Guide to the Human Genome
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Name: CTNND1 Sequence: fasta or formatted (933aa) NCBI GI: 146231942
Description:

catenin, delta 1 isoform 1A

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [941aa] catenin, delta 1 isoform 1B
alt mRNA [933aa] catenin, delta 1 isoform 1A
alt prot [968aa] catenin, delta 1 isoform 1ABC
alt prot [840aa] catenin, delta 1 isoform 3B
alt prot [832aa] catenin, delta 1 isoform 3A
alt prot [962aa] catenin, delta 1 isoform 1AB
alt mRNA [933aa] catenin, delta 1 isoform 1A
alt prot [867aa] catenin, delta 1 isoform 3ABC
alt prot [832aa] catenin, delta 1 isoform 3A
alt prot [838aa] catenin, delta 1 isoform 3AC
alt prot [861aa] catenin, delta 1 isoform 3AB
alt prot [832aa] catenin, delta 1 isoform 3A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         65           3
 C cysteine            1.1         10           1
 D aspartate           6.6         62           2
 E glutamate           7.5         70           3
 F phenylalanine       1.5         14           1
 G glycine             7.2         67           2
 H histidine           2.5         23           1
 I isoleucine          4.3         40           2
 K lysine              5.8         54           2
 L leucine             8.9         83           2
 M methionine          1.8         17           2
 N asparagine          5.3         49           2
 P proline             5.8         54           4
 Q glutamine           4.1         38           2
 R arginine            7.7         72           3
 S serine              7.6         71           2
 T threonine           5.0         47           2
 V valine              6.2         58           2
 W tryptophan          1.0          9           1
 Y tyrosine            3.2         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   catenin, delta 1 isoform 1A 
CTNND1                1.000   catenin, delta 1 isoform 1A 
CTNND1                1.000   catenin, delta 1 isoform 1A 
CTNND1                0.998   catenin, delta 1 isoform 1AB 
CTNND1                0.995   catenin, delta 1 isoform 1ABC 
CTNND1                0.969   catenin, delta 1 isoform 1B 
CTNND1                0.894   catenin, delta 1 isoform 3A 
CTNND1                0.894   catenin, delta 1 isoform 3A 
CTNND1                0.894   catenin, delta 1 isoform 3A 
CTNND1                0.893   catenin, delta 1 isoform 3AB 
CTNND1                0.891   catenin, delta 1 isoform 3AC 
CTNND1                0.889   catenin, delta 1 isoform 3ABC 
CTNND1                0.864   catenin, delta 1 isoform 3B 
ARVCF                 0.399   armadillo repeat protein 
CTNND2                0.243   catenin (cadherin-associated protein), delta 2 (neur...
PKP4                  0.225   plakophilin 4 isoform b 
PKP4                  0.225   plakophilin 4 isoform a 
PKP2                  0.128   plakophilin 2 isoform 2a 
PKP3                  0.117   plakophilin 3 
PKP2                  0.117   plakophilin 2 isoform 2b 
PKP1                  0.111   plakophilin 1 isoform 1a 
LOC652798             0.111   PREDICTED: similar to plakophilin 1, partial 
PKP1                  0.104   plakophilin 1 isoform 1b 
ARMC4                 0.015   armadillo repeat containing 4 
CTNNB1                0.012   catenin (cadherin-associated protein), beta 1, 88kD...
CTNNB1                0.012   catenin (cadherin-associated protein), beta 1, 88kD...
CTNNB1                0.012   catenin (cadherin-associated protein), beta 1, 88kDa ...
APC2                  0.011   adenomatosis polyposis coli 2 
SS18                  0.009   synovial sarcoma translocation, chromosome 18 isofor...
ANKAR                 0.009   ankyrin and armadillo repeat containing 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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