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Search of human proteins with 153791384
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153791384 ribosomal protein L22-like 1 [Homo sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153791384 ribosomal protein L22-like 1 [Homo sapiens] 251 1e-67
gi|4506613 ribosomal protein L22 proprotein [Homo sapiens] 175 7e-45
gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens] 30 0.45
gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens] 30 0.45
gi|212549536 regulator of G-protein signaling like 1 [Homo sapiens] 29 1.00
gi|32455252 phosphoinositide-3-kinase, regulatory subunit 1 (alp... 28 1.3
gi|32455250 phosphoinositide-3-kinase, regulatory subunit 1 (alp... 28 1.3
gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alp... 28 1.3
gi|26638657 mitochondrial ribosomal protein L20 [Homo sapiens] 28 1.3
gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta... 27 3.8
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 27 4.9
gi|93277070 RNA binding motif protein 45 [Homo sapiens] 27 4.9
gi|4504643 interleukin 12 receptor, beta 2 precursor [Homo sapiens] 26 6.5
gi|5174729 TSC22 domain family, member 1 isoform 2 [Homo sapiens] 26 6.5
gi|194272228 leucine rich repeat containing 48 isoform b [Homo s... 26 6.5
gi|194272226 leucine rich repeat containing 48 isoform b [Homo s... 26 6.5
gi|194272224 leucine rich repeat containing 48 isoform a [Homo s... 26 6.5
gi|194272222 leucine rich repeat containing 48 isoform a [Homo s... 26 6.5
gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens] 26 6.5
gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens] 26 6.5
>gi|153791384 ribosomal protein L22-like 1 [Homo sapiens]
Length = 122
Score = 251 bits (640), Expect = 1e-67
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MAPQKDRKPKRSTWRFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERF 60
MAPQKDRKPKRSTWRFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERF
Sbjct: 1 MAPQKDRKPKRSTWRFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERF 60
Query: 61 KNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDESES 120
KNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDESES
Sbjct: 61 KNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDESES 120
Query: 121 ED 122
ED
Sbjct: 121 ED 122
>gi|4506613 ribosomal protein L22 proprotein [Homo sapiens]
Length = 128
Score = 175 bits (444), Expect = 7e-45
Identities = 87/119 (73%), Positives = 98/119 (82%), Gaps = 1/119 (0%)
Query: 5 KDRKPKRSTWRFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGN-VVHIERFKNK 63
K K K+ +F LD THPVEDGI D+ NFEQFL+E++KVNGK GNLG VV IER K+K
Sbjct: 10 KGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSK 69
Query: 64 ITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDESESED 122
ITV SE FSKRYLKYLTKKYLKKNNLRDWLRVVA+ KE+YELRYFQI+QDE+E E ED
Sbjct: 70 ITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEEDED 128
>gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens]
Length = 2039
Score = 30.0 bits (66), Expect = 0.45
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 40 EKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS 99
+K+ GKT + H ER EK+ K+ ++ +KY K++ ++ R V
Sbjct: 618 KKMDKEGKTLKKHKLKHKER---------EKEKHKKEIEGEKEKYKTKDSAKELQRSVEF 668
Query: 100 DKETYELRYFQISQDED 116
D+E ++ +F+ + ED
Sbjct: 669 DREFWKENFFKSDETED 685
>gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens]
Length = 2062
Score = 30.0 bits (66), Expect = 0.45
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 40 EKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVAS 99
+K+ GKT + H ER EK+ K+ ++ +KY K++ ++ R V
Sbjct: 641 KKMDKEGKTLKKHKLKHKER---------EKEKHKKEIEGEKEKYKTKDSAKELQRSVEF 691
Query: 100 DKETYELRYFQISQDED 116
D+E ++ +F+ + ED
Sbjct: 692 DREFWKENFFKSDETED 708
>gi|212549536 regulator of G-protein signaling like 1 [Homo sapiens]
Length = 1076
Score = 28.9 bits (63), Expect = 1.00
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 63 KITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDESESED 122
++ V SE Q S R + YL+++ + W+R+++ + + R F ++ + E ED
Sbjct: 762 EVEVQSEVQISSRKPSKIVSTYLQESQKKGWMRMISFIRSFCKYRRFMLNPSK-RQEFED 820
>gi|32455252 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
isoform 2 [Homo sapiens]
Length = 454
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 63 KITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDED 116
K ++ ++ +YL +LT+K +++ L +WL E E +Y + DED
Sbjct: 297 KPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWL-----GNENTEDQYSLVEDDED 345
>gi|32455250 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
isoform 3 [Homo sapiens]
Length = 424
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 63 KITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDED 116
K ++ ++ +YL +LT+K +++ L +WL E E +Y + DED
Sbjct: 267 KPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWL-----GNENTEDQYSLVEDDED 315
>gi|32455248 phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
