Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 15082238
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15082238 heat shock protein, alpha-crystallin-related, B9
[Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15082238 heat shock protein, alpha-crystallin-related, B9 [Ho... 323 5e-89
gi|4503055 crystallin, alpha A [Homo sapiens] 45 3e-05
gi|21389433 heat shock protein, alpha-crystallin-related, B6 [Ho... 43 1e-04
gi|4503057 crystallin, alpha B [Homo sapiens] 42 2e-04
gi|4504517 heat shock protein beta-1 [Homo sapiens] 40 6e-04
gi|7657146 heat shock 22kDa protein 8 [Homo sapiens] 37 0.009
gi|7657202 cardiovascular heat shock protein [Homo sapiens] 37 0.009
gi|5453688 heat shock 27kDa protein 3 [Homo sapiens] 31 0.51
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 28 2.5
gi|169204521 PREDICTED: hypothetical protein [Homo sapiens] 28 3.3
gi|169205149 PREDICTED: hypothetical protein [Homo sapiens] 28 3.3
gi|169204400 PREDICTED: hypothetical protein [Homo sapiens] 28 3.3
gi|169217085 PREDICTED: hypothetical protein [Homo sapiens] 27 5.6
gi|239752331 PREDICTED: hypothetical protein XP_002348206 [Homo ... 27 5.6
gi|239746844 PREDICTED: hypothetical protein XP_002343865 [Homo ... 27 5.6
gi|4759328 class I cytokine receptor [Homo sapiens] 27 7.4
gi|148596996 CUE domain containing 2 [Homo sapiens] 27 7.4
gi|117938328 l(3)mbt-like isoform I [Homo sapiens] 27 9.6
gi|117938330 l(3)mbt-like isoform II [Homo sapiens] 27 9.6
gi|38570099 glutamine-rich 1 [Homo sapiens] 27 9.6
gi|38570097 glutamine-rich 1 [Homo sapiens] 27 9.6
>gi|15082238 heat shock protein, alpha-crystallin-related, B9 [Homo
sapiens]
Length = 159
Score = 323 bits (827), Expect = 5e-89
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MQRVGNTFSNESRVASRCPSVGLAERNRVATMPVRLLRDSPAAQEDNDHARDGFQMKLDA 60
MQRVGNTFSNESRVASRCPSVGLAERNRVATMPVRLLRDSPAAQEDNDHARDGFQMKLDA
Sbjct: 1 MQRVGNTFSNESRVASRCPSVGLAERNRVATMPVRLLRDSPAAQEDNDHARDGFQMKLDA 60
Query: 61 HGFAPEELVVQVDGQWLMVTGQQQLDVRDPERVSYRMSQKVHRKMLPSNLSPTAMTCCLT 120
HGFAPEELVVQVDGQWLMVTGQQQLDVRDPERVSYRMSQKVHRKMLPSNLSPTAMTCCLT
Sbjct: 61 HGFAPEELVVQVDGQWLMVTGQQQLDVRDPERVSYRMSQKVHRKMLPSNLSPTAMTCCLT 120
Query: 121 PSGQLWVRGQCVALALPEAQTGPSPRLGSLGSKASNLTR 159
PSGQLWVRGQCVALALPEAQTGPSPRLGSLGSKASNLTR
Sbjct: 121 PSGQLWVRGQCVALALPEAQTGPSPRLGSLGSKASNLTR 159
>gi|4503055 crystallin, alpha A [Homo sapiens]
Length = 173
Score = 44.7 bits (104), Expect = 3e-05
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 35 RLLRDSPAAQEDNDHARDGFQMKLDAHGFAPEELVVQVDGQWLMVTGQQQLDVRDPERVS 94
R + DS ++ +D RD F + LD F+PE+L V+V ++ + G+ D +
Sbjct: 54 RTVLDSGISEVRSD--RDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYI- 110
Query: 95 YRMSQKVHRK-MLPSNLSPTAMTCCLTPSGQLWVRGQCVALALPEAQTG 142
S++ HR+ LPSN+ +A++C L+ G L G P+ QTG
Sbjct: 111 ---SREFHRRYRLPSNVDQSALSCSLSADGMLTFCG-------PKIQTG 149
>gi|21389433 heat shock protein, alpha-crystallin-related, B6 [Homo
sapiens]
Length = 160
Score = 42.7 bits (99), Expect = 1e-04
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 11 ESRVASRCPSVGLAERNRVATMPVRLLRDSPAAQEDNDHARDGFQMKLDAHGFAPEELVV 70
E+ +A+ CP+ R ++ + P AQ D F + LD F+PEE+ V
Sbjct: 39 EAELAALCPTTLAPYYLRAPSVAL------PVAQVPTDPGH--FSVLLDVKHFSPEEIAV 90
Query: 71 QVDGQWLMVTGQQQLDVRDPERVSYRMSQKVHRKMLPSNLSPTAMTCCLTPSGQLWVRGQ 130
