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Search of human proteins with 154275771
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens] 472 e-133
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens] 329 2e-90
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens] 184 8e-47
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens] 58 8e-09
gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens] 58 8e-09
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens] 58 8e-09
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens] 50 2e-06
gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens] 37 0.020
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens] 34 0.13
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens] 34 0.13
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi... 28 5.5
gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens] 28 7.2
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 28 7.2
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 28 7.2
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 28 9.4
>gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]
Length = 242
Score = 472 bits (1214), Expect = e-133
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL 60
MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
Sbjct: 1 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL 60
Query: 61 INIKGISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYA 120
INIKGISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYA
Sbjct: 61 INIKGISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYA 120
Query: 121 LLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAA 180
LLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAA
Sbjct: 121 LLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAA 180
Query: 181 MFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 240
MFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA
Sbjct: 181 MFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 240
Query: 241 KD 242
KD
Sbjct: 241 KD 242
>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
Length = 339
Score = 329 bits (843), Expect = 2e-90
Identities = 166/173 (95%), Positives = 171/173 (98%)
Query: 70 KADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 129
+ +++L +AERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA
Sbjct: 167 RPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 226
Query: 130 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKP 189
LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKP
Sbjct: 227 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKP 286
Query: 190 IGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 242
IGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
Sbjct: 287 IGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 339
Score = 149 bits (377), Expect = 2e-36
Identities = 76/80 (95%), Positives = 77/80 (96%)
Query: 1 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL 60
MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
Sbjct: 1 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL 60
Query: 61 INIKGISEAKADKILVMAER 80
INIKGISEAKADKIL A +
Sbjct: 61 INIKGISEAKADKILAEAAK 80
>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
Length = 340
Score = 184 bits (466), Expect = 8e-47
Identities = 96/189 (50%), Positives = 130/189 (68%), Gaps = 2/189 (1%)
Query: 56 PKKELINIKGISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMV 115
P ++I I + + D++ +A+R+ + VLDNV YARA+ ++HQ +LL +A
Sbjct: 152 PGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFH 211
Query: 116 ESR--YALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 173
E + LLI+DS AL+R D+SGRGEL+ RQ LA+ L L ++++E+ VAV +TNQ+
Sbjct: 212 EEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 271
Query: 174 AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 233
A F ADPKKPIGG+I+AHASTTR+ LRKGRGE RI KIYDSP +PE EA FAI
Sbjct: 272 ADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAIT 331
Query: 234 ADGVGDAKD 242
A G+GDAK+
Sbjct: 332 AGGIGDAKE 340
Score = 53.1 bits (126), Expect = 2e-07
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 16 EEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKIL 75
EEES Q I L++ GIN D+KKL+ G T++ + ++ L N+KG+SEAK DKI
Sbjct: 16 EEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIK 74
Query: 76 VMAER 80
A +
Sbjct: 75 EAANK 79
>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
Length = 384
Score = 57.8 bits (138), Expect = 8e-09
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Query: 66 ISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVD 125
I+E++ + E+ L+ S V R D Q + ++ L+I+D
Sbjct: 155 IAESRFPRYFNTEEKLLLTSS----KVHLYRELTCDEVLQRIESLEEEIISKGIKLVILD 210
Query: 126 SATALYRTDYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFA 183
S ++ R ++ + G L R LAR L LA+EF + V++TNQ+ + GA
Sbjct: 211 SVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQ 270
Query: 184 ADPKKPIG------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPE 225
AD P GN +H+ TRL L+ E R I SP P
Sbjct: 271 ADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPF 330
Query: 226 AEAMFAINADGV 237
++ I +G+
Sbjct: 331 TSFVYTIKEEGL 342
>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
Length = 350
Score = 57.8 bits (138), Expect = 8e-09
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Query: 66 ISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVD 125
I+E++ + E+ L+ S V R D Q + ++ L+I+D
Sbjct: 155 IAESRFPRYFNTEEKLLLTSS----KVHLYRELTCDEVLQRIESLEEEIISKGIKLVILD 210
Query: 126 SATALYRTDYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFA 183
S ++ R ++ + G L R LAR L LA+EF + V++TNQ+ + GA
Sbjct: 211 SVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQ 270
Query: 184 ADPKKPIG------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPE 225
AD P GN +H+ TRL L+ E R I SP P