isoform 1 [Homo sapiens]
Length = 724
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 63 KITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDED 116
K ++ ++ +YL +LT+K +++ L +WL E E +Y + DED
Sbjct: 567 KPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWL-----GNENTEDQYSLVEDDED 615
>gi|26638657 mitochondrial ribosomal protein L20 [Homo sapiens]
Length = 149
Score = 28.5 bits (62), Expect = 1.3
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 56 HIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRD-WLRVVASDKETYELRY 108
H KN+ ++ + + ++K +YLKK N+R W+ + + + + L+Y
Sbjct: 30 HFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKY 83
>gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
[Homo sapiens]
Length = 728
Score = 26.9 bits (58), Expect = 3.8
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 70 KQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDE 117
++ +YL +LT+K ++ + +WL + ++ Y L +DED+
Sbjct: 571 RKIRDQYLVWLTQKGARQKKINEWLGIKNETEDQYAL-----MEDEDD 613
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 26.6 bits (57), Expect = 4.9
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 34 FEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQ 71
FEQ L+EK + GKTG L +++ + + TVV +++
Sbjct: 1510 FEQLLKEKEQ--GKTGELNQLLNAVKSMQEKTVVFQQE 1545
>gi|93277070 RNA binding motif protein 45 [Homo sapiens]
Length = 474
Score = 26.6 bits (57), Expect = 4.9
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 35 EQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWL 94
E+ LREK KV G++ + KNK+T S+ RYLK +N R +
Sbjct: 133 EEDLREKFKV------YGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFR 186
Query: 95 RVVASDK----ETYELRYFQISQDE 115
++A K E+ E Y+ + E
Sbjct: 187 AILAEPKNKASESSEQDYYSNMRQE 211
>gi|4504643 interleukin 12 receptor, beta 2 precursor [Homo sapiens]
Length = 862
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 38 LREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDW 93
L +++ L N+V++ + K + ++ K F++ + +K +L K + DW
Sbjct: 253 LLNRLRYRPSNSRLWNMVNVTKAKGRHDLLDLKPFTEYEFQISSKLHLYKGSWSDW 308
>gi|5174729 TSC22 domain family, member 1 isoform 2 [Homo sapiens]
Length = 144
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 93 WLRVVASDKETYELRYFQIS 112
W R VA D Y+LR+F IS
Sbjct: 5 WCRPVAMDLGVYQLRHFSIS 24
>gi|194272228 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 26.2 bits (56), Expect = 6.5
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 45 NGKTGNLGNVVHIERFKNKITV------VSEKQFSKRYL-KYLTK-KYLKKNNLRDWLRV 96
N + N+ N++++ RFK T+ +SE + K ++ YL YL + D +
Sbjct: 140 NNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKK 199
Query: 97 VASDKETYELRYFQISQDEDESESED 122
+A K Y + + ++ +++ ED
Sbjct: 200 LAEAKHQYSIDELKHQENLMQAQLED 225
>gi|194272226 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 26.2 bits (56), Expect = 6.5
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 45 NGKTGNLGNVVHIERFKNKITV------VSEKQFSKRYL-KYLTK-KYLKKNNLRDWLRV 96
N + N+ N++++ RFK T+ +SE + K ++ YL YL + D +
Sbjct: 140 NNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKK 199
Query: 97 VASDKETYELRYFQISQDEDESESED 122
+A K Y + + ++ +++ ED
Sbjct: 200 LAEAKHQYSIDELKHQENLMQAQLED 225
>gi|194272224 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 26.2 bits (56), Expect = 6.5
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 45 NGKTGNLGNVVHIERFKNKITV------VSEKQFSKRYL-KYLTK-KYLKKNNLRDWLRV 96
N + N+ N++++ RFK T+ +SE + K ++ YL YL + D +
Sbjct: 140 NNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKK 199
Query: 97 VASDKETYELRYFQISQDEDESESED 122
+A K Y + + ++ +++ ED
Sbjct: 200 LAEAKHQYSIDELKHQENLMQAQLED 225
>gi|194272222 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 26.2 bits (56), Expect = 6.5
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 45 NGKTGNLGNVVHIERFKNKITV------VSEKQFSKRYL-KYLTK-KYLKKNNLRDWLRV 96
N + N+ N++++ RFK T+ +SE + K ++ YL YL + D +
Sbjct: 140 NNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKK 199
Query: 97 VASDKETYELRYFQISQDEDESESED 122
+A K Y + + ++ +++ ED
Sbjct: 200 LAEAKHQYSIDELKHQENLMQAQLED 225
>gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens]
Length = 981
Score = 26.2 bits (56), Expect = 6.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 87 KNNLRDW----LRVVASDKETYELRYFQISQDEDESESE 121
K N DW L + + ETYE ++ ++E+E E E
Sbjct: 897 KENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEEEE 935
>gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens]
Length = 971
Score = 26.2 bits (56), Expect = 6.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 87 KNNLRDW----LRVVASDKETYELRYFQISQDEDESESE 121
K N DW L + + ETYE ++ ++E+E E E
Sbjct: 887 KENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEEEE 925
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,485,504
Number of Sequences: 37866
Number of extensions: 176610
Number of successful extensions: 375
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 20
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.