Search of human proteins with 155030240

Search of human proteins with 155030240

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|155030240 tRNA nucleotidyl transferase, CCA-adding, 1 [Homo
sapiens]
         (434 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|155030240 tRNA nucleotidyl transferase, CCA-adding, 1 [Homo s...   879   0.0  
gi|4505531 oxysterol binding protein [Homo sapiens]                    34   0.23 
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]           32   1.1  
gi|22550104 ubiquitin specific protease 32 [Homo sapiens]              32   1.1  
gi|20357504 dystonin isoform 1eB precursor [Homo sapiens]              32   1.5  
gi|44680154 myotubularin-related protein 2 isoform 1 [Homo sapiens]    30   5.6  
gi|41350318 myotubularin-related protein 2 isoform 2 [Homo sapiens]    30   5.6  
gi|41350316 myotubularin-related protein 2 isoform 2 [Homo sapiens]    30   5.6  
gi|134152674 rabaptin, RAB GTPase binding effector protein 1 iso...    30   5.6  
gi|31377798 rabaptin, RAB GTPase binding effector protein 1 isof...    30   5.6  
gi|40385883 ribulose-5-phosphate-3-epimerase isoform 1 [Homo sap...    29   9.5  
gi|63253298 spermidine synthase [Homo sapiens]                         29   9.5  
gi|25777600 proteasome 26S non-ATPase subunit 1 [Homo sapiens]         29   9.5  
gi|34577118 dopey family member 1 [Homo sapiens]                       29   9.5  

>gi|155030240 tRNA nucleotidyl transferase, CCA-adding, 1 [Homo
           sapiens]
          Length = 434

 Score =  879 bits (2271), Expect = 0.0
 Identities = 434/434 (100%), Positives = 434/434 (100%)

Query: 1   MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR 60
           MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
Sbjct: 1   MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR 60

Query: 61  IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120
           IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
Sbjct: 61  IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 120

Query: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180
           EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
Sbjct: 121 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK 180

Query: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240
           VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
Sbjct: 181 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV 240

Query: 241 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF 300
           ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
Sbjct: 241 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF 300

Query: 301 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT 360
           KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
Sbjct: 301 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT 360

Query: 361 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY 420
           RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
Sbjct: 361 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY 420

Query: 421 QMEKDELLSYIKKT 434
           QMEKDELLSYIKKT
Sbjct: 421 QMEKDELLSYIKKT 434


>gi|4505531 oxysterol binding protein [Homo sapiens]
          Length = 807

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 328 KNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPP 385
           K   + +KAT+   P  PY+    + ++   T  +  +  Y+GE+   KE Q WS  P
Sbjct: 749 KREAEAMKATEDGTPYDPYKALWFERKKDPVTKELTHI--YRGEYWECKEKQDWSSCP 804


>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
          Length = 858

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 354 REPDATTRVCELLKYQGEHCLLKEMQQWSIPP 385
           R  DA  R C L  Y G+HC ++E+    +PP
Sbjct: 95  RLKDAFKRTCGLSYYMGQHCFIREVLGDGVPP 126


>gi|22550104 ubiquitin specific protease 32 [Homo sapiens]
          Length = 1604

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 354 REPDATTRVCELLKYQGEHCLLKEMQQWSIPP 385
           R  DA  R C L  Y G+HC ++E+    +PP
Sbjct: 27  RLKDAFKRTCGLSYYMGQHCFIREVLGDGVPP 58


>gi|20357504 dystonin isoform 1eB precursor [Homo sapiens]
          Length = 3062

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 37/232 (15%)

Query: 31   KLQSPEFQSLFTEGLKSLTELFVKENH----ELRIAGGA------VRDLLNGVKPQDIDF 80
            ++Q PE   +F E +K + +  +KE H    E+            +++L+  +    +  
Sbjct: 2804 EVQIPELSQVFVEDVKDILKSRLKEGHMNPQEVEEPSACADTKILIQNLIKRITTSQLVN 2863

Query: 81   ATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLR----IDVTTDGRHA 136
              +  P+   +M  S+G+  + N  E    +     ++ F I  L+    +++    +H+
Sbjct: 2864 EASTVPSD-SQMSDSSGVSPMTNSSE----LKPESRDDPFCIGNLKSELLLNILKQDQHS 2918

Query: 137  E--------VEFTTDWQKDAERRDLTINSMFLGFDGTLFDYF-NGYEDLKNKKVRFVGHA 187
            +        +   T  + D E+R +T   + L  +   +    +GY    ++K+  VG  
Sbjct: 2919 QKITGVFELMRELTHMEYDLEKRGITSKVLPLQLENIFYKLLADGY----SEKIEHVGDF 2974

Query: 188  KQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIW 239
             Q+       +       G I  K G++    LE + E      G+    +W
Sbjct: 2975 NQKACSTSEMMEEKPHILGDIKSKEGNYYSPNLETVKE-----IGLESSTVW 3021


>gi|44680154 myotubularin-related protein 2 isoform 1 [Homo sapiens]
          Length = 643

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 191 IQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNH 250
           I ++ L+ +  FR  GRI      H PE+   I   ++ + G+SG+R   + K +     
Sbjct: 250 IPDEELKRVASFRSRGRIPVLSWIH-PESQATITRCSQPMVGVSGKRSKEDEKYLQAIMD 308

Query: 251 VNHLIHLIYDLDVAPYIGLPAN 272
            N   H I+  D  P +   AN
Sbjct: 309 SNAQSHKIFIFDARPSVNAVAN 330


>gi|41350318 myotubularin-related protein 2 isoform 2 [Homo sapiens]
          Length = 571