Sbjct: 271 ADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPF 330
Query: 226 AEAMFAINADGV 237
++ I +G+
Sbjct: 331 TSFVYTIKEEGL 342
>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
Length = 350
Score = 57.8 bits (138), Expect = 8e-09
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 24/192 (12%)
Query: 66 ISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVD 125
I+E++ + E+ L+ S V R D Q + ++ L+I+D
Sbjct: 155 IAESRFPRYFNTEEKLLLTSS----KVHLYRELTCDEVLQRIESLEEEIISKGIKLVILD 210
Query: 126 SATALYRTDYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFA 183
S ++ R ++ + G L R LAR L LA+EF + V++TNQ+ + GA
Sbjct: 211 SVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQ 270
Query: 184 ADPKKPIG------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPE 225
AD P GN +H+ TRL L+ E R I SP P
Sbjct: 271 ADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPF 330
Query: 226 AEAMFAINADGV 237
++ I +G+
Sbjct: 331 TSFVYTIKEEGL 342
>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
Length = 376
Score = 50.1 bits (118), Expect = 2e-06
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 13/156 (8%)
Query: 89 LDNV-AYARAFNTDHQTQLLYQA----SAMMVESRYALLIVDSATALYRTDYSGRGELSA 143
LDN+ ++ F T+LL Q + S+ L+IVD +R D +LS
Sbjct: 201 LDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD---DLSL 257
Query: 144 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL 203
R L + ++ LA+ +AV++TNQ+ ++D P G HA+T RL
Sbjct: 258 RTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLV----PALGESWGHAATIRL 313
Query: 204 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 239
R + R+ +Y SP E +F I G D
Sbjct: 314 IFHWDR-KQRLATLYKSPSQKECTVLFQIKPQGFRD 348
>gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]
Length = 216
Score = 36.6 bits (83), Expect = 0.020
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 63 IKGISEAKADKILVMAERYGLS-GSDVLDNVAYARAFNTDHQTQLLYQASAMMVES---- 117
IK + + + + +A++ GLS ++ L + AF+ +L + + +
Sbjct: 25 IKTVVDLVSADLEEVAQKCGLSYKAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGS 84
Query: 118 --RYALLIVDSATALYRTDYSGRG-ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 174
+++VDS TA+ G+ E A M LAR L+ L R + G+AVV+TN +
Sbjct: 85 SGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLAR---DLGMAVVVTNHITR 141
Query: 175 QVDGAAMFAADPKKPIGGNIIAHASTTRLYL 205
D + KP G + +TR+ L
Sbjct: 142 DRDSGRL------KPALGRSWSFVPSTRILL 166
>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
Length = 348
Score = 33.9 bits (76), Expect = 0.13
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 121 LLIVDSATALYRTDYSGRG-ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGA 179
+++VDS TA+ G+ E A M LAR L+ L R + G+AVV+TN + D
Sbjct: 222 VVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLAR---DLGMAVVVTNHITRDRDSG 278
Query: 180 AMFAADPKKPIGGNIIAHASTTRLYL 205
+ KP G + +TR+ L
Sbjct: 279 RL------KPALGRSWSFVPSTRILL 298
>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
Length = 328
Score = 33.9 bits (76), Expect = 0.13
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 121 LLIVDSATALYRTDYSGRG-ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGA 179
+++VDS TA+ G+ E A M LAR L+ L R + G+AVV+TN + D
Sbjct: 202 VVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLAR---DLGMAVVVTNHITRDRDSG 258
Query: 180 AMFAADPKKPIGGNIIAHASTTRLYL 205
+ KP G + +TR+ L
Sbjct: 259 RL------KPALGRSWSFVPSTRILL 278
>gi|4885657 X-ray repair cross complementing protein 2 [Homo
sapiens]
Length = 280
Score = 28.5 bits (62), Expect = 5.5
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 99 NTDHQTQLLYQASAMMVES-RYALLIVDSATALYRTDYSGRGE-LSARQMHLARFLRMLL 156
++ H LY +M LLI+DS +A Y D GE ++ ++ L + + L
Sbjct: 122 SSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQESTLRKCSQCLE 181
Query: 157 RLADEFGVAVVITNQVVAQ 175
+L +++ + + T Q + Q
Sbjct: 182 KLVNDYRLVLFATTQTIMQ 200
>gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 993
Score = 28.1 bits (61), Expect = 7.2
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 152 LRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 206
L ++ RLA+E+G VV T V ++ A M A + G + AH+S R LR
Sbjct: 420 LSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYL-GQLTAHSSVARHLLR 473
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 28.1 bits (61), Expect = 7.2
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 63 IKGISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALL 122
++G+S+ + + + YG V D +A +R F T + + ++++ +VE + LL
Sbjct: 170 LEGVSKDLQARYKAVLQEYGHEERRVQDELARSRKFFTGSLAE-VEKSNSQVVEEQSYLL 228
Query: 123 IVDSATALYRTDY 135
+ A+ R DY
Sbjct: 229 NIAEVQAVSRCDY 241
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 28.1 bits (61), Expect = 7.2
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 63 IKGISEAKADKILVMAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALL 122
++G+S+ + + + YG V D +A +R F T + + ++++ +VE + LL
Sbjct: 170 LEGVSKDLQARYKAVLQEYGHEERRVQDELARSRKFFTGSLAE-VEKSNSQVVEEQSYLL 228
Query: 123 IVDSATALYRTDY 135
+ A+ R DY
Sbjct: 229 NIAEVQAVSRCDY 241
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 27.7 bits (60), Expect = 9.4
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 37 DVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILV--MAERYGLSGSDVLDNVAY 94
D KK + T+E++ A KK L + + +S+ +K L E+ LD++
Sbjct: 1375 DTKKKVDDDLGTIESLEEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDL-- 1432
Query: 95 ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQ-----MHLA 149
+ DHQ Q+ + L S +A Y + R E AR+ + LA
Sbjct: 1433 --TVDLDHQRQVASNLEKKQKKFDQLLAEEKSISARY-AEERDRAEAEAREKETKALSLA 1489
Query: 150 RFLRMLLRLADEF 162
R L L +EF
Sbjct: 1490 RALEEALEAKEEF 1502
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,549,015
Number of Sequences: 37866
Number of extensions: 273897
Number of successful extensions: 589
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 18
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.