+V G+ + V + + P+ + + R LP + P A+T L+P G L ++
Sbjct: 91 KVVGEHVEVHARHE---ERPDEHGFVAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQ-- 145
Query: 131 CVALALPEAQTGPSP 145
A P + P P
Sbjct: 146 ----AAPASAQAPPP 156
>gi|4503057 crystallin, alpha B [Homo sapiens]
Length = 175
Score = 42.0 bits (97), Expect = 2e-04
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 51 RDGFQMKLDAHGFAPEELVVQVDGQWLMVTGQQQLDVRDPERVSYRMSQKVHRK-MLPSN 109
+D F + LD F+PEEL V+V G + V G+ + + + +S++ HRK +P++
Sbjct: 72 KDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHE----ERQDEHGFISREFHRKYRIPAD 127
Query: 110 LSPTAMTCCLTPSGQLWVRGQCVALALPE 138
+ P +T L+ G L V G ++ PE
Sbjct: 128 VDPLTITSSLSSDGVLTVNGPRKQVSGPE 156
>gi|4504517 heat shock protein beta-1 [Homo sapiens]
Length = 205
Score = 40.4 bits (93), Expect = 6e-04
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 49 HARDGFQMKLDAHGFAPEELVVQVDGQWLMVTGQQQLDVRDPERVSYRMSQKVHRKMLPS 108
H D +++ LD + FAP+EL V+ + +TG+ + + +S ++K LP
Sbjct: 90 HTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHEERQDEHGYISRCFTRKY---TLPP 146
Query: 109 NLSPTAMTCCLTPSGQLWVRGQCVALA 135
+ PT ++ L+P G L V LA
Sbjct: 147 GVDPTQVSSSLSPEGTLTVEAPMPKLA 173
>gi|7657146 heat shock 22kDa protein 8 [Homo sapiens]
Length = 196
Score = 36.6 bits (83), Expect = 0.009
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 58 LDAHGFAPEELVVQVDGQWLMVTGQQQLDVRDPERVSYRMSQKVHRKMLPSNLSPTAMTC 117
++ H F PEEL+V+ ++ V+G+ + ++ VS ++K+ LP+ + P +
Sbjct: 100 VNVHSFKPEELMVKTKDGYVEVSGKHEEKQQEGGIVSKNFTKKI---QLPAEVDPVTVFA 156
Query: 118 CLTPSGQL 125
L+P G L
Sbjct: 157 SLSPEGLL 164
>gi|7657202 cardiovascular heat shock protein [Homo sapiens]
Length = 170
Score = 36.6 bits (83), Expect = 0.009
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 52 DGFQMKLDAHGFAPEELVVQVDGQWLMVTGQQQLDVRDPERVSYR--MSQKVHRKMLPSN 109
D ++ +D F+PE+++V T ++VR + + M+ H+ LP +
Sbjct: 80 DAYEFAVDVRDFSPEDIIV--------TTSNNHIEVRAEKLAADGTVMNTFAHKCQLPED 131
Query: 110 LSPTAMTCCLTPSGQLWVRGQ 130
+ PT++T L G L +R +
Sbjct: 132 VDPTSVTSALREDGSLTIRAR 152
>gi|5453688 heat shock 27kDa protein 3 [Homo sapiens]
Length = 150
Score = 30.8 bits (68), Expect = 0.51
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 42 AAQEDNDHARDGFQMKLDAHGFAPEELVVQVDGQWLMVTGQ 82
AA+ + FQ+ LD F PE++++Q WL++ Q
Sbjct: 59 AAETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQ 99
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 28.5 bits (62), Expect = 2.5
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 20/77 (25%)
Query: 82 QQQLDVRDPERVSYRMSQKVHRKMLPSNLSP--TAMTCCLTPSGQLWVRGQCVALALPEA 139
QQQL R P++ H++ P + P TA T P G W + LP
Sbjct: 283 QQQLQARPPQQ---------HQQQQPQGIRPQFTAPTQVPVPPG--WNQ-------LPSG 324
Query: 140 QTGPSPRLGSLGSKASN 156
P P GSLG+ +N
Sbjct: 325 ALQPPPAQGSLGTMTAN 341
>gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 28.1 bits (61), Expect = 3.3
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 107 PSNLSPTAMTCCLTPSGQLWVRGQCVALALPEAQTGPSPRLGSLGS 152
PS PTA+ + S W+R C +LALP P P L GS
Sbjct: 8 PSLDIPTALVSSSSISSCCWLRSSCGSLALPP----PLPLLAGGGS 49
>gi|169205149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 28.1 bits (61), Expect = 3.3
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 107 PSNLSPTAMTCCLTPSGQLWVRGQCVALALPEAQTGPSPRLGSLGS 152
PS PTA+ + S W+R C +LALP P P L GS
Sbjct: 8 PSLDIPTALVSSSSISSCCWLRSSCGSLALPP----PLPLLAGGGS 49