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 191 IQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNH 250
           I ++ L+ +  FR  GRI      H PE+   I   ++ + G+SG+R   + K +     
Sbjct: 178 IPDEELKRVASFRSRGRIPVLSWIH-PESQATITRCSQPMVGVSGKRSKEDEKYLQAIMD 236

Query: 251 VNHLIHLIYDLDVAPYIGLPAN 272
            N   H I+  D  P +   AN
Sbjct: 237 SNAQSHKIFIFDARPSVNAVAN 258


>gi|41350316 myotubularin-related protein 2 isoform 2 [Homo sapiens]
          Length = 571

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 191 IQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNH 250
           I ++ L+ +  FR  GRI      H PE+   I   ++ + G+SG+R   + K +     
Sbjct: 178 IPDEELKRVASFRSRGRIPVLSWIH-PESQATITRCSQPMVGVSGKRSKEDEKYLQAIMD 236

Query: 251 VNHLIHLIYDLDVAPYIGLPAN 272
            N   H I+  D  P +   AN
Sbjct: 237 SNAQSHKIFIFDARPSVNAVAN 258


>gi|134152674 rabaptin, RAB GTPase binding effector protein 1
           isoform 2 [Homo sapiens]
          Length = 829

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 36/129 (27%)

Query: 301 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT 360
           + +D V KL L L+ A ++      + K  KD           +  +DFI  S E  +  
Sbjct: 552 ETRDQVKKLQLMLRQANDQ------LEKTMKDK----------QELEDFIKQSSEDSSHQ 595

Query: 361 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGK----EIGALLQQLREQWK 416
               +L+ Q    LL+E+QQ                G+S  K    E  A+L Q REQ  
Sbjct: 596 ISALVLRAQASEILLEELQQ----------------GLSQAKRDVQEQMAVLMQSREQVS 639

Query: 417 KSGYQMEKD 425
           +   +++KD
Sbjct: 640 EELVRLQKD 648


>gi|31377798 rabaptin, RAB GTPase binding effector protein 1 isoform
           1 [Homo sapiens]
          Length = 862

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 36/129 (27%)

Query: 301 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT 360
           + +D V KL L L+ A ++      + K  KD           +  +DFI  S E  +  
Sbjct: 552 ETRDQVKKLQLMLRQANDQ------LEKTMKDK----------QELEDFIKQSSEDSSHQ 595

Query: 361 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGK----EIGALLQQLREQWK 416
               +L+ Q    LL+E+QQ                G+S  K    E  A+L Q REQ  
Sbjct: 596 ISALVLRAQASEILLEELQQ----------------GLSQAKRDVQEQMAVLMQSREQVS 639

Query: 417 KSGYQMEKD 425
           +   +++KD
Sbjct: 640 EELVRLQKD 648


>gi|40385883 ribulose-5-phosphate-3-epimerase isoform 1 [Homo
           sapiens]
          Length = 228

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 372 HCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYI 431
           H ++ + +QW + P  V+G +     + + +  GAL++ +RE   K G  ++    + Y+
Sbjct: 70  HMMVSKPEQW-VKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYL 128


>gi|63253298 spermidine synthase [Homo sapiens]
          Length = 302

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 323 GLFIVKNRKDLIKA--TDSSDPLKPYQDFIIDSREPDATTRVCE--LLKYQGEHC----- 373
           G   +K  +D      TDSSDP+ P +    +S      T + E  +L  QGE C     
Sbjct: 156 GFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE-CQWLHL 214

Query: 374 -LLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALL 408
            L+KEM+Q+    FPV  +    +      +IG +L
Sbjct: 215 DLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFML 250


>gi|25777600 proteasome 26S non-ATPase subunit 1 [Homo sapiens]
          Length = 953

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 274 SLEEFDKVSKNVDG----FSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKN 329
           S+E  +K S    G     SP+P      + K+      ++L L+      N  L I+KN
Sbjct: 296 SMETEEKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKN 355

Query: 330 RKDLIK 335
            KD ++
Sbjct: 356 TKDAVR 361


>gi|34577118 dopey family member 1 [Homo sapiens]
          Length = 2465

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 24/151 (15%)

Query: 272  NASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGL-FIVKNR 330
            N S +EFD  S           TL + L KV   +  L+ R+    EE   G  F+V + 
Sbjct: 1566 NFSEDEFDNGS-----------TLQSQLLKVLQRLIVLEHRVMTIPEENETGFDFVVSDL 1614

Query: 331  KDLIKATDSSDPLKPYQDFIIDSREPDATTRV--CELLKYQGEHCLLKEMQQW---SIPP 385
            + +        P +P         +P     +  C +++   +HC  K   QW       
Sbjct: 1615 EHI-------SPHQPMTSLQYLHAQPITCQGMFLCAVIRALHQHCACKMHPQWIGLITST 1667

Query: 386  FPVSGHDIRKVGISSGKEIGALLQQLREQWK 416
             P  G  +++V +S   ++   L  L +Q+K
Sbjct: 1668 LPYMGKVLQRVVVSVTLQLCRNLDNLIQQYK 1698


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,398,467
Number of Sequences: 37866
Number of extensions: 704226
Number of successful extensions: 1512
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1506
Number of HSP's gapped (non-prelim): 15
length of query: 434
length of database: 18,247,518
effective HSP length: 105
effective length of query: 329
effective length of database: 14,271,588
effective search space: 4695352452
effective search space used: 4695352452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.