Guide to the Human Genome
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Name: LOC100289879 Sequence: fasta or formatted (130aa) NCBI GI: 239752331
Description:

PREDICTED: hypothetical protein XP_002348206

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         10           1
 C cysteine            1.5          2           1
 D aspartate           4.6          6           1
 E glutamate           6.2          8           1
 F phenylalanine       3.8          5           1
 G glycine            13.1         17           3
 H histidine           4.6          6           1
 I isoleucine          2.3          3           1
 K lysine              4.6          6           1
 L leucine             6.2          8           1
 M methionine          2.3          3           1
 N asparagine          2.3          3           1
 P proline             2.3          3           2
 Q glutamine           7.7         10           1
 R arginine            9.2         12           2
 S serine              7.7         10           1
 T threonine           3.8          5           1
 V valine              5.4          7           2
 W tryptophan          2.3          3           1
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348206 
LOC100134381          1.000   PREDICTED: hypothetical protein 
LOC100286935          1.000   PREDICTED: hypothetical protein XP_002343865 
LOC147646             0.016   PREDICTED: hypothetical protein 
LOC147646             0.016   PREDICTED: hypothetical protein 
LOC147646             0.016   PREDICTED: hypothetical protein 
MLL4                  0.016   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100131831          0.016   PREDICTED: hypothetical protein 
LOC100131831          0.016   PREDICTED: hypothetical protein 
LOC100131831          0.016   PREDICTED: hypothetical protein 
HFE2                  0.016   hemojuvelin isoform a precursor 
AVEN                  0.012   cell death regulator aven 
NAT6                  0.012   N-acetyltransferase 6 
SEC16B                0.008   leucine zipper transcription regulator 2 
LOC100292214          0.008   PREDICTED: hypothetical protein 
HSPB9                 0.008   heat shock protein, alpha-crystallin-related, B9 [Ho...
ADIPOR2               0.008   adiponectin receptor 2 
TSEN15                0.008   tRNA splicing endonuclease 15 isoform 1 
TSEN15                0.008   tRNA splicing endonuclease 15 isoform 2 
NCL                   0.004   nucleolin 
SKAP1                 0.004   src kinase associated phosphoprotein 1 isoform 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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