>gi|169204400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 28.1 bits (61), Expect = 3.3
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 107 PSNLSPTAMTCCLTPSGQLWVRGQCVALALPEAQTGPSPRLGSLGS 152
PS PTA+ + S W+R C +LALP P P L GS
Sbjct: 8 PSLDIPTALVSSSSISSCCWLRSSCGSLALPP----PLPLLAGGGS 49
>gi|169217085 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 27.3 bits (59), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 44 QEDNDHARDGFQMKLDAHGFAPEELVVQVDGQ 75
QED +H ++ + + + HG +V QV G+
Sbjct: 31 QEDYNHGKNDYSLHIQGHGAMQNTVVFQVGGR 62
>gi|239752331 PREDICTED: hypothetical protein XP_002348206 [Homo
sapiens]
Length = 130
Score = 27.3 bits (59), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 44 QEDNDHARDGFQMKLDAHGFAPEELVVQVDGQ 75
QED +H ++ + + + HG +V QV G+
Sbjct: 31 QEDYNHGKNDYSLHIQGHGAMQNTVVFQVGGR 62
>gi|239746844 PREDICTED: hypothetical protein XP_002343865 [Homo
sapiens]
Length = 130
Score = 27.3 bits (59), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 44 QEDNDHARDGFQMKLDAHGFAPEELVVQVDGQ 75
QED +H ++ + + + HG +V QV G+
Sbjct: 31 QEDYNHGKNDYSLHIQGHGAMQNTVVFQVGGR 62
>gi|4759328 class I cytokine receptor [Homo sapiens]
Length = 636
Score = 26.9 bits (58), Expect = 7.4
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 110 LSPTAMTCC--LTPSGQLWVRGQCV 132
LSP +TCC L PSG W R V
Sbjct: 277 LSPEGITCCCSLIPSGAEWARVSAV 301
>gi|148596996 CUE domain containing 2 [Homo sapiens]
Length = 287
Score = 26.9 bits (58), Expect = 7.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 64 APEELVVQVDGQWLMVTGQQQLDVRDPE 91
AP++L+ +D Q + G++ DVR+PE
Sbjct: 240 APKKLIRYIDNQVVSTKGERFKDVRNPE 267
>gi|117938328 l(3)mbt-like isoform I [Homo sapiens]
Length = 772
Score = 26.6 bits (57), Expect = 9.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 25 ERNRVATMPVRLLRDSPAAQEDNDHARDGFQMKLDAHGFAPE 66
E + T PV L +DS A H ++GF++ + G P+
Sbjct: 213 EEQKAITAPVSLFQDSQAV----THNKNGFKLGMKLEGIDPQ 250
>gi|117938330 l(3)mbt-like isoform II [Homo sapiens]
Length = 738
Score = 26.6 bits (57), Expect = 9.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 25 ERNRVATMPVRLLRDSPAAQEDNDHARDGFQMKLDAHGFAPE 66
E + T PV L +DS A H ++GF++ + G P+
Sbjct: 213 EEQKAITAPVSLFQDSQAV----THNKNGFKLGMKLEGIDPQ 250
>gi|38570099 glutamine-rich 1 [Homo sapiens]
Length = 776
Score = 26.6 bits (57), Expect = 9.6
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 82 QQQLDVRDPERVSYRMSQKVHRKMLPSNLSPTAMTCCLTPSG---QLWVRGQCVALALPE 138
+QQ+ V+ P++V ++ + + + + LSP T Q+ ++GQ A P
Sbjct: 91 EQQIQVQQPQQVQVQVQVQQSPQQVSAQLSPQLTVHQPTEQPIQVQVQIQGQAPQSAAPS 150
Query: 139 AQT----GPSP 145
QT PSP
Sbjct: 151 IQTPSLQSPSP 161
>gi|38570097 glutamine-rich 1 [Homo sapiens]
Length = 776
Score = 26.6 bits (57), Expect = 9.6
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 82 QQQLDVRDPERVSYRMSQKVHRKMLPSNLSPTAMTCCLTPSG---QLWVRGQCVALALPE 138
+QQ+ V+ P++V ++ + + + + LSP T Q+ ++GQ A P
Sbjct: 91 EQQIQVQQPQQVQVQVQVQQSPQQVSAQLSPQLTVHQPTEQPIQVQVQIQGQAPQSAAPS 150
Query: 139 AQT----GPSP 145
QT PSP
Sbjct: 151 IQTPSLQSPSP 161
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,469,617
Number of Sequences: 37866
Number of extensions: 282916
Number of successful extensions: 714
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 23
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.