Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 148540038
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148540038 hypothetical protein LOC130355 [Homo sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148540038 hypothetical protein LOC130355 [Homo sapiens] 256 2e-69
gi|27894330 interleukin 1, alpha proprotein [Homo sapiens] 30 0.49
gi|83367069 cyclin-dependent kinase-like 5 [Homo sapiens] 29 0.83
gi|4507281 cyclin-dependent kinase-like 5 [Homo sapiens] 29 0.83
gi|58331189 T-cell lymphoma invasion and metastasis 2 isoform b ... 28 2.4
gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a ... 28 2.4
gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 27 3.2
gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 27 3.2
gi|212549532 caspase 8 associated protein 2 [Homo sapiens] 27 3.2
gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens] 27 4.1
gi|157311649 neogenin homolog 1 [Homo sapiens] 27 4.1
gi|190610025 zinc finger protein 93 homolog [Homo sapiens] 27 4.1
gi|148806872 lupus brain antigen 1 [Homo sapiens] 27 4.1
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 27 5.4
gi|148491091 solute carrier family 25 member 24 isoform 1 [Homo ... 26 7.0
gi|47458041 solute carrier family 25 member 24 isoform 2 [Homo s... 26 7.0
gi|48476342 solute carrier family 25, member 23 [Homo sapiens] 26 7.0
gi|21361478 septin 6 isoform B [Homo sapiens] 26 9.2
gi|22035581 septin 6 isoform D [Homo sapiens] 26 9.2
gi|22035579 septin 6 isoform A [Homo sapiens] 26 9.2
gi|75677351 suppressor of defective silencing 3 [Homo sapiens] 26 9.2
gi|22035577 septin 6 isoform A [Homo sapiens] 26 9.2
>gi|148540038 hypothetical protein LOC130355 [Homo sapiens]
Length = 126
Score = 256 bits (655), Expect = 2e-69
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MAPGEVTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYK 60
MAPGEVTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYK
Sbjct: 1 MAPGEVTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYK 60
Query: 61 YDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKA 120
YDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKA
Sbjct: 61 YDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKA 120
Query: 121 NPISSW 126
NPISSW
Sbjct: 121 NPISSW 126
>gi|27894330 interleukin 1, alpha proprotein [Homo sapiens]
Length = 271
Score = 30.0 bits (66), Expect = 0.49
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 56 FRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCE-ED 114
+++ K DA KI SKT V + ++D+ +LLKE + SET + FF E
Sbjct: 171 YKSSKDDA-KITVILRISKTQLYVTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHG 229
Query: 115 YKNY 118
KNY
Sbjct: 230 TKNY 233
>gi|83367069 cyclin-dependent kinase-like 5 [Homo sapiens]
Length = 1030
Score = 29.3 bits (64), Expect = 0.83
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
Query: 10 VRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYKYDALKIIHQ 69
V L +F R +V+ V ++ + E + + +P P ++Y Y +K IH
Sbjct: 73 VELKEAFRRRGKLYLVFEYV--EKNMLELLEEMPNGVP-----PEKVKSYIYQLIKAIHW 125
Query: 70 AHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKA 120
HK N++V E LL+ + LK ++ +Y Y A
Sbjct: 126 CHK---NDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGNNANYTEYVA 173
>gi|4507281 cyclin-dependent kinase-like 5 [Homo sapiens]
Length = 1030
Score = 29.3 bits (64), Expect = 0.83
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
Query: 10 VRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYKYDALKIIHQ 69
V L +F R +V+ V ++ + E + + +P P ++Y Y +K IH
