Guide to the Human Genome
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Name: C2orf76 Sequence: fasta or formatted (126aa) NCBI GI: 148540038
Description:

hypothetical protein LOC130355

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          8           2
 C cysteine            0.8          1           1
 D aspartate           5.6          7           2
 E glutamate           8.7         11           2
 F phenylalanine       5.6          7           2
 G glycine             2.4          3           1
 H histidine           3.2          4           1
 I isoleucine          7.1          9           2
 K lysine              8.7         11           1
 L leucine            10.3         13           3
 M methionine          0.8          1           1
 N asparagine          5.6          7           1
 P proline             5.6          7           3
 Q glutamine           2.4          3           1
 R arginine            4.8          6           1
 S serine              5.6          7           2
 T threonine           5.6          7           1
 V valine              6.3          8           2
 W tryptophan          0.8          1           1
 Y tyrosine            4.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC130355 
IL1A                  0.022   interleukin 1, alpha proprotein 
CDKL5                 0.017   cyclin-dependent kinase-like 5 
CDKL5                 0.017   cyclin-dependent kinase-like 5 
TIAM2                 0.013   T-cell lymphoma invasion and metastasis 2 isoform b ...
TIAM2                 0.013   T-cell lymphoma invasion and metastasis 2 isoform a ...
CASP8AP2              0.009   caspase 8 associated protein 2 
CASP8AP2              0.009   caspase 8 associated protein 2 
CASP8AP2              0.009   caspase 8 associated protein 2 
SF3A3                 0.009   splicing factor 3a, subunit 3 
NEO1                  0.009   neogenin homolog 1 
ZNF235                0.009   zinc finger protein 93 homolog 
LBA1                  0.009   lupus brain antigen 1 
GOLGB1                0.009   golgi autoantigen, golgin subfamily b, macrogolgin ...
SLC25A24              0.004   solute carrier family 25 member 24 isoform 1 
SLC25A24              0.004   solute carrier family 25 member 24 isoform 2 
SLC25A23              0.004   solute carrier family 25, member 23 
SEPT6                 0.004   septin 6 isoform B 
SEPT6                 0.004   septin 6 isoform D 
SEPT6                 0.004   septin 6 isoform A 
SUDS3                 0.004   suppressor of defective silencing 3 
SEPT6                 0.004   septin 6 isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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