-----IGQMSC 77

Query: 108 NAALGNMEEDNWRWHFYDTVKGSDWL----GDQDAIHY 141
           N + G +     + H    V   D L     DQ  +HY
Sbjct: 78  NPSFGGI----GKGHLMREVDALDGLCSRICDQSGVHY 111


>gi|19882217 mitochondrial translation optimization 1 homolog
           isoform b [Homo sapiens]
          Length = 717

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 17/98 (17%)

Query: 48  SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGI 107
           SDS + + P     FD +V+G G AG  AA   +  G  T  +T    T       Q   
Sbjct: 27  SDSAAPRTP----HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDT-----IGQMSC 77

Query: 108 NAALGNMEEDNWRWHFYDTVKGSDWL----GDQDAIHY 141
           N + G +     + H    V   D L     DQ  +HY
Sbjct: 78  NPSFGGI----GKGHLMREVDALDGLCSRICDQSGVHY 111


>gi|74024895 mitochondrial translation optimization 1 homolog
           isoform a [Homo sapiens]
          Length = 692

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 17/98 (17%)

Query: 48  SDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGI 107
           SDS + + P     FD +V+G G AG  AA   +  G  T  +T    T       Q   
Sbjct: 27  SDSAAPRTP----HFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDT-----IGQMSC 77

Query: 108 NAALGNMEEDNWRWHFYDTVKGSDWL----GDQDAIHY 141
           N + G +     + H    V   D L     DQ  +HY
Sbjct: 78  NPSFGGI----GKGHLMREVDALDGLCSRICDQSGVHY 111


>gi|91199540 dihydrolipoamide dehydrogenase precursor [Homo
          sapiens]
          Length = 509

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 63 DAVVVGAGGAGLRAAFGLSEAGFNTACVTK 92
          D  V+G+G  G  AA   ++ GF T C+ K
Sbjct: 43 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEK 72


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,821,099
Number of Sequences: 37866
Number of extensions: 1193382
Number of successful extensions: 2444
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2435
Number of HSP's gapped (non-prelim): 19
length of query: 664
length of database: 18,247,518
effective HSP length: 109
effective length of query: 555
effective length of database: 14,120,124
effective search space: 7836668820
effective search space used: 7836668820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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