Sbjct: 73 VELKEAFRRRGKLYLVFEYV--EKNMLELLEEMPNGVP-----PEKVKSYIYQLIKAIHW 125
Query: 70 AHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKA 120
HK N++V E LL+ + LK ++ +Y Y A
Sbjct: 126 CHK---NDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGNNANYTEYVA 173
>gi|58331189 T-cell lymphoma invasion and metastasis 2 isoform b
[Homo sapiens]
Length = 626
Score = 27.7 bits (60), Expect = 2.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 7 TITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNL 52
T V++IRS NF+ + + L++T K+ +V LK +P+ L
Sbjct: 369 TNIVKVIRSILRENFRRHIKCELPLEKTCKDRLVPLKNRVPVSAKL 414
>gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a [Homo
sapiens]
Length = 1701
Score = 27.7 bits (60), Expect = 2.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 7 TITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNL 52
T V++IRS NF+ + + L++T K+ +V LK +P+ L
Sbjct: 1444 TNIVKVIRSILRENFRRHIKCELPLEKTCKDRLVPLKNRVPVSAKL 1489
>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 27.3 bits (59), Expect = 3.2
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 42 LKQDIPLRTNLPPPFRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGI 101
L +D+ + +P P ++ + + + S E++ + ++ LL +ED
Sbjct: 1436 LLEDLAVSLTVPSPLKSDGHLSFLKPDMSSSSTPEEVISAHFSEDALLEEED-------- 1487
Query: 102 ASETEIAFFCEEDYKNYKANPISSW 126
ASE +I E D + K++ SSW
Sbjct: 1488 ASEQDIHLALESDNSSSKSSCSSSW 1512
>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 27.3 bits (59), Expect = 3.2
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 42 LKQDIPLRTNLPPPFRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGI 101
L +D+ + +P P ++ + + + S E++ + ++ LL +ED
Sbjct: 1436 LLEDLAVSLTVPSPLKSDGHLSFLKPDMSSSSTPEEVISAHFSEDALLEEED-------- 1487
Query: 102 ASETEIAFFCEEDYKNYKANPISSW 126
ASE +I E D + K++ SSW
Sbjct: 1488 ASEQDIHLALESDNSSSKSSCSSSW 1512
>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 27.3 bits (59), Expect = 3.2
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 42 LKQDIPLRTNLPPPFRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGI 101
L +D+ + +P P ++ + + + S E++ + ++ LL +ED
Sbjct: 1436 LLEDLAVSLTVPSPLKSDGHLSFLKPDMSSSSTPEEVISAHFSEDALLEEED-------- 1487
Query: 102 ASETEIAFFCEEDYKNYKANPISSW 126
ASE +I E D + K++ SSW
Sbjct: 1488 ASEQDIHLALESDNSSSKSSCSSSW 1512
>gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens]
Length = 501
Score = 26.9 bits (58), Expect = 4.1
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 61 YDALKIIHQAHKSKTNELV--LSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNY 118
Y+ LK I + H+ NE+ +S+E +E L +E+ + +A + T+ EE Y Y
Sbjct: 85 YNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTD-----EEGYGRY 139
>gi|157311649 neogenin homolog 1 [Homo sapiens]
Length = 1461
Score = 26.9 bits (58), Expect = 4.1
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 27/99 (27%)
Query: 32 DQTVKEFIVFLKQDIPL-------------RTNLPPPFRNYKYDALKIIHQAHKSKTNEL 78
D V +VFLKQ PL + LP P K NE
Sbjct: 242 DPEVISDLVFLKQPSPLVRVIGQDVVLPCVASGLPTP--------------TIKWMKNEE 287
Query: 79 VLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKN 117
L E ERL+L +L+ + + + +FC D N
Sbjct: 288 ALDTESSERLVLLAGGSLEISDVTEDDAGTYFCIADNGN 326
>gi|190610025 zinc finger protein 93 homolog [Homo sapiens]
Length = 738
Score = 26.9 bits (58), Expect = 4.1
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 66 IIHQAHKSKTNELVLSLEDDERLLLKEDSTL--KAAGIASETEIAFFCEEDYKNYKANPI 123
++ H+S +++ LE +E+L +KE T K +G ++ E+A + + + +
Sbjct: 44 LVSVGHQSFKPDMISQLEREEKLWMKELQTQRGKHSGDRNQNEMATLHKAGLRCFSLGEL 103
Query: 124 SSW 126
S W
Sbjct: 104 SCW 106
