Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CTNND1 Sequence: fasta or formatted (962aa) NCBI GI: 146231962
Description:

catenin, delta 1 isoform 1AB

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [941aa] catenin, delta 1 isoform 1B
alt prot [933aa] catenin, delta 1 isoform 1A
alt prot [968aa] catenin, delta 1 isoform 1ABC
alt prot [933aa] catenin, delta 1 isoform 1A
alt prot [840aa] catenin, delta 1 isoform 3B
alt prot [832aa] catenin, delta 1 isoform 3A
alt prot [933aa] catenin, delta 1 isoform 1A
alt prot [867aa] catenin, delta 1 isoform 3ABC
alt prot [832aa] catenin, delta 1 isoform 3A
alt prot [838aa] catenin, delta 1 isoform 3AC
alt prot [861aa] catenin, delta 1 isoform 3AB
alt prot [832aa] catenin, delta 1 isoform 3A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         65           3
 C cysteine            1.0         10           1
 D aspartate           6.9         66           2
 E glutamate           7.9         76           3
 F phenylalanine       1.5         14           1
 G glycine             7.3         70           2
 H histidine           2.4         23           1
 I isoleucine          4.2         40           2
 K lysine              5.6         54           2
 L leucine             9.0         87           2
 M methionine          1.9         18           2
 N asparagine          5.1         49           2
 P proline             5.7         55           4
 Q glutamine           4.3         41           2
 R arginine            7.5         72           3
 S serine              7.7         74           2
 T threonine           4.9         47           2
 V valine              6.3         61           2
 W tryptophan          0.9          9           1
 Y tyrosine            3.2         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   catenin, delta 1 isoform 1AB 
CTNND1                0.996   catenin, delta 1 isoform 1ABC 
CTNND1                0.972   catenin, delta 1 isoform 1B 
CTNND1                0.969   catenin, delta 1 isoform 1A 
CTNND1                0.969   catenin, delta 1 isoform 1A 
CTNND1                0.969   catenin, delta 1 isoform 1A 
CTNND1                0.897   catenin, delta 1 isoform 3AB 
CTNND1                0.894   catenin, delta 1 isoform 3ABC 
CTNND1                0.869   catenin, delta 1 isoform 3B 
CTNND1                0.866   catenin, delta 1 isoform 3A 
CTNND1                0.866   catenin, delta 1 isoform 3A 
CTNND1                0.866   catenin, delta 1 isoform 3A 
CTNND1                0.862   catenin, delta 1 isoform 3AC 
ARVCF                 0.387   armadillo repeat protein 
CTNND2                0.235   catenin (cadherin-associated protein), delta 2 (neur...
PKP4                  0.218   plakophilin 4 isoform b 
PKP4                  0.218   plakophilin 4 isoform a 
PKP2                  0.124   plakophilin 2 isoform 2a 
PKP3                  0.113   plakophilin 3 
PKP2                  0.113   plakophilin 2 isoform 2b 
PKP1                  0.107   plakophilin 1 isoform 1a 
LOC652798             0.107   PREDICTED: similar to plakophilin 1, partial 
PKP1                  0.101   plakophilin 1 isoform 1b 
ARMC4                 0.014   armadillo repeat containing 4 
CTNNB1                0.012   catenin (cadherin-associated protein), beta 1, 88kD...
CTNNB1                0.012   catenin (cadherin-associated protein), beta 1, 88kD...
CTNNB1                0.012   catenin (cadherin-associated protein), beta 1, 88kDa ...
APC2                  0.010   adenomatosis polyposis coli 2 
SS18                  0.009   synovial sarcoma translocation, chromosome 18 isofor...
ANKAR                 0.009   ankyrin and armadillo repeat containing 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press