Guide to the Human Genome
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Name: CLCA2 Sequence: fasta or formatted (943aa) NCBI GI: 5729769
Description:

chloride channel accessory 2 precursor

Referenced in:

Chloride Channels
Lung

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         64           2
 C cysteine            1.5         14           1
 D aspartate           4.6         43           2
 E glutamate           4.7         44           3
 F phenylalanine       4.8         45           2
 G glycine             6.8         64           2
 H histidine           3.0         28           2
 I isoleucine          7.0         66           2
 K lysine              4.9         46           2
 L leucine             8.1         76           2
 M methionine          1.8         17           1
 N asparagine          6.9         65           3
 P proline             5.6         53           4
 Q glutamine           4.2         40           2
 R arginine            3.7         35           2
 S serine              8.6         81           2
 T threonine           6.6         62           2
 V valine              6.7         63           2
 W tryptophan          1.1         10           1
 Y tyrosine            2.9         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chloride channel accessory 2 precursor 
CLCA1                 0.389   chloride channel accessory 1 precursor 
CLCA4                 0.381   chloride channel accessory 4 
TNC                   0.005   tenascin C precursor 
MUC6                  0.004   mucin 6, gastric 
ANO2                  0.004   anoctamin 2 
GJA4                  0.004   connexin 37 
CDH16                 0.003   cadherin 16 precursor 
RNF34                 0.003   ring finger protein 34 isoform 1 
RNF34                 0.003   ring finger protein 34 isoform 2 
TPCN1                 0.003   two pore segment channel 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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