>gi|148806872 lupus brain antigen 1 [Homo sapiens]
Length = 2375
Score = 26.9 bits (58), Expect = 4.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 59 YKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKN 117
Y+ A +A N L+LS+ D L+K ++ LK GI E+DY+N
Sbjct: 2302 YRRKAWAGAEEAMTRLVNILILSVRDARDWLMKTETRLKKEGIVQ--------EDDYEN 2352
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 26.6 bits (57), Expect = 5.4
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 68 HQAHKSKTNELVLSLE---DDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYK 119
+Q+ S L L+LE +D+ L+KE +LK++ IA TE +E K Y+
Sbjct: 1562 NQSLSSSCESLKLALEGLTEDKEKLVKEIESLKSSKIAESTEWQEKHKELQKEYE 1616
>gi|148491091 solute carrier family 25 member 24 isoform 1 [Homo
sapiens]
Length = 477
Score = 26.2 bits (56), Expect = 7.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 62 DALKIIHQAHKSKTNEL-------VLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEED 114
D LKI+ Q H SK++++ + E R L + + T IA ET + F+ E
Sbjct: 216 DRLKIMMQVHGSKSDKMNIFGGFRQMVKEGGIRSLWRGNGT-NVIKIAPETAVKFWAYEQ 274
Query: 115 YK 116
YK
Sbjct: 275 YK 276
>gi|47458041 solute carrier family 25 member 24 isoform 2 [Homo
sapiens]
Length = 458
Score = 26.2 bits (56), Expect = 7.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 62 DALKIIHQAHKSKTNEL-------VLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEED 114
D LKI+ Q H SK++++ + E R L + + T IA ET + F+ E
Sbjct: 197 DRLKIMMQVHGSKSDKMNIFGGFRQMVKEGGIRSLWRGNGT-NVIKIAPETAVKFWAYEQ 255
Query: 115 YK 116
YK
Sbjct: 256 YK 257
>gi|48476342 solute carrier family 25, member 23 [Homo sapiens]
Length = 468
Score = 26.2 bits (56), Expect = 7.0
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 62 DALKIIHQAHKSKTNEL-------VLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEED 114
D LK+ Q H SKTN L + LE R L + + + IA E+ I F E
Sbjct: 207 DRLKVFMQVHASKTNRLNILGGLRSMVLEGGIRSLWRGNG-INVLKIAPESAIKFMAYEQ 265
Query: 115 YK 116
K
Sbjct: 266 IK 267
>gi|21361478 septin 6 isoform B [Homo sapiens]
Length = 434
Score = 25.8 bits (55), Expect = 9.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 60 KYDALKIIHQAHKSKTNELVLSLEDD 85
K+D LK +HQ K K + SL+D+
Sbjct: 367 KFDRLKKLHQDEKKKLEDKKKSLDDE 392
>gi|22035581 septin 6 isoform D [Homo sapiens]
Length = 429
Score = 25.8 bits (55), Expect = 9.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 60 KYDALKIIHQAHKSKTNELVLSLEDD 85
K+D LK +HQ K K + SL+D+
Sbjct: 367 KFDRLKKLHQDEKKKLEDKKKSLDDE 392
>gi|22035579 septin 6 isoform A [Homo sapiens]
Length = 427
Score = 25.8 bits (55), Expect = 9.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 60 KYDALKIIHQAHKSKTNELVLSLEDD 85
K+D LK +HQ K K + SL+D+
Sbjct: 367 KFDRLKKLHQDEKKKLEDKKKSLDDE 392
>gi|75677351 suppressor of defective silencing 3 [Homo sapiens]
Length = 328
Score = 25.8 bits (55), Expect = 9.2
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 76 NELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYK 119
+E + S EDDER +S ASET++A EEDY K
Sbjct: 27 DEELESAEDDERSCRGRESDEDTED-ASETDLAKHDEEDYVEMK 69
>gi|22035577 septin 6 isoform A [Homo sapiens]
Length = 427
Score = 25.8 bits (55), Expect = 9.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 60 KYDALKIIHQAHKSKTNELVLSLEDD 85
K+D LK +HQ K K + SL+D+
Sbjct: 367 KFDRLKKLHQDEKKKLEDKKKSLDDE 392
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,804,456
Number of Sequences: 37866
Number of extensions: 180276
Number of successful extensions: 493
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 